CmoCh01G008130 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G008130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionzingipain-2-like
LocationCmo_Chr01: 4332049 .. 4333159 (+)
RNA-Seq ExpressionCmoCh01G008130
SyntenyCmoCh01G008130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCAATTCGTTCAAAAGGATATACCACGATAGTCATAACGTGAATTCAATGATTCGACGCCATCCTATTGCAGGTGCTGTAAAAATTACTGACGAATTTAGAAATTCTGAAAATGTAAGTATCACGTATGAAAATTTTAAATTACGGATATTTTTTTTATAAAAAATTGTGTAATTGTTAAAGTAATTTATTCACTAGTTTGTAAGGTTAACTAACTTAAAAGTAATTTATTCACTTAACTAACTTATCTTGTTTAAATATTGTAGAAGATGTATTGCGGGCCGGAAGATGTCAATATATTGTCAAAGGCTTCTCAACCTACAGTATTAGTGGTTGGATTTGGAGAGGAGGTAAATGGAGAAAAATATTGGTTAATAAAAAATTCATGAGGAGAAGCCTGGTCTTGGTCTATGCAAAAATTAGTCAAAATATTGTCGAAGAAGGCCGCAAACATCTAATTGAGAGATTGTCTTATCCTATTATTGAAGGGCAAAATTTGTAAACTTAGATGTATATGTAATCTCAGGTGTATACATATTCACATATTCTTTACTCTACAAGGATCATAACATTTAGTTTGAGTTTTATTTTCTTATGGTAAATGAGGCAAAATGTATTCGTATCATTTAAACCACACATATGTTCTATCCTTTTAACATTTTTGACTATCTATTCTATTCTCTAACTTGACAATACAATAAATATGTCTTTTAATAGCATTTTTAATCAAAATATGATATCCCCCTCCCTTTCCTCCTATCGTTTCTTTTTCACCTTTCCCCTTCTCTCTTCTCTTATTTCTTTAATTCTCTCTTCTCCCTTTCCTATTCTATTCTCTAACTTAGAAAATACAATAAATATGGAAGATCAAAACACCTGTGAGTAGAATATAGGTCAGAAGGCTCCACAAAGTCCAAAAGGTAAACGCCGGCTGTATGATGTCGAGGAAGCTGCTCTGTTCTGAAAAGAAAACCTTTCAATAGTGAAATTTAATGTTTGTGCCAACGAGGTTGAATAAGGGAAAATGCAGGAGAAAAGACGACCTGAGAGAATTGTAGACAGTATTGGAGAAGAAATTACTCGTAAGAGAAGCGGCAAGAATTAA

mRNA sequence

ATGAAAATCAATTCGTTCAAAAGGATATACCACGATAGTCATAACGTGAATTCAATGATTCGACGCCATCCTATTGCAGGTGCTGTAAAAATTACTGACGAATTTAGAAATTCTGAAAATAAGATGTATTGCGGGCCGGAAGATGTCAATATATTGTCAAAGGCTTCTCAACCTACAGTATTAGTGGTTGGATTTGGAGAGGAGGAGAAAAGACGACCTGAGAGAATTGTAGACAGTATTGGAGAAGAAATTACTCGTAAGAGAAGCGGCAAGAATTAA

Coding sequence (CDS)

ATGAAAATCAATTCGTTCAAAAGGATATACCACGATAGTCATAACGTGAATTCAATGATTCGACGCCATCCTATTGCAGGTGCTGTAAAAATTACTGACGAATTTAGAAATTCTGAAAATAAGATGTATTGCGGGCCGGAAGATGTCAATATATTGTCAAAGGCTTCTCAACCTACAGTATTAGTGGTTGGATTTGGAGAGGAGGAGAAAAGACGACCTGAGAGAATTGTAGACAGTATTGGAGAAGAAATTACTCGTAAGAGAAGCGGCAAGAATTAA

Protein sequence

MKINSFKRIYHDSHNVNSMIRRHPIAGAVKITDEFRNSENKMYCGPEDVNILSKASQPTVLVVGFGEEEKRRPERIVDSIGEEITRKRSGKN
Homology
[Close]
BLAST of CmoCh01G008130 vs. ExPASy TrEMBL
Match: A0A6J1GBS9 (zingipain-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452536 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-14
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 1   MKINSFKRIYHDSHNVNSMIRRHPIAGAVKITDEFRNSENKMYCGPEDVNILSKASQPT- 60
           MKINSF+RIYHDS +VNS++  HPI G ++ T EFR+ E+++Y GPEDVN L   + P+ 
Sbjct: 91  MKINSFRRIYHDSDDVNSILLHHPITGVIRATMEFRSLEDEIYYGPEDVNTLLDINTPSH 150

Query: 61  -VLVVGFGEEEKRRPERIVDSIGE 83
            VLVVGFGE  +++   I +S GE
Sbjct: 151 AVLVVGFGEHNEQKYWIIKNSWGE 174

[Close]
BLAST of CmoCh01G008130 vs. NCBI nr
Match: XP_022949074.1 (zingipain-2-like [Cucurbita moschata])

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-14
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 1   MKINSFKRIYHDSHNVNSMIRRHPIAGAVKITDEFRNSENKMYCGPEDVNILSKASQPT- 60
           MKINSF+RIYHDS +VNS++  HPI G ++ T EFR+ E+++Y GPEDVN L   + P+ 
Sbjct: 91  MKINSFRRIYHDSDDVNSILLHHPITGVIRATMEFRSLEDEIYYGPEDVNTLLDINTPSH 150

Query: 61  -VLVVGFGEEEKRRPERIVDSIGE 83
            VLVVGFGE  +++   I +S GE
Sbjct: 151 AVLVVGFGEHNEQKYWIIKNSWGE 174

[Close]
BLAST of CmoCh01G008130 vs. NCBI nr
Match: XP_023524541.1 (zingipain-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 1   MKINSFKRIYHDSHNVNSMIRRHPIAGAVKITDEFRNSENKMYCGPEDVNILSKASQPT- 60
           +KINSFKRIYHD  +V+S++  HPI G ++ T EF++ E+++Y GPEDVN L   + P+ 
Sbjct: 69  IKINSFKRIYHDRDDVDSVLLHHPITGVIRATLEFKSLEDEIYYGPEDVNTLLDINTPSH 128

Query: 61  -VLVVGFGEEEKRRPERIVDSIGE 83
            VLVVGFGE  +++   I +S GE
Sbjct: 129 AVLVVGFGEHNEQKYWIIKNSWGE 152

The following BLAST results are available for this feature:
BLAST of CmoCh01G008130 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G008130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GBS92.0e-1453.57zingipain-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452536 PE=3 SV=1[more]
BLAST of CmoCh01G008130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949074.14.0e-1453.57zingipain-2-like [Cucurbita moschata][more]
XP_023524541.12.2e-1250.00zingipain-2-like [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh01G008130 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G008130.1CmoCh01G008130.1mRNA