CmoCh01G007190 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGATGATTAAGATACCCATTTTCTTTCGTTTTCTGAAATCTGAACTTTGAAAGTTCGTCGTGTGAAGAAGAACAGGGAGATTATCTGAAAATTATCTCATTTCAGCTGAAGCATACCAGTTGTTCCTGATTCTCTTTTCTCTCCTCGCAATTCTCGAATCATTTTCGTTTGTTTTTTCGTATTGTAACTTAACAAGAGAAATCTCTCTGACTTCTGCATTCCGCTGATCCAATTTGCATGATTTGAGCCGCGATTTACTCCATCAGATCTCTAATGGCGTCCTCCAGCAAGGCTGAATCTAATGGAGGAGATGAAGCCATGGAAGACGAGGAGGTGTGTTTTTCTACTTTTCTCCTGTTAACTCTTATTGATCATTCAACATCGTAAATTGCCTTCTTATGCTCCTCCTTGTTTTGGACCATAATAGCTTACGATAATGGCAATTTGCTTTGGCATTTCGATTCATTTTTCTTTTGAGGCACTCTGGAGGTTTATTGGTCTTTAGGAATGTACTGATCTCAATTTTAGCCGACCGGAGTATAGGAACTGAGTATTTTCTTCATTTGTGTGGCATTTGTTCAGGTTGAGCACTTCGATGATTTTACTATTGCGTCAACATGGGAAAGGTAGCTTCTCTAACCTCTTGATGAATCGAGATTACAGGAGTACTGTCTCTCGTCATTACTATGTATCTCTTTAGATTTTAAGTCCGATTGCAATTAAATTGAACACTAAACTCGCCGAGACTTTTCTCTATTTGGTGATGGAAAATGTACAAGTAGAAGCTCTCTGTACTAAACCTCTTTCAACTTGTAGAGTAAACTCTCCTTGAACTGAAGAGAAAGTTCTTCTATTAGGAGAGACTCGTTTCAATAGAGGACAATTTCTCAGTGGGCTAAAAAACAAGATAAAAGTAGAGGATATCATGATTTATTTTACCTCACTTTGTAAGTTGTATCAGGTGGAACTTGTTCTAATTGTCATGTTTATTTTCTCTTAAGATTCATTTCTGAAATAGAGGCAGTTTGTCGACAATGGATGTCTGATGGTCCAAATAATTTGTTGGTAAGTAATTTTTCTCTGAAGGCCATGCTCTTCCATCTTCTATGTTTCTGAAACTATTATACAAGATTACATTTCAATTATCCTGCAAATAGGTTATTTTGATATTGGGGGGAGATAATTTTCTTTGAATGTTCTCAATACCTCAAAAGCTTCACTTTTTGTTTTCCTTGCCTCCTAGAATAGGTGTATTATTATTAGCTTCATTATTTTGTATTTTTCTTTCATTCATTTATTTTCTAAAATTCTTCGCGGCATCTTCAGATGGAATTTGTTCGAAAAATTATTATTACCATTATTCAATAGAAAATAAAATGATGTCTGTATGATTATCTAGTTGGAAGGTTATCTTTTCTTTTCTCTTTTTTTGCCCGCCCATCATTGTTGCTGTTCATTGGGATGATTTATCCAATCCAATAGAGTATTTAAAGAGTCTTAGTGAAATATCTATCTACCACATTGCATATGATTTGCTATTCTTAAGAGCACGTCTGGCATTTTAGTATTCTTGGGTGGCCGCATGCAATTTTCTGCCGCCTATTTTCTTAATCACTTATCATTTTATTAATATATTTTTTATTTTTTAATAATTTCATGCTATTTTTATTACTTGTCTGCAGAAAAAGGATGCAACTCCGTTAGAAATCTCAACTAACCTATATAAGGTTAAATCTGATCTTAAGTGTGATAATAAAAACTATTCGATGGAGTATTACTTTGGAAATAGCAATCATGGTACTAGAGAATTCTCCCATAAAATTTATTAGTTTAGTTTCATGTGTTGACGAGCCACCATTATGCACTTACTTCTACTCGACAGGCAAAGTTGTGGACTGGGAATTAAGCTTGCATGAATTACAGTTATGCTTTGGGGTACAAGAGTTTTTGGTACGTTAGTACCCATGTTTTGCAGTTTGTATGAAATATTAATAAATTCACATATTTTATAGATATTTTCTATATATACCACCAGGTGATTGCTCCTCAAAGTATTAGTGGCGTAATTCTCGATTCACCTGAGGCCAGCAAGCTTTTAAGTGCAGTTGCCATTGCTTTGACAAACTGTTCCAGGTGGAGCTCTGATGTTGAAATTTCTTATATGGAACTCTTGATGAAGTGTTTTTTTTTAATGATCCATTAGATTAATAAACTCAAAAAGATTACAATCTTGTGGTAATTCATGGCCGCTGTTTGTTTGTTTCTTTTTTTTTTCCTGCTCTTTACCTGAACCTTTGACATTTTGATATTGGATAACATGCAAGATTTCTATAAAGTGTCTTGGACAATATCTATTTCTATGTGTGAATGCAGCTTTTGGCCAGCTTTTGTTCCAGTGCATGATCCATCGCGAAAAGCATATATTGGTATCCAAAATATGGGAACAACTTTTACTAGGAGATTTGAAGCAGATCGCATTGGTACCCAAGTGCCAATAAAACTTATGCATTTGGAAGGACTATATGAGTTGTTTGTTTCAAAGTTTGTAAGTTCTATGGATGCTTGTATTTCTTGCTAGTTTTTCTCAGACCATCACCTTAATTCTTGAACTTCACATTGTCACTATTGCACCTTCTCTTTTTCTTAGCATACCTGTTCATTTTTCCTTTACAACTAAGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAAAAAAATTAGACTCTGATTTAACTTCACAAGAACACATAGGAGAGATATTTAAGGTCTGAAATATATTTTGGGCCTAGCGAACCAAATATTGTTTTATAGCTATGTCACAAGTAGGTATTTACAATTTATGAATTTTCCCCATCTTATATATTTCTCCATTAAAGTAAAAAAAGAATCTTGATGTGGGGTGAACTTATCTAATTTCCATGTAACCTCCTATTATTCGTTATATTCACATGTTTGATCTTTACAAATATCTTTCTTTTTTCTTTTCATACTTTTCTTTTGCCTGCTGCATATTAGAAGCTAGAGTTCTTAATGTAATTCTTAGTTTTCCCAAAACTATATAATTTTTCTCTTTTTGAAGGCCTACTCCTCCATGGACATTTCGATGAATCTCTTCAAAGTCCATTTTACCATGAAGCTGACCTTCAAAATTCTCTTATCTGATGATGACGACATCCGCAGAGATGATGCTGAGATGACAGAATCAGTATACGAAAGTGCCGTTGGTACTAGTGGAAAAGGGCAATGGGATGATGACTGCCCATGGAGTGAGTGGTATTCCTCGGAAGATCCTGTGAAAGGTGAAAATATTTAAGATATTATCTCTCATTCTCTCTTTGGCCATTTGAGGTTTGTGTATATATGATCATGTGATTAGGTTACCTCTGATATGCTGACATATTACTTCCTAAACAGCGATCAGAGTTTAAAATACCAGATATAATGGATTTGGCACCCATTATTTTGTTCAATTTATTTGAAGTTTTATGAGCTTACATGTTCAAATATTCCAAGTTGATAAATCTCCCTTCATTTAGGCAGAAGTAAAGGGAAACGAGAGAATTATATTATATAG TGATGATTAAGATACCCATTTTCTTTCGTTTTCTGAAATCTGAACTTTGAAAGTTCGTCGTGTGAAGAAGAACAGGGAGATTATCTGAAAATTATCTCATTTCAGCTGAAGCATACCAGTTGTTCCTGATTCTCTTTTCTCTCCTCGCAATTCTCGAATCATTTTCGTTTGTTTTTTCGTATTGTAACTTAACAAGAGAAATCTCTCTGACTTCTGCATTCCGCTGATCCAATTTGCATGATTTGAGCCGCGATTTACTCCATCAGATCTCTAATGGCGTCCTCCAGCAAGGCTGAATCTAATGGAGGAGATGAAGCCATGGAAGACGAGGAGGTTGAGCACTTCGATGATTTTACTATTGCGTCAACATGGGAAAGATTCATTTCTGAAATAGAGGCAGTTTGTCGACAATGGATGTCTGATGGTCCAAATAATTTGTTGAAAAAGGATGCAACTCCGTTAGAAATCTCAACTAACCTATATAAGGTTAAATCTGATCTTAAGTGTGATAATAAAAACTATTCGATGGAGTATTACTTTGGAAATAGCAATCATGGCAAAGTTGTGGACTGGGAATTAAGCTTGCATGAATTACAGTTATGCTTTGGGGTACAAGAGTTTTTGGTGATTGCTCCTCAAAGTATTAGTGGCGTAATTCTCGATTCACCTGAGGCCAGCAAGCTTTTAAGTGCAGTTGCCATTGCTTTGACAAACTGTTCCAGCTTTTGGCCAGCTTTTGTTCCAGTGCATGATCCATCGCGAAAAGCATATATTGGTATCCAAAATATGGGAACAACTTTTACTAGGAGATTTGAAGCAGATCGCATTGGTACCCAAGTGCCAATAAAACTTATGCATTTGGAAGGACTATATGAGTTGTTTGTTTCAAAGTTTGCCTACTCCTCCATGGACATTTCGATGAATCTCTTCAAAGTCCATTTTACCATGAAGCTGACCTTCAAAATTCTCTTATCTGATGATGACGACATCCGCAGAGATGATGCTGAGATGACAGAATCAGTATACGAAAGTGCCGTTGGTACTAGTGGAAAAGGGCAATGGGATGATGACTGCCCATGGAGTGAGTGGTATTCCTCGGAAGATCCTGTGAAAGGCAGAAGTAAAGGGAAACGAGAGAATTATATTATATAG ATGGCGTCCTCCAGCAAGGCTGAATCTAATGGAGGAGATGAAGCCATGGAAGACGAGGAGGTTGAGCACTTCGATGATTTTACTATTGCGTCAACATGGGAAAGATTCATTTCTGAAATAGAGGCAGTTTGTCGACAATGGATGTCTGATGGTCCAAATAATTTGTTGAAAAAGGATGCAACTCCGTTAGAAATCTCAACTAACCTATATAAGGTTAAATCTGATCTTAAGTGTGATAATAAAAACTATTCGATGGAGTATTACTTTGGAAATAGCAATCATGGCAAAGTTGTGGACTGGGAATTAAGCTTGCATGAATTACAGTTATGCTTTGGGGTACAAGAGTTTTTGGTGATTGCTCCTCAAAGTATTAGTGGCGTAATTCTCGATTCACCTGAGGCCAGCAAGCTTTTAAGTGCAGTTGCCATTGCTTTGACAAACTGTTCCAGCTTTTGGCCAGCTTTTGTTCCAGTGCATGATCCATCGCGAAAAGCATATATTGGTATCCAAAATATGGGAACAACTTTTACTAGGAGATTTGAAGCAGATCGCATTGGTACCCAAGTGCCAATAAAACTTATGCATTTGGAAGGACTATATGAGTTGTTTGTTTCAAAGTTTGCCTACTCCTCCATGGACATTTCGATGAATCTCTTCAAAGTCCATTTTACCATGAAGCTGACCTTCAAAATTCTCTTATCTGATGATGACGACATCCGCAGAGATGATGCTGAGATGACAGAATCAGTATACGAAAGTGCCGTTGGTACTAGTGGAAAAGGGCAATGGGATGATGACTGCCCATGGAGTGAGTGGTATTCCTCGGAAGATCCTGTGAAAGGCAGAAGTAAAGGGAAACGAGAGAATTATATTATATAG MASSSKAESNGGDEAMEDEEVEHFDDFTIASTWERFISEIEAVCRQWMSDGPNNLLKKDATPLEISTNLYKVKSDLKCDNKNYSMEYYFGNSNHGKVVDWELSLHELQLCFGVQEFLVIAPQSISGVILDSPEASKLLSAVAIALTNCSSFWPAFVPVHDPSRKAYIGIQNMGTTFTRRFEADRIGTQVPIKLMHLEGLYELFVSKFAYSSMDISMNLFKVHFTMKLTFKILLSDDDDIRRDDAEMTESVYESAVGTSGKGQWDDDCPWSEWYSSEDPVKGRSKGKRENYII Homology
BLAST of CmoCh01G007190 vs. ExPASy Swiss-Prot
Match: Q80UJ7 (Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus OX=10090 GN=Rab3gap1 PE=1 SV=4) HSP 1 Score: 82.0 bits (201), Expect = 1.2e-14 Identity = 67/210 (31.90%), Postives = 100/210 (47.62%), Query Frame = 0
BLAST of CmoCh01G007190 vs. ExPASy Swiss-Prot
Match: Q15042 (Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens OX=9606 GN=RAB3GAP1 PE=1 SV=3) HSP 1 Score: 81.3 bits (199), Expect = 2.1e-14 Identity = 70/233 (30.04%), Postives = 106/233 (45.49%), Query Frame = 0
BLAST of CmoCh01G007190 vs. ExPASy Swiss-Prot
Match: Q642R9 (Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis OX=8355 GN=rab3gap1 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12 Identity = 63/212 (29.72%), Postives = 98/212 (46.23%), Query Frame = 0
BLAST of CmoCh01G007190 vs. ExPASy Swiss-Prot
Match: Q6NUV0 (Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio OX=7955 GN=rab3gap1 PE=2 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 2.8e-11 Identity = 67/231 (29.00%), Postives = 100/231 (43.29%), Query Frame = 0
BLAST of CmoCh01G007190 vs. ExPASy TrEMBL
Match: A0A6J1GBV8 (Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111452560 PE=3 SV=1) HSP 1 Score: 571.6 bits (1472), Expect = 1.8e-159 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
BLAST of CmoCh01G007190 vs. ExPASy TrEMBL
Match: A0A6J1K9B0 (Rab3 GTPase-activating protein catalytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111492852 PE=3 SV=1) HSP 1 Score: 565.8 bits (1457), Expect = 1.0e-157 Identity = 278/281 (98.93%), Postives = 280/281 (99.64%), Query Frame = 0
BLAST of CmoCh01G007190 vs. ExPASy TrEMBL
Match: A0A5A7UVM5 (Rab3 GTPase-activating protein catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00740 PE=3 SV=1) HSP 1 Score: 525.8 bits (1353), Expect = 1.2e-145 Identity = 255/281 (90.75%), Postives = 268/281 (95.37%), Query Frame = 0
BLAST of CmoCh01G007190 vs. ExPASy TrEMBL
Match: A0A6J1D9P3 (Rab3 GTPase-activating protein catalytic subunit OS=Momordica charantia OX=3673 GN=LOC111018925 PE=3 SV=1) HSP 1 Score: 525.8 bits (1353), Expect = 1.2e-145 Identity = 258/281 (91.81%), Postives = 270/281 (96.09%), Query Frame = 0
BLAST of CmoCh01G007190 vs. ExPASy TrEMBL
Match: A0A1S3C6J8 (Rab3 GTPase-activating protein catalytic subunit OS=Cucumis melo OX=3656 GN=LOC103497052 PE=3 SV=1) HSP 1 Score: 525.8 bits (1353), Expect = 1.2e-145 Identity = 255/281 (90.75%), Postives = 268/281 (95.37%), Query Frame = 0
BLAST of CmoCh01G007190 vs. NCBI nr
Match: XP_022949104.1 (rab3 GTPase-activating protein catalytic subunit isoform X1 [Cucurbita moschata]) HSP 1 Score: 571.6 bits (1472), Expect = 3.8e-159 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
BLAST of CmoCh01G007190 vs. NCBI nr
Match: KAG7037009.1 (Rab3 GTPase-activating protein catalytic subunit [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 567.4 bits (1461), Expect = 7.2e-158 Identity = 279/283 (98.59%), Postives = 281/283 (99.29%), Query Frame = 0
BLAST of CmoCh01G007190 vs. NCBI nr
Match: XP_022998101.1 (rab3 GTPase-activating protein catalytic subunit isoform X1 [Cucurbita maxima]) HSP 1 Score: 565.8 bits (1457), Expect = 2.1e-157 Identity = 278/281 (98.93%), Postives = 280/281 (99.64%), Query Frame = 0
BLAST of CmoCh01G007190 vs. NCBI nr
Match: XP_023522723.1 (rab3 GTPase-activating protein catalytic subunit isoform X1 [Cucurbita pepo subsp. pepo] >XP_023522729.1 rab3 GTPase-activating protein catalytic subunit isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 564.3 bits (1453), Expect = 6.1e-157 Identity = 278/281 (98.93%), Postives = 278/281 (98.93%), Query Frame = 0
BLAST of CmoCh01G007190 vs. NCBI nr
Match: KAG6607332.1 (Rab3 GTPase-activating protein catalytic subunit, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 563.9 bits (1452), Expect = 8.0e-157 Identity = 278/281 (98.93%), Postives = 279/281 (99.29%), Query Frame = 0
BLAST of CmoCh01G007190 vs. TAIR 10
Match: AT5G58510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 356.7 bits (914), Expect = 1.8e-98 Identity = 177/289 (61.25%), Postives = 224/289 (77.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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