CmoCh01G008010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G008010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Sucrose synthase
Location	Cmo_Chr01: 4213593 .. 4214682 (-)
RNA-Seq Expression	CmoCh01G008010
Synteny	CmoCh01G008010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTACTCTCTGTTGTTTAGAAAATTGGTAAGCATTGGAGACTTGAATCTAATGATATTAAGCTTATCAATTCTTTTAAGCACTCTGAATCCTGTTTCAGGTGAAGAACGTTCCAATCCCTAGTGAAGAAACCTTGCCAGCAACCGTGACGCCGCAGCCGACATCGGAGCTACGTTTCCGGGGTTCGGCTGCTCCTCAGCCTCAGCTGGGACAAAGGCAAGTTATCTGCTTTTGGTTAATTTGTTGCGATCTTATAACTCAACATTCTTGCACGTATACAATAGGAATGTTTTGGTTTTTTTAGTTCAACAACAGGGGCAGAGGTTTGAAATCTCTAATCTTTTAACCTTGGTCGTATGTTTTAACTAGTTGAACTATACTTAGACGGACCCAATATGAAGCATAACCTGTTGTAATCTTATAACTCAACATTCCTGCACATACATAATAGGGGGACGGAGGTTTGAAACCTCTAATCTTTTAACCTTAGTCGTATGTTTTAACCAGTTGAACTATACATAGACGGACCCAATATGAAGCATAACTTGTAACTCAACACTCCTGCACATACATAGCAGGGGACGGAGGTTTGAAACCTCTAATCTTTAAACCTTAGTCGTATGCTTTAACCAGTTGAACTATAATTAAACGGACCCAATATGAACTATAACCTGTTGTAATCTTATAACTCAACACCACTCCCACGTAATAGGGGACGGAGGTGTGAAACCTCTAATCTTTTAACCTTAGTTGTATGATTTAACCAAATCCGACTCGATTCGAACTTAAAAGCGTGCTTTTTAACTCAGCAGGAATGGAGGGAGTTCAGTGGAGCAGCAGCAGGGCCAGAGCGGCAATGGGCTATCAAAAACCATAAAAGGAATATGCTTTTTGACTGGCTCTCTCTTGGTAGCTTACTTTATGCTGAACAAGATTTCTGGAGTAGATCAAGCCTATGTTGATTTACCATTATAGCCTTTGAATTATTCAATTATATTTATGTAAATTAATTATGATAATTACTGCCTCTTGAGGCTGCCAACCTACATTAATAAAATTTACCCCACTCAGTAACCAATTTACCCAC

mRNA sequence

ATGTTCTACTCTCTGTTGTTTAGAAAATTGGTAAGCATTGGAGACTTGAATCTAATGATATTAAGCTTATCAATTCTTTTAAGCACTCTGAATCCTGTGAAGAACGTTCCAATCCCTAGTGAAGAAACCTTGCCAGCAACCGTGACGCCGCAGCCGACATCGGAGCTACGTTTCCGGGGTTCGGCTGCTCCTCAGCCTCAGCTGGGACAAAGGCAAGAATGGAGGGAGTTCAGTGGAGCAGCAGCAGGGCCAGAGCGGCAATGGGCTATCAAAAACCATAAAAGGAATATGCTTTTTGACTGGCTCTCTCTTGGTAGCTTACTTTATGCTGAACAAGATTTCTGGAGTAGATCAAGCCTATGTTGATTTACCATTATAGCCTTTGAATTATTCAATTATATTTATGTAAATTAATTATGATAATTACTGCCTCTTGAGGCTGCCAACCTACATTAATAAAATTTACCCCACTCAGTAACCAATTTACCCAC

Coding sequence (CDS)

ATGTTCTACTCTCTGTTGTTTAGAAAATTGGTAAGCATTGGAGACTTGAATCTAATGATATTAAGCTTATCAATTCTTTTAAGCACTCTGAATCCTGTGAAGAACGTTCCAATCCCTAGTGAAGAAACCTTGCCAGCAACCGTGACGCCGCAGCCGACATCGGAGCTACGTTTCCGGGGTTCGGCTGCTCCTCAGCCTCAGCTGGGACAAAGGCAAGAATGGAGGGAGTTCAGTGGAGCAGCAGCAGGGCCAGAGCGGCAATGGGCTATCAAAAACCATAAAAGGAATATGCTTTTTGACTGGCTCTCTCTTGGTAGCTTACTTTATGCTGAACAAGATTTCTGGAGTAGATCAAGCCTATGTTGA

Protein sequence

MFYSLLFRKLVSIGDLNLMILSLSILLSTLNPVKNVPIPSEETLPATVTPQPTSELRFRGSAAPQPQLGQRQEWREFSGAAAGPERQWAIKNHKRNMLFDWLSLGSLLYAEQDFWSRSSLC

Homology

[Close]

BLAST of CmoCh01G008010 vs. ExPASy TrEMBL
Match: A0A6J1GDA3 (Sucrose synthase OS=Cucurbita moschata OX=3662 GN=LOC111452903 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 49/71 (69.01%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 1   MFYSLLFRKLVSIGDLNLMILSLSILLSTLNPVKNVPIPSEETLPATVTPQPTSELRFRG 60
           MFYSLLFRKL                      VKNVPIPSEETLPATVTPQPTSELRFRG
Sbjct: 794 MFYSLLFRKL----------------------VKNVPIPSEETLPATVTPQPTSELRFRG 842

Query: 61  SAAPQPQLGQR 72
           SAAPQPQLGQR
Sbjct: 854 SAAPQPQLGQR 842

[Close]

