CmoCh01G007510 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G007510
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 3884341 .. 3887397 (+)
RNA-Seq ExpressionCmoCh01G007510
SyntenyCmoCh01G007510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGAGCCTTATTCACAGAAAGCTTCTTGAAAACCGAGGTGAGGAAATTGGCTCGAGAGGGATGTGGGTTGGTGTTATATTTATGCTTGGAGGGTGTGTGTGAGGGTGAGGAGAAATAGGATGGTGGGGGCGTGAGAGGGGAAAGGAGTGAGCCATGGTCCCTGAAATTGGCCTTGGGAGTGCCTGGCTCGGACTCCCATATGAATGGCACTGTGGCTGATACTCCTGTGTGGTAATCTTCATCCACTGTCAATATATCATCCCTTGTTTTGAGGCTTTTAAGCCTCATTTTCCCAAATTTGCCTCCAAAATCCCCTGAATTTGTTGACATTGTTGTTGATTTTGATGCGATGATGATCTGCAACTTCAAATGTTTGTCATTTGTGCATAATATTTAGACGATCAAAGAAGAAAGAGGTAAAAAGAAGAGATTTTGAGGTGAACCCATGTGAGAAAATGTACCTGTTTCTAATGGGTAGTCGTCAAAAATGGAAAGAAATCAATGTGGAGCTGCCATTGTTGTTGTTGTTGTTGGTTGAGTATCCATTTAAGCCATTGATATTGCAGAGGGTAGCTGAGAATTGTTCAATAATGCTATTATTGCCTTTGCCTTGTTTTTGGGGGGAAAGAGTAATGGCATGATTGAACCATCCGTGGCTAAATATGATGATTGGTTTTCTACCACTAATGTTGATGACAGTACGAGGAAAAAAGGTTTGTTTTTGTGGTTTTCCTGTTTTCCTGTCTTGTTGGGAGATGAATTTTTAGTGGACGAAGATTGAATTGGATCGGATTGGATCGGGTATGAGCCTTGTTTTCTACGGTGAAGTTTGTTTGAAGAGAAAAGTTGACCGGTAAAAGAATGAAAAATAATACACCGGTTATGAGGGGTTTGTAATTGTCACACTAGCTCCGATACTTGGATTAAATTTAAGTGTAGCAATGGTTTGATTTCTCGAAATAGAAGAGTATTTTTATGACCCATTTAAGATAGAAGAGTAGTCGGGTTCTTCAATATTGGTTCGATGTTGGCATGTATTGACATTTTTTTATATTCCTTTTTTAATTAGGTTAACAATGAACTGAACTAGGACCACACGGTGAGTTGTGGGGTACACAAAGCCGATCAGGGCCCAATTCTCCTCGTCTCTTTTTTCTTGGTAGTCTGGTTCTTTTTCAATATTGATTTTTCTTCTATTCCTTTTTGAATTAGGTTAAAAGGGATCACACGAGTTGTGAGCCTGCCAAGCCGATCAGGGCCCAATTCTCCTCGTTTTCTCGGTAGTCTGGTTCTTCTTCAATGTTGGTTCGATGTTGTCATGTGTTCGACATTTTTTTGGTCTTATTTCACCGACCCAATAATTTAAGCCATAGTTTGGTATGTGAAATATATGCAATAAAGCTCACATTTACTAAGTTAGGTGGTTTTTATCTATATCTATTATGAGTTATAATTCCAAGCAGAATCCAAATCCATCCATTTGTTCTACAATTGGATAAACGTAGGAGAATTGGTCATTTCAGTAGATGATGTTAAATTCCTCCTTCTATCAGGTTGTTGTTGCTGCAACTTCATACCATTCCCTTCTAGTTCGTCTTCCGCTCCGTCTTCGATCATTTTGGCCCCGGACATACCTGCGACGATATAAGATGGGGAACACGGAGGAGACTCGAGTTCTTTACCACATCCATGTAGGTCATAAGACATATCTGCATCATTATAAGGAGTACATGAACGAGGCGGCACTCGTTTGTTGCCCTCGAGTTCTTTTTCGCATCCATGCAGTTCATTTGGTATTCCATCTGTACCTGTTTGGTAATCCATCGACTTTCGAGGAATTTCAACTTTCATCGATCTATATAACTTGGACCTGTTTGGTAATCCAGAAACTTTGACCCGCTCATATAAGTAATGATTCGCTCCATTCTCCAACCGATGTGGGATCTCACATTTACTTCAATAACAAAGCTATTGTCCAACGATTTCGACAGAATTATATACCTTTGCTCATACCTACACCAAGCTGGAAGTGTGAGCATTGTGTATGCAAGTTTAACTTTGTTGGCAACGCCAGAGAGAGATTTGAAAGTTGCAGCAACACTTGTTACAGCCAACGACTCATTCGGATGCTGCCAGGCCCATTCAAACTGCATCCATACTTAGAACATCAAATTCTAGCATTGCTGGAAAGTTAATCAAGACAGAAATCCTCGCATGGTTTGGTAAATCTGTATGCCAAAAATCCCTAAAATGTTCATCCTAGGAGGCAATCGAGATATATAAAAAGATGTATAGCTCAAAGCCTGGAAATGTAACCTGAAGAGCAGAGACTAGAGTGGGAAAGCCATAGATGCACAACACCATCTCTCATGGTCTCTTCCTCTTAGTACGCCACGCACCGCATCTAATTTCACCATTGTGCTGCCTGATTCTGCGTTTAGGGTTCACTGTGAATCTGAAATTCAATATAAACAGTAATCCAATCAGTTCACTGCAGATTGATTTACACATTTCCTATATTTCTTGATGTTTTCCCTCAATCAATTTATGCAGAAAGCGAGAGAGGAACAGATTCAAAGATCGTAAAACGATTTTCAGTATCGGGGAGTAGAGGAACAGATTCGAGCATCCAGAGATCAATTTATGCAGAGAGCGAGAGATTTGCAGATTCAAAGATCGTAAAACAATTTCCAGTATCGGAGTATCGGAACAGATTCGAGCATCAAGAAATCGTGAAAATGGAGGATTTCAAGCCATTATTTCATAGAGAAGCAGAAAATTTGTTCGAGAAGAAGGAAAGGATTCGAACCCGATATAGGTATGGCCTTTGAAACAAGGGCAGACAGAGGCCAAGAGATAGCATGAAAAGAAGCCGTTCGATTCGTTGCCGCTTCCTTCATCTTCATCGTCTTCCTTCTCCTCCTCCTCTGCAACCGCCGTAGCTTCAGAGATCTCCGATTTCTCTTTCCTCTTCCTCATCTCTCTGTCTCTCTGGAAGAAGAAAATCTGCTCAATAATACAATTAGACCGTTGGCGTACAACTTCAAAGGG

mRNA sequence

ATGGAGAGGAGCCTTATTCACAGAAAGCTTCTTGAAAACCGAGGTGAGGAAATTGGCTCGAGAGGGATGTGGGTTGGTGTTATATTTATGCTTGGAGGGTTAAAAGGGATCACACGAGTTGTGAGCCTGCCAAGCCGATCAGGGCCCAATTCTCCTCGTTTTCTCGGTAGTCTGGTTGTTGTTGCTGCAACTTCATACCATTCCCTTCTAGTTCGTCTTCCGCTCCGTCTTCGATCATTTTGGCCCCGGACATACCTGCGACGATATAAGATGGGGAACACGGAGGAGACTCGAGTTCTTTACCACATCCATGTAGGTCATAAGACATATCTGCATCATTATAAGGAGTACATGAACGAGGCGGCACTCCCAACGACTCATTCGGATGCTGCCAGGCCCATTCAAACTGCATCCATACTTAGAACATCAAATTCTAGCATTGCTGGAAAGTTAATCAAGACAGAAATCCTCGCATGGTTTGAAAGCGAGAGAGGAACAGATTCAAAGATCGTAAAACGATTTTCAGTATCGGGGAGTAGAGGAACAGATTCGAGCATCCAGAGATCAATTTATGCAGAGAGCGAGAGATTTGCAGATTCAAAGATCGTAAAACAATTTCCAGTATCGGAGTATCGGAACAGATTCGAGCATCAAGAAATCGTGAAAATGGAGGATTTCAAGCCATTATTTCATAGAGAAGCAGAAAATTTGTTCGAGAAGAAGGAAAGGATTCGAACCCGATATAGGTATGGCCTTTGAAACAAGGGCAGACAGAGGCCAAGAGATAGCATGAAAAGAAGCCGTTCGATTCGTTGCCGCTTCCTTCATCTTCATCGTCTTCCTTCTCCTCCTCCTCTGCAACCGCCGTAGCTTCAGAGATCTCCGATTTCTCTTTCCTCTTCCTCATCTCTCTGTCTCTCTGGAAGAAGAAAATCTGCTCAATAATACAATTAGACCGTTGGCGTACAACTTCAAAGGG

Coding sequence (CDS)

ATGGAGAGGAGCCTTATTCACAGAAAGCTTCTTGAAAACCGAGGTGAGGAAATTGGCTCGAGAGGGATGTGGGTTGGTGTTATATTTATGCTTGGAGGGTTAAAAGGGATCACACGAGTTGTGAGCCTGCCAAGCCGATCAGGGCCCAATTCTCCTCGTTTTCTCGGTAGTCTGGTTGTTGTTGCTGCAACTTCATACCATTCCCTTCTAGTTCGTCTTCCGCTCCGTCTTCGATCATTTTGGCCCCGGACATACCTGCGACGATATAAGATGGGGAACACGGAGGAGACTCGAGTTCTTTACCACATCCATGTAGGTCATAAGACATATCTGCATCATTATAAGGAGTACATGAACGAGGCGGCACTCCCAACGACTCATTCGGATGCTGCCAGGCCCATTCAAACTGCATCCATACTTAGAACATCAAATTCTAGCATTGCTGGAAAGTTAATCAAGACAGAAATCCTCGCATGGTTTGAAAGCGAGAGAGGAACAGATTCAAAGATCGTAAAACGATTTTCAGTATCGGGGAGTAGAGGAACAGATTCGAGCATCCAGAGATCAATTTATGCAGAGAGCGAGAGATTTGCAGATTCAAAGATCGTAAAACAATTTCCAGTATCGGAGTATCGGAACAGATTCGAGCATCAAGAAATCGTGAAAATGGAGGATTTCAAGCCATTATTTCATAGAGAAGCAGAAAATTTGTTCGAGAAGAAGGAAAGGATTCGAACCCGATATAGGTATGGCCTTTGA

Protein sequence

MERSLIHRKLLENRGEEIGSRGMWVGVIFMLGGLKGITRVVSLPSRSGPNSPRFLGSLVVVAATSYHSLLVRLPLRLRSFWPRTYLRRYKMGNTEETRVLYHIHVGHKTYLHHYKEYMNEAALPTTHSDAARPIQTASILRTSNSSIAGKLIKTEILAWFESERGTDSKIVKRFSVSGSRGTDSSIQRSIYAESERFADSKIVKQFPVSEYRNRFEHQEIVKMEDFKPLFHREAENLFEKKERIRTRYRYGL
Homology
[Close]
BLAST of CmoCh01G007510 vs. ExPASy TrEMBL
Match: A0A6J1GBR2 (uncharacterized protein LOC111452532 OS=Cucurbita moschata OX=3662 GN=LOC111452532 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 161 ESERGTDSKIVKRFSVSGSRGTDSSIQRSIYAESERFADSKIVKQFPVSEYRNRFEHQEI 220
           +SERGTDSKIVKRFSVSGSRGTDSSIQRSIYAESERFADSKIVKQFPVSEYRNRFEHQEI
Sbjct: 42  KSERGTDSKIVKRFSVSGSRGTDSSIQRSIYAESERFADSKIVKQFPVSEYRNRFEHQEI 101

Query: 221 VKMEDFKPLFHREAENLFEKKERIRTRYRYGL 253
           VKMEDFKPLFHREAENLFEKKERIRTRYRYGL
Sbjct: 102 VKMEDFKPLFHREAENLFEKKERIRTRYRYGL 133

[Close]
BLAST of CmoCh01G007510 vs. NCBI nr
Match: XP_022949070.1 (uncharacterized protein LOC111452532 [Cucurbita moschata])

HSP 1 Score: 176.4 bits (446), Expect = 3.1e-40
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 161 ESERGTDSKIVKRFSVSGSRGTDSSIQRSIYAESERFADSKIVKQFPVSEYRNRFEHQEI 220
           +SERGTDSKIVKRFSVSGSRGTDSSIQRSIYAESERFADSKIVKQFPVSEYRNRFEHQEI
Sbjct: 42  KSERGTDSKIVKRFSVSGSRGTDSSIQRSIYAESERFADSKIVKQFPVSEYRNRFEHQEI 101

Query: 221 VKMEDFKPLFHREAENLFEKKERIRTRYRYGL 253
           VKMEDFKPLFHREAENLFEKKERIRTRYRYGL
Sbjct: 102 VKMEDFKPLFHREAENLFEKKERIRTRYRYGL 133

The following BLAST results are available for this feature:
BLAST of CmoCh01G007510 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G007510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GBR21.5e-4098.91uncharacterized protein LOC111452532 OS=Cucurbita moschata OX=3662 GN=LOC1114525... [more]
BLAST of CmoCh01G007510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949070.13.1e-4098.91uncharacterized protein LOC111452532 [Cucurbita moschata][more]
BLAST of CmoCh01G007510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G007510.1CmoCh01G007510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane