CmoCh01G007090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G007090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 3639578 .. 3642881 (-)
RNA-Seq Expression	CmoCh01G007090
Synteny	CmoCh01G007090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGCGAAAATTGGGAATGTTGCCCATTGTCCTTACCACTAATTTCTTATGGAAGAACAGTGGAGAAATCCCTTTGAATGATTGCTGAAACAGCGAAGACGAACCGATAAGCTTTGAAATTCTCTGATTCTGATCAGAAGAAAGCGATTCGAATAAGGACAATTTGAAACGATGAGTACCCATATCAATTCAATCGAAGTCGCCATAGAAGAGGAAGAAGCAGATGTGAGTCTTTTTCTTTCATTACGCTTCCATGGCCGACGGATAAGAAAGGCAACGCCATTTCTTTCACTATCATTGTCCACCGTACAACAAGATTGACTGCAACAAGCTTTCAATCTGATTGGCAAAGCATTTAATCCAATTGGGTCACTCTCAAATCCGTAACAGATCTCTGAAATTTGTGATGCCGATGGTATACCTAACTCATAATCCTTCTCTGTCGTTACTTTCAAATCTGAGTCTGCGATGCAGTTTACTTTGGGAATTGAAGACGTGGTACGGTGGGAGAAATGGAACAATCAAAGATATGGTTGTTAGAAGGTATGACGATTTCTCATAGTTTTTTAAGCTCATTCAATTCGCTGGTTCTGTTTCTGCCCATAAACTGTTTGTGAAAATGCCTGACTGAATAGAATCAAATAGTTTGGCTAAGAGAGTGTTAGAGAGCTGGACATGGCCCATAACCTGTTTGTGAAAATGCCCACTTGAGAAAAAAACATCTCTCAATCGACTAGATTAAGCCTCTGATTCTGTTTCTGCCCATAACCTGTTTGTGAAAATGCCTGACTGACTAGAATCAAATAGTTTGGCAAAGAGAGTGTTAGAGAGCTAGATATGGTGGTTGAGATTGATAATTGAAGTAAAAACATCCCTCAATCGTCTAGATTAAGCCTCTGGTCCTTTAAACATCTTGAGCTCTTAATCCAGACCTGTAGTTCATCTCTTCTTTCATGTTTTTTCAGTTCTTCTGATTTCACTTTCTGTTTAATCTCCTGCCATTGGAATGTTCTGCAACTATCAAATCATATAAATGGCATCCAATTCTCCCTCTCCATAGATTTGCAGTTGCAAGCTGGTGGTGTTGAGAATTGAGAATTGAGAATTGGATTCGCCTCCACCTCATTGGGGGGTGGCTTGGTTTGATCTATTCCAGATTGTGTTGGCTTATTTCTATGTATGTAAATGGTTCTTTGAGATAAGATTGTTCATAACTTTGATTCATTCTCCTAAATAATTGAGATCTCTGAAGCCTTGTTTGGCTTGTTAAGGTCATTATCATCTGGTATGAACTTCTGAAGAATGGTGGAAGCTTCATGTTCTTTCATAAAAATGGAAAATGGATGTGATATATGAAGCTTCAGCAATTATGAGTGAAGCTGAAGAACAGGTATGGAGCTTCCTTCAGCAGCCATTCACTTTCTTTTACTTAGTACTCCAAATATTAAAAGATCATATAGATAAGGGGAAATTTTAGTCACTATATTCTTATCCTTACTGATTTATTTGCATTATTATTTTCCATATTCTTTATCTTCATATCATATTATTTGGGGCTTTGATGTGACATTTTATTATTTTCATTTCGTCCTATCATTTTAATAGCCGCTCAATTATTGTGTATGGTTATAACAATTTTTTTTTTTTTCAAAAACAACATCATAGTTTAGTCCTATTCTATTTTTGGTATTTACCCTTTTGCATGAAAAAATTATTTTGGTCGTTTCATTGAAACATAATATCTATTTGTCTAGTATGTGTAATAGCTCAAACTCACCGCTAGTAGATATTTGTCCATTTTGGCCCATTACGTATCGTCGTTAGCCTCACAGTTTTAATACGCGTCTACTAGGTAGAAGTTTTCACACCCTTTAAGGAATGTTTTGTCCCTCTCTCCAACCGATGTGAGATCATACAATTCACCTCCCTTAGGCACTTAGCATCCTTGCTGGCACACCGCATGGTGTCTGGCTATGATACCATTTGTAATAGTCTAAGTCTATCGCTAGCATATATTGTCCGTTTTGGCCTACGTGTCATCGTCAGCCTTGTAGCTTTAAAATGTGTCTACTAGAGAGAGGTTTTCATACCCGTAAGGAATGTTTTCTTCCTCTCTCCCACCTATGTGAGATCTTAAAATACATTTACCTAATGAATATGATAATTGTAGATAATAGTTGCTTGTAGTATGGTTAGGCGTTAGAAATGGTAATGAACTTGAGTTATTACTAAGTGAAGAATGGAAAAGTATTAAAAATTTGATGGTAAGGCAGATTAAAATAAGATGAGTTTAGATAGTTTGATTATTAGGTGTAAATGAGAGTGCATTTATTATGGATGGGTCAATTGAAAAAGTAGTTGATGGGTAGTTCTTCCATGAATTTCACATTATTAGGGTTCATATGGCTCACCTAATTTAATTGAATTTATTTAAATTTTATTCTTAAGTTTGGATTTATTTATTTTTTAATAGTTTACTTATATTTATCTATTTTTAGTTTTTAATAATCATTAATTGATTATAAATTTTAATATACTATAATATAATATCTTTACTTTTTTTTCTACCATGAATAAGATTAGATGTATATTATATATCTATACACGGTCTAGGTAGAGTTAGATACTAGTATTTCTCTATACACGATTTGAGTAAGGTTGTGCTTATGCATAGTATTTCTCTATACACAGTCTGTATAAGGTTGTGCTTGTGCATAGTATTTGTATTTCTCTATACACAGTCTGTGTAAGGTTGTGCTTGTGCATAATATCTACACACATGCACGTGAAACCAATAATGGGCTGGAAACTTGAAGGATTGGGCTGGACTGAGGCTAAAGATCTGGTCTTGTTTCAGGTGGGTGGTTGTTGGATGCGCACTCGTGGGCTCGAGGCTGCTAGAGTTCGTGGGCTGGGTCGAGGTTGGTCGGCTAATGGGTTGTGGTGTTTGCTGAAGGTTGGGTCTAGAGTTTGAAGACCTGATCCAACCCGTCCTCTGCAACTTCTTCCTTACCCGAGTTTTTGCAGACGATCTTCCACATACAAAGACATGTTTCCACATCACATATATGCCAGAACTTTCATTTATAGAAATAAAATTAGAGAAATACAGACTAAATAAACAAAGAGCAGACAATAAACCTAACTCCAAACCATAAAAGAGATGTTTAGTTTCAAAATGGATACATAATTACTTCAAAATAACTAATATAGGGAAGGGATCAACTACAATGGGAAGTGAGCAAAAACAGAAACAGAAACAGAAACACACTGCACAACAAAAACACCTAAAAACCTTCAAATAA

mRNA sequence

TCGCGAAAATTGGGAATGTTGCCCATTGTCCTTACCACTAATTTCTTATGGAAGAACAGTGGAGAAATCCCTTTGAATGATTGCTGAAACAGCGAAGACