CmoCh01G007200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G007200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Rab3 GTPase-activating protein catalytic subunit
Location	Cmo_Chr01: 3706251 .. 3709744 (+)
RNA-Seq Expression	CmoCh01G007200
Synteny	CmoCh01G007200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATAATAGCTCTTGGATGTGCACAGGATTTGAATTGATTGCCTCATGGTCAGAGAAGATGGTAGAGAGCTCCTTGGAAATGGCTGAGTTGGAAAATTCTTCACCTCATGAAGCTAAGAAATGGATTTTGTTTCCAATTCTATCACCAAATATGTAAGAAGTGCAATGTTTGGTTGGATATATAATTTTTTTTCCCGTAAAACCATGAACATACTTGTACGGTACACCATTATTTTGAAAGCTTGACAACAGATCAAAAAGAAAAATCTTAGCTCTTGACAAATAGAAAAAAGCTTCTATTTTTGTGATATTCTCATTTTTATGCTTAGATATGACTGTTCAATATATGACAGTACTAGAGGTTAGTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTACAAAGCATTCATTTACAAAATGAATGAAATAAGCCAATGAGATTGCGGAAGGACCCTCAAGGAGGAGCCACCAAAATTTAGCACCCCAAACTTGTTAAGGATCTCTTTCCACCGCGTGAGAGGTTCTATTCCATTTCCTCTTGTGAAAAACTTTCCACAAAACTACTCCAACAACATTTTACTAAATAAATTTTCTGTTCCTTTGATTGTGGTGCAAGAGATAGGGTAGAGAAACCCAGTGATTAAAGTGACTGCAATTTGTTAAAAAATAAAAATCTAGGTTACGAGGCAGTAAGTGAACACGTCTTTTCACAATTTCACACAAAATTTCTTCGTATTCTAGAGTATCATAGAGGTAAGGAATAACATCAATAAAAATTTAAACGATCTGTCGAAGTAGAAAAAACACTCATTGATTTTAAATGATGAATTATACATATTCTGTGCATGACATTTTTCTCATTGTACGCTTTTGCTGAAGGTTTGATATCATGTTTTTGTTAATGTGATTGCATTTTGTATACGTTTCTTTGAATAATGAAGTTTCTTATATTGTTCGTCATTTCCTGCTGTTTTCTTTTACGATGTTTCATTGTTTGTTGCATGTTACTTGAGTATTGATTTTCACTTTGTTGCCGATCCTAAATAAATGAGAATTTGATCAAGAATTTTATATAAATGAGAATTTGATCAAGAATTTTATGTATAAAATTTGTTAAATTACAAATTTAGTCATTGAGTTTTGAGGTTTGTATCTACTTGATTTTTTAACTTTCATAATTACAAAATTTAGACTATGGTCTTTTGAATTTTTTAAAATTCATGGATCTGCTAGAATTTGTTTTTGATATTTTAGGATTCTGTTAGACACAAAATTCAAATTATCAATTAGTTATAAAAAATTGACAAATCAATTAGTTATAAAAAATTTCAAATTTGTCAGGTACTGGAAGTTCAAAAACTAATTAGATATAAAATTAAAAGTTCTGGAACCTATTGGACACTTAATATTCAAGGACCAAATGTACACAAACCTCGAAGTTAAGGGCTGAACTTCTAATTTAAACTATAAAATTTCATATGAGGGCATAAATCATATGTGTTGACTACTGATTTTTGTAGGTACCTTGTAGTTCTACTTCGTCTAGAAATCTTAATTTATTTTTTATTTTTTCATGATTATTTAGAACTGATACCACCATGGGAAACAGAGTTGGATTTTCCTCTCAGTTGTATCTTCTAATTGATGCATTAGATATGTCCTTCCAAGCTCAATTTATGGAAGATTTTGTCTCAGGTAAGTATTGTTCATAACCATGCAGTTACATGTAAATGTTTAGTTTTAATACGTACTCCGTCCTCTTTTTTGTTTTGGCAGTTGAGAACCCAGGTTCAGATAATTTTAAGTCTTCTACAGCAGTACCTCCACCCACAGTTATTGATCGTGTGCTTAAAGAACTCTTTCATGAAGGTAAAAGTGGCAAATTTTAAAAAAACATGAATATGCTCATCACAGCATCCATGAAAATCGTAACCAATTGCATCTTTCAGAATTCAGACACCTTTTAGCTGTTTATGGCTTAAGTGGCCGGTGATAGCTGTCCTTATTATGTCAGTCATTTATAAATTTCTCAGTATATCGAGTTTGCAGCTTATTAACAAATCTCCAGCGCATTCCCGCCTTAGATGGGAGCTGCAATGGAGACACATTATTGTCTATTGAGCTATGTGTCCAAGAACATAGTTCAGAGGATCAGTAAGATCCAGGTTGATGCTTAACAGTGATGTTGTATGATATATAATCATCCATGTATTACGTGCAGGAAAAAAATCCCCTTATTTTGCCAAGGGTGAGCATAGGACTTCTCAAGCAATTAAAGCTGCAGCCCTCGATTCTCTTTTTGCACAGTTTTGTTTACATGTTCTATGGTTTGGAAACTGCAACATACGAGGTATGGTTCCACATACTGGCTCTCTCATGTAAAATCTAGTGGATAGGAGAATAAATACTAGCACATTCAGTTGTTGACATGTTTCTTCAGTCTATTGGTTTCATTTTTTTCTTATTATTTATGTATCTATGTAATGAATTTACAGCAATAGCTACGCTGTGGGTTGAGTTTGTTAGAGAAGTCCGGTGGTGTTGGGACGAGGTACAACCTTTGCCACGAATGCCAATCAGCAGTTCAATTGACCTTTCTAGTTGTTTGATAAACCAAAAACTTCAGATGGTAATTATTTACATCTTCTAAAGACTTATTTTAGAAACTTCCTCCATGCACTCTTTTATACAACGTAGCTTTTTTTTTTTTGGGGGGGGGGGGGGNNNNGGGGGGGGGGGGGGGGGGGTGCTTGAGTTTGGTATTTGTTTATGTCCGGCATTGACACTTCAAATATCTGCAGTTTGGTATTATTAGTGAATGTGACTCCATAGTAAGATGTGTTTAAGCCAGTGACATCATCTCTTTGGGTGGAACACTTTTCTATATGCTCTCATGTGAAATATTGCGTTTCCTAACAAAATGCCAGACCTCTCCTCTAGCTTTTGGAAAAGGACACTCTTCCGAAGATGAGAAAAAGACTGGATTTAATATTAACAAGGTTCCCTTTTGGAAGATTTAA

mRNA sequence

ATGGAGGATAATAGCTCTTGGATGTGCACAGGATTTGAATTGATTGCCTCATGGTCAGAGAAGATGGTAGAGAGCTCCTTGGAAATGGCTGAGTTGGAAAATTCTTCACCTCATGAAGCTAAGAAATGGATTTTGTTTCCAATTCTATCACCAAATATAACTGATACCACCATGGGAAACAGAGTTGGATTTTCCTCTCAGTTGTATCTTCTAATTGATGCATTAGATATGTCCTTCCAAGCTCAATTTATGGAAGATTTTGTCTCAGTTGAGAACCCAGGTTCAGATAATTTTAAGTCTTCTACAGCAGTACCTCCACCCACAGTTATTGATCGTGTGCTTAAAGAACTCTTTCATGAAGGAAAAAAATCCCCTTATTTTGCCAAGGGTGAGCATAGGACTTCTCAAGCAATTAAAGCTGCAGCCCTCGATTCTCTTTTTGCACAGTTTTGTTTACATGTTCTATGGTTTGGAAACTGCAACATACGAGCAATAGCTACGCTGTGGGTTGAGTTTGTTAGAGAAGTCCGGTGGTGTTGGGACGAGGTACAACCTTTGCCACGAATGCCAATCAGCAGTTCAATTGACCTTTCTAGTTGTTTGATAAACCAAAAACTTCAGATGACCTCTCCTCTAGCTTTTGGAAAAGGACACTCTTCCGAAGATGAGAAAAAGACTGGATTTAATATTAACAAGGTTCCCTTTTGGAAGATTTAA

Coding sequence (CDS)

ATGGAGGATAATAGCTCTTGGATGTGCACAGGATTTGAATTGATTGCCTCATGGTCAGAGAAGATGGTAGAGAGCTCCTTGGAAATGGCTGAGTTGGAAAATTCTTCACCTCATGAAGCTAAGAAATGGATTTTGTTTCCAATTCTATCACCAAATATAACTGATACCACCATGGGAAACAGAGTTGGATTTTCCTCTCAGTTGTATCTTCTAATTGATGCATTAGATATGTCCTTCCAAGCTCAATTTATGGAAGATTTTGTCTCAGTTGAGAACCCAGGTTCAGATAATTTTAAGTCTTCTACAGCAGTACCTCCACCCACAGTTATTGATCGTGTGCTTAAAGAACTCTTTCATGAAGGAAAAAAATCCCCTTATTTTGCCAAGGGTGAGCATAGGACTTCTCAAGCAATTAAAGCTGCAGCCCTCGATTCTCTTTTTGCACAGTTTTGTTTACATGTTCTATGGTTTGGAAACTGCAACATACGAGCAATAGCTACGCTGTGGGTTGAGTTTGTTAGAGAAGTCCGGTGGTGTTGGGACGAGGTACAACCTTTGCCACGAATGCCAATCAGCAGTTCAATTGACCTTTCTAGTTGTTTGATAAACCAAAAACTTCAGATGACCTCTCCTCTAGCTTTTGGAAAAGGACACTCTTCCGAAGATGAGAAAAAGACTGGATTTAATATTAACAAGGTTCCCTTTTGGAAGATTTAA

Protein sequence

MEDNSSWMCTGFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYLLIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKGEHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMPISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDEKKTGFNINKVPFWKI

Homology

[Close]

BLAST of CmoCh01G007200 vs. ExPASy Swiss-Prot
Match: Q80UJ7 (Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus OX=10090 GN=Rab3gap1 PE=1 SV=4)

HSP 1 Score: 52.4 bits (124), Expect = 8.3e-06
Identity = 33/102 (32.35%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 130 GEHRTSQAIKAAALDSLFAQ--FCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLP 189
           G++      K+A  DSL  +   CL ++ F +  ++ +A LW EFV E+R+ W+    +P
Sbjct: 439 GDYTLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIP 498

Query: 190 RMPISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDEKKTGFN 230
            +  S S DL  CL++QKLQM +     +  + ++ KKT  +
Sbjct: 499 GL-ASGSPDLRCCLLHQKLQMLN-CCIERKKARDEGKKTSLS 538

[Close]

BLAST of CmoCh01G007200 vs. ExPASy Swiss-Prot
Match: Q15042 (Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens OX=9606 GN=RAB3GAP1 PE=1 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 35/130 (26.92%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 106 PPTVIDRVLKELFHEGKKSPYFAKGEHRTSQAIKAAALDSLFAQ--FCLHVLWFGNCNIR 165
           P  V ++ L         +P     ++      K+A  DSL  +   CL ++ F +  ++
Sbjct: 416 PDAVSEKPLDGTTSTDNNNPPSESEDYNLYNQFKSAPSDSLTYKLALCLCMINFYHGGLK 475

Query: 166 AIATLWVEFVREVRWCWDEVQPLPRMPISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 225
            +A LW EFV E+R+ W+    +P +  S   DL  CL++QKLQM +     K    E +
Sbjct: 476 GVAHLWQEFVLEMRFRWENNFLIPGL-ASGPPDLRCCLLHQKLQMLNCCIERKKARDEGK 535

Query: 226 KKTGFNINKV 234
           K +  ++  +
Sbjct: 536 KTSASDVTNI 544

[Close]

BLAST of CmoCh01G007200 vs. ExPASy Swiss-Prot
Match: P69735 (Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicus OX=10116 GN=Rab3gap1 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 3.2e-05
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 124 SPYFAKGEHRTSQAIKAAALDSLFAQ--FCLHVLWFGNCNIRAIATLWVEFVREVRWCWD 183
           +P    G++      K+A  DSL  +   CL ++ F +  ++ +A LW EFV E+R+ W+
Sbjct: 227 NPAAEAGDYTLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWE 286

Query: 184 EVQPLPRMPISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDEKKT 227
               +P +  S   DL  CL++QKLQM +     +  + ++ KKT
Sbjct: 287 NNFLIPGL-ASGPPDLRCCLLHQKLQMLN-CCIERKKARDEGKKT 329

[Close]

BLAST of CmoCh01G007200 vs. ExPASy Swiss-Prot
Match: Q6NUV0 (Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio OX=7955 GN=rab3gap1 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 9.2e-05
Identity = 36/123 (29.27%), Postives = 60/123 (48.78%), Query Frame = 0


Query: 106 PPTVIDRVLKELFHEGKKSPYFAKGEHRTSQAIKAAALDSLFAQ--FCLHVLWFGNCNIR 165
           P   +D+         ++SP     ++     +K+   DSL  +   C+ ++ F +  +R
Sbjct: 417 PDAALDKADVSEVRPPQQSPDRQSEDYHLYNQLKSCPSDSLTHRLALCICMVNFHHGGVR 476

Query: 166 AIATLWVEFVREVRWCWDEVQPLPRMPISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 225
           A+A LW EFV E+R+ W E   L     S   DL  CL++QKLQM +     +  + +D 
Sbjct: 477 AVAHLWQEFVLEMRYRW-ENNCLIYGLASGPPDLRCCLLHQKLQMLN-CCIERKKARDDG 536

Query: 226 KKT 227
           KK+
Sbjct: 537 KKS 537

[Close]

BLAST of CmoCh01G007200 vs. ExPASy Swiss-Prot
Match: Q642R9 (Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis OX=8355 GN=rab3gap1 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-04
Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 138 IKAAALDSLFAQ--FCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMPISSSI 197
           +K+A  +SL  +   CL ++ F +  ++ +A LW EFV E+R+ W+    +P +  + S 
Sbjct: 449 LKSAPSNSLTYKLALCLCMVNFYHGGVKGVAHLWQEFVLEMRYRWENNFLIPGL-ANGSP 508

Query: 198 DLSSCLINQKLQMTSPLAFGKGHSSEDEKKTG 228
           DL  CL++QKLQM +     K   + DE K G
Sbjct: 509 DLKCCLLHQKLQMLNCCLERK--KARDEGKKG 537

[Close]

BLAST of CmoCh01G007200 vs. ExPASy TrEMBL
Match: A0A6J1GBV8 (Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111452560 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.9e-110
Identity = 201/213 (94.37%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 281 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 340

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG
Sbjct: 341 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 400

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 401 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 460

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 461 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 492

[Close]

BLAST of CmoCh01G007200 vs. ExPASy TrEMBL
Match: A0A6J1GBV2 (Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111452560 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.9e-110
Identity = 201/213 (94.37%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 228 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 287

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG
Sbjct: 288 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 347

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 348 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 407

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 408 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 439

[Close]

BLAST of CmoCh01G007200 vs. ExPASy TrEMBL
Match: A0A6J1K9B0 (Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111492852 PE=3 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109
Identity = 200/213 (93.90%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 281 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 340

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYF+KG
Sbjct: 341 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFSKG 400

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 401 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 460

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 461 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 492

[Close]

BLAST of CmoCh01G007200 vs. ExPASy TrEMBL
Match: A0A6J1K6Y4 (Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111492852 PE=3 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109
Identity = 200/213 (93.90%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 228 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 287

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYF+KG
Sbjct: 288 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFSKG 347

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 348 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 407

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 408 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 439

[Close]

BLAST of CmoCh01G007200 vs. ExPASy TrEMBL
Match: A0A5A7UVM5 (Rab3 GTPase-activating protein catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00740 PE=3 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 4.3e-106
Identity = 193/213 (90.61%), Postives = 201/213 (94.37%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITD+TMGNRVGFS+QLYL
Sbjct: 281 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDSTMGNRVGFSTQLYL 340

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDN KSST VPPPTVIDRVLKELFHEGKKSPYFAKG
Sbjct: 341 LIDALDMSFQAQFMEDFVSVENPGSDNLKSSTVVPPPTVIDRVLKELFHEGKKSPYFAKG 400

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHR SQAIKAA +DSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCW+EVQPLPRMP
Sbjct: 401 EHRNSQAIKAAPVDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWEEVQPLPRMP 460

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 461 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 492

[Close]

BLAST of CmoCh01G007200 vs. NCBI nr
Match: XP_022949104.1 (rab3 GTPase-activating protein catalytic subunit isoform X1 [Cucurbita moschata])

HSP 1 Score: 407.1 bits (1045), Expect = 1.0e-109
Identity = 201/213 (94.37%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 281 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 340

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG
Sbjct: 341 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 400

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 401 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 460

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 461 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 492

[Close]

BLAST of CmoCh01G007200 vs. NCBI nr
Match: KAG6607333.1 (Rab3 GTPase-activating protein catalytic subunit, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407.1 bits (1045), Expect = 1.0e-109
Identity = 201/213 (94.37%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 216 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 275

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG
Sbjct: 276 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 335

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 336 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 395

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 396 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 427

[Close]

BLAST of CmoCh01G007200 vs. NCBI nr
Match: XP_023522723.1 (rab3 GTPase-activating protein catalytic subunit isoform X1 [Cucurbita pepo subsp. pepo] >XP_023522729.1 rab3 GTPase-activating protein catalytic subunit isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.1 bits (1045), Expect = 1.0e-109
Identity = 201/213 (94.37%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 281 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 340

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG
Sbjct: 341 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 400

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 401 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 460

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 461 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 492

[Close]

BLAST of CmoCh01G007200 vs. NCBI nr
Match: KAG6607332.1 (Rab3 GTPase-activating protein catalytic subunit, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407.1 bits (1045), Expect = 1.0e-109
Identity = 201/213 (94.37%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 281 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 340

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG
Sbjct: 341 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 400

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 401 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 460

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 461 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 492

[Close]

BLAST of CmoCh01G007200 vs. NCBI nr
Match: XP_022949105.1 (rab3 GTPase-activating protein catalytic subunit isoform X2 [Cucurbita moschata])

HSP 1 Score: 407.1 bits (1045), Expect = 1.0e-109
Identity = 201/213 (94.37%), Postives = 205/213 (96.24%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL
Sbjct: 228 GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 287

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG
Sbjct: 288 LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 347

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP
Sbjct: 348 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 407

Query: 191 ISSSIDLSSCLINQKLQMTSPLAFGKGHSSEDE 224
           ISSSIDLSSCLINQKLQM + +   + H S +E
Sbjct: 408 ISSSIDLSSCLINQKLQMLA-ICIERKHQSIEE 439

[Close]

BLAST of CmoCh01G007200 vs. TAIR 10
Match: AT5G58510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 304.3 bits (778), Expect = 8.6e-83
Identity = 138/198 (69.70%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 11  GFELIASWSEKMVESSLEMAELENSSPHEAKKWILFPILSPNITDTTMGNRVGFSSQLYL 70
           GFEL+ +W+++ VES+LEMAELEN+SPH+A+KWIL PILSP + D + G R+ F+SQL  
Sbjct: 288 GFELVVTWADRTVESTLEMAELENASPHDAEKWILHPILSPYLGDPSHGKRIDFASQLLC 347

Query: 71  LIDALDMSFQAQFMEDFVSVENPGSDNFKSSTAVPPPTVIDRVLKELFHEGKKSPYFAKG 130
           L++ALD SF AQFMEDFVSVENP S+N K+S  +PPP+V+DRV+K+LF EG K P F KG
Sbjct: 348 LVEALDSSFSAQFMEDFVSVENPSSENLKTSVVIPPPSVLDRVIKDLFREGSKLPDFTKG 407

Query: 131 EHRTSQAIKAAALDSLFAQFCLHVLWFGNCNIRAIATLWVEFVREVRWCWDEVQPLPRMP 190
           EHR S+A+KAA L+SLF QFCLH LWFGNCNIRAIA LW+EFVREVRWCW+E QPLP+MP
Sbjct: 408 EHRLSRALKAAPLESLFTQFCLHSLWFGNCNIRAIAFLWIEFVREVRWCWEETQPLPKMP 467

Query: 191 ISSSIDLSSCLINQKLQM 209
           I  SIDLSSCLINQKL +
Sbjct: 468 IDGSIDLSSCLINQKLHL 485

The following BLAST results are available for this feature:

BLAST of CmoCh01G007200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q80UJ7	8.3e-06	32.35	Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus OX=10090 GN=Rab...	[more]
Q15042	1.1e-05	26.92	Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens OX=9606 GN=RAB3...	[more]
P69735	3.2e-05	31.43	Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicu...	[more]
Q6NUV0	9.2e-05	29.27	Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio OX=7955 GN=rab3g...	[more]
Q642R9	1.2e-04	34.78	Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis OX=8355 GN=ra...	[more]

BLAST of CmoCh01G007200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBV8	4.9e-110	94.37	Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1GBV2	4.9e-110	94.37	Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1K9B0	1.1e-109	93.90	Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1K6Y4	1.1e-109	93.90	Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7UVM5	4.3e-106	90.61	Rab3 GTPase-activating protein catalytic subunit OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of CmoCh01G007200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949104.1	1.0e-109	94.37	rab3 GTPase-activating protein catalytic subunit isoform X1 [Cucurbita moschata]	[more]
KAG6607333.1	1.0e-109	94.37	Rab3 GTPase-activating protein catalytic subunit, partial [Cucurbita argyrosperm...	[more]
XP_023522723.1	1.0e-109	94.37	rab3 GTPase-activating protein catalytic subunit isoform X1 [Cucurbita pepo subs...	[more]
KAG6607332.1	1.0e-109	94.37	Rab3 GTPase-activating protein catalytic subunit, partial [Cucurbita argyrosperm...	[more]
XP_022949105.1	1.0e-109	94.37	rab3 GTPase-activating protein catalytic subunit isoform X2 [Cucurbita moschata]	[more]

BLAST of CmoCh01G007200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58510.1	8.6e-83	69.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..35
None	No IPR available	PANTHER	PTHR21422:SF13	BNAANNG16370D PROTEIN	coord: 10..208
IPR026147	Rab3 GTPase-activating protein catalytic subunit	PANTHER	PTHR21422	RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT	coord: 10..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G007200.1	CmoCh01G007200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043547	positive regulation of GTPase activity
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005096	GTPase activator activity