CmoCh01G009600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G009600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	Cmo_Chr01: 5990373 .. 5990756 (-)
RNA-Seq Expression	CmoCh01G009600
Synteny	CmoCh01G009600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

ATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Homology

[Close]

BLAST of CmoCh01G009600 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 8.3e-45
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 30  SCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVV 89
           +CT + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVV
Sbjct: 33  TCTRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVV 92

Query: 90  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 125
           LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 93  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 127

[Close]

BLAST of CmoCh01G009600 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-38
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 39  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 98
           +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 99  LPGVRYHIVRGTLDAVGVKDRQQGRS 125
           LPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRS 116

[Close]

BLAST of CmoCh01G009600 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRSSAL 128
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmoCh01G009600 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRSSAL 128
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmoCh01G009600 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRSSAL 128
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmoCh01G009600 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.1e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 17  MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 76

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 77  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of CmoCh01G009600 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.8e-58
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVNFSTITPKKPNSALRK 82

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 83  VARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 142

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 143 QGRSSAL 146

[Close]

BLAST of CmoCh01G009600 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 95  VEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVNFSTITPKKPNSALRK 154

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHNLQEH VVLVRGG VKDLPGVRYHIVRGTL A+GVKDRQ
Sbjct: 155 VARVRLTSGFEITAYIPGIGHNLQEHFVVLVRGG-VKDLPGVRYHIVRGTLYAIGVKDRQ 214

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 215 QGRSSAL 220

[Close]

BLAST of CmoCh01G009600 vs. ExPASy TrEMBL
Match: A0A0C5G6K8 (Ribosomal protein S12 OS=Ipomoea batatas OX=4120 GN=rps12 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 15  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 74
           M SKELNEEPYEVKISCTVL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 1   MNSKELNEEPYEVKISCTVLKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 75  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 128
           YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 61  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 113

[Close]

BLAST of CmoCh01G009600 vs. ExPASy TrEMBL
Match: A0A220NCX4 (Ribosomal protein S12 OS=Cressa cretica OX=1465651 GN=rps12 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.8e-54
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 15  MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 74
           M SKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA
Sbjct: 32  MNSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 91

Query: 75  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 128
           YIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 92  YIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 144

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 6.5e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 17  MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 76

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 77  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-59
Identity = 122/127 (96.06%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           MEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPK  NSALRK
Sbjct: 17  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKNQNSALRK 76

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEI AYIPGIGHNLQEHS VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 77  VARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           MEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLS+NFSTITPKKPNSALRK
Sbjct: 17  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSINFSTITPKKPNSALRK 76

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHNLQE+ VVLVRG RVKDLP VRYHIVRGTLDAVGVKDRQ
Sbjct: 77  VARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLPNVRYHIVRGTLDAVGVKDRQ 136

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 137 QGRSSAL 143

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVNFSTITPKKPNSALRK 82

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ
Sbjct: 83  VARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 142

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 143 QGRSSAL 146

[Close]

BLAST of CmoCh01G009600 vs. NCBI nr
Match: KAF1876942.1 (hypothetical protein Lal_00033867 [Lupinus albus])

HSP 1 Score: 225.3 bits (573), Expect = 2.9e-55
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 95  VEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVNFSTITPKKPNSALRK 154

Query: 61  VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQ 120
           VARVRLTSGFEITAYIPGIGHNLQEH VVLVRGG VKDLPGVRYHIVRGTL A+GVKDRQ
Sbjct: 155 VARVRLTSGFEITAYIPGIGHNLQEHFVVLVRGG-VKDLPGVRYHIVRGTLYAIGVKDRQ 214

Query: 121 QGRSSAL 128
           QGRSSAL
Sbjct: 215 QGRSSAL 220

[Close]

BLAST of CmoCh01G009600 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRS 125
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmoCh01G009600 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRS 125
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmoCh01G009600 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 48  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 107
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 108 RGTLDAVGVKDRQQGRS 125
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmoCh01G009600 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-23
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 47  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 106
           ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 107 VRGTLDAVGVKDRQQGRS 125
           +RG  D +G+  R++GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of CmoCh01G009600 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-23
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 47  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 106
           ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 107 VRGTLDAVGVKDRQQGRS 125
           +RG  D +G+  R++GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of CmoCh01G009600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	8.3e-45	94.74	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	2.0e-38	91.86	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q1KXY0	2.6e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	2.6e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	2.6e-38	98.75	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]

BLAST of CmoCh01G009600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	3.1e-63	100.00	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A3S3NSS0	8.8e-58	94.49	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A6A5N1Q8	1.4e-55	92.13	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A0C5G6K8	4.5e-54	98.23	Ribosomal protein S12 OS=Ipomoea batatas OX=4120 GN=rps12 PE=3 SV=1	[more]
A0A220NCX4	7.8e-54	98.23	Ribosomal protein S12 OS=Cressa cretica OX=1465651 GN=rps12 PE=3 SV=1	[more]

BLAST of CmoCh01G009600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932068.1	6.5e-63	100.00	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038896566.1	7.4e-59	96.06	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038902483.1	2.2e-58	95.28	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
RWR98012.1	1.8e-57	94.49	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]
KAF1876942.1	2.9e-55	92.13	hypothetical protein Lal_00033867 [Lupinus albus]	[more]

BLAST of CmoCh01G009600 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	1.2e-38	100.00	ribosomal protein S12A	[more]
ATCG01230.1	1.2e-38	100.00	ribosomal protein S12B	[more]
ATCG00905.1	1.2e-38	100.00	ribosomal protein S12C	[more]
AT2G07675.1	4.1e-23	62.82	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	4.1e-23	62.82	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 86..103 score: 88.58 coord: 67..86 score: 75.14 coord: 103..119 score: 64.3 coord: 119..127 score: 32.37 coord: 51..66 score: 91.32
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 42..122 e-value: 3.8E-30 score: 103.9
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 17..126
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 52..59
None	No IPR available	GENE3D	2.40.50.140		coord: 2..126 e-value: 2.7E-46 score: 158.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 17..126
IPR005679	Ribosomal protein S12, bacterial-type	TIGRFAM	TIGR00981	TIGR00981	coord: 35..124 e-value: 1.2E-46 score: 155.6
IPR005679	Ribosomal protein S12, bacterial-type	CDD	cd03368	Ribosomal_S12	coord: 48..119 e-value: 6.39254E-54 score: 162.688
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 44..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G009600.1	CmoCh01G009600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome