CmoCh01G008630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G008630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 4598104 .. 4598648 (+)
RNA-Seq Expression	CmoCh01G008630
Synteny	CmoCh01G008630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTGGAAACTGGAAAATCTTGCAAATATCCATTCATCACTTCTCTTTTGATCTTTAGTTTGCTTTATTTTTATTTTAGAGTATATTTCAGTGGTTTATCTCTTTGATATTTTAAACACGCATGTTAGCACAAGCGGGATTGCTCATCTTGAGTTTCGTAACCAGCAACGTCAAAATCAGTATTTCCCCCTTTTCTGAAGTTGTTACAGTGCCAAAATCATTTTTAATGAATAGTTATAATGGTTGATATAGAATTCTGCCAATTCAAGAAAAGTCTTTTTTACTCATGAACTTGTTAGATAGTCTTCTGTGCTTTCCCTTCTAGGATGGTTGCTTTCATTTGTTATAAGAACTTCATAAGAAACTGAAAGGTGTATCTCATTGACATTTCTAATTAACAGCGGGCGGTGGCACGGTTGATCATTCTGCAATGGTAGCATTCTATTCCGAGAGAGACGAACTGCGGAACAAGTGGAGGACTAAAGAACTCTCCAGCCCAACTCCGGCAGATTCAAAAGGTTCATGCGGCTCTGGCTATTAA

mRNA sequence

ATGATGGTGGAAACTGGAAAATCTTGCAAATATCCATTCATCACTTCTCTTTTGATCTTTACGGGCGGTGGCACGGTTGATCATTCTGCAATGGTAGCATTCTATTCCGAGAGAGACGAACTGCGGAACAAGTGGAGGACTAAAGAACTCTCCAGCCCAACTCCGGCAGATTCAAAAGGTTCATGCGGCTCTGGCTATTAA

Coding sequence (CDS)

ATGATGGTGGAAACTGGAAAATCTTGCAAATATCCATTCATCACTTCTCTTTTGATCTTTACGGGCGGTGGCACGGTTGATCATTCTGCAATGGTAGCATTCTATTCCGAGAGAGACGAACTGCGGAACAAGTGGAGGACTAAAGAACTCTCCAGCCCAACTCCGGCAGATTCAAAAGGTTCATGCGGCTCTGGCTATTAA

Protein sequence

MMVETGKSCKYPFITSLLIFTGGGTVDHSAMVAFYSERDELRNKWRTKELSSPTPADSKGSCGSGY

Homology

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BLAST of CmoCh01G008630 vs. NCBI nr
Match: KAG6607483.1 (Protein LEO1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 19  IFTGGGTVDHSAMVAFYSERDELRNKWRTKELSSPTPADSKGSCGSGY 67
           I TGGGTVDHSAMVAFYSERDELRNKWRTKEL+SPT ADSKGSCGSGY
Sbjct: 608 INTGGGTVDHSAMVAFYSERDELRNKWRTKELTSPTLADSKGSCGSGY 655

The following BLAST results are available for this feature:

BLAST of CmoCh01G008630 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008630 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607483.1	1.8e-16	93.75	Protein LEO1-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh01G008630 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G008630.1	CmoCh01G008630.1	mRNA