BLAST of CmoCh01G008010 vs. ExPASy TrEMBL
Match: A0A6J1KD72 (Sucrose synthase OS=Cucurbita maxima OX=3661 GN=LOC111493280 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.8e-10
Identity = 48/75 (64.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 1   MFYSLLFRKLVSIGDLNLMILSLSILLSTLNPVKNVPIPSEETLPA----TVTPQPTSEL 60
           MFYSLLFRKL                      VKNVPIPSEETLPA    TVTPQPT EL
Sbjct: 794 MFYSLLFRKL----------------------VKNVPIPSEETLPAPTATTVTPQPTPEL 846

Query: 61  RFRGSAAPQPQLGQR 72
           RFRGSAAPQPQLGQR
Sbjct: 854 RFRGSAAPQPQLGQR 846

[Close]

BLAST of CmoCh01G008010 vs. NCBI nr
Match: KAG6607415.1 (Sucrose synthase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.6 bits (431), Expect = 8.1e-39
Identity = 98/149 (65.77%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 1   MFYSLLFRKLVSIGDLNLMILSLSILLSTLNPVKNVPIPSEETLPATVTPQPTSELRFRG 60
           MFYSLLFRKL                      VKNVPIPSEETLPATVTPQPTSELRFRG
Sbjct: 843 MFYSLLFRKL----------------------VKNVPIPSEETLPATVTPQPTSELRFRG 902

Query: 61  SAAPQPQLGQRQ----------------------------EWREFSGAAAGPERQWAIKN 120
           SAAPQPQLGQRQ                            EWREFSGAAAGPE QWAIKN
Sbjct: 903 SAAPQPQLGQRQVICFWLICCDLITQHSCVYNRNVLVFAEEWREFSGAAAGPEWQWAIKN 962

Query: 121 HKRNMLFDWLSLGSLLYAEQDFWSRSSLC 122
           HKRNMLFDWLSLGSLLYAEQDFWSRSSLC
Sbjct: 963 HKRNMLFDWLSLGSLLYAEQDFWSRSSLC 969

[Close]

BLAST of CmoCh01G008010 vs. NCBI nr
Match: XP_022949594.1 (sucrose synthase 6-like [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-12
Identity = 49/71 (69.01%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 1   MFYSLLFRKLVSIGDLNLMILSLSILLSTLNPVKNVPIPSEETLPATVTPQPTSELRFRG 60
           MFYSLLFRKL                      VKNVPIPSEETLPATVTPQPTSELRFRG
Sbjct: 794 MFYSLLFRKL----------------------VKNVPIPSEETLPATVTPQPTSELRFRG 842

Query: 61  SAAPQPQLGQR 72
           SAAPQPQLGQR
Sbjct: 854 SAAPQPQLGQR 842

[Close]

BLAST of CmoCh01G008010 vs. NCBI nr
Match: KAG7037084.1 (Sucrose synthase 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-12
Identity = 49/72 (68.06%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1   MFYSLLFRKLVSIGDLNLMILSLSILLSTLNPVKNVPIPSEETLPATVTPQPTSELRFRG 60
           MFYSLLFRKL                      VKNVPIPSEETLPATVTPQPTSELRFRG
Sbjct: 826 MFYSLLFRKL----------------------VKNVPIPSEETLPATVTPQPTSELRFRG 875

Query: 61  SAAPQPQLGQRQ 73
           SAAPQPQLG+RQ
Sbjct: 886 SAAPQPQLGRRQ 875

[Close]

BLAST of CmoCh01G008010 vs. NCBI nr
Match: XP_023523280.1 (sucrose synthase 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11
Identity = 47/71 (66.20%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1   MFYSLLFRKLVSIGDLNLMILSLSILLSTLNPVKNVPIPSEETLPATVTPQPTSELRFRG 60
           MFYSLLFRKL                      VKNVPIPSEETLPATVTPQPT ELRFRG
Sbjct: 794 MFYSLLFRKL----------------------VKNVPIPSEETLPATVTPQPTPELRFRG 842

Query: 61  SAAPQPQLGQR 72
           SAAPQP+LGQR
Sbjct: 854 SAAPQPRLGQR 842

[Close]

BLAST of CmoCh01G008010 vs. NCBI nr
Match: XP_022998695.1 (sucrose synthase 5-like [Cucurbita maxima])

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-10
Identity = 48/75 (64.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 1   MFYSLLFRKLVSIGDLNLMILSLSILLSTLNPVKNVPIPSEETLPA----TVTPQPTSEL 60
           MFYSLLFRKL                      VKNVPIPSEETLPA    TVTPQPT EL
Sbjct: 794 MFYSLLFRKL----------------------VKNVPIPSEETLPAPTATTVTPQPTPEL 846

Query: 61  RFRGSAAPQPQLGQR 72
           RFRGSAAPQPQLGQR
Sbjct: 854 RFRGSAAPQPQLGQR 846

The following BLAST results are available for this feature:

BLAST of CmoCh01G008010 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GDA3	1.8e-12	69.01	Sucrose synthase OS=Cucurbita moschata OX=3662 GN=LOC111452903 PE=3 SV=1	[more]
A0A6J1KD72	3.8e-10	64.00	Sucrose synthase OS=Cucurbita maxima OX=3661 GN=LOC111493280 PE=3 SV=1	[more]

BLAST of CmoCh01G008010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607415.1	8.1e-39	65.77	Sucrose synthase 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022949594.1	3.8e-12	69.01	sucrose synthase 6-like [Cucurbita moschata]	[more]
KAG7037084.1	3.8e-12	68.06	Sucrose synthase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023523280.1	4.2e-11	66.20	sucrose synthase 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998695.1	7.9e-10	64.00	sucrose synthase 5-like [Cucurbita maxima]	[more]

BLAST of CmoCh01G008010 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G008010.1	CmoCh01G008010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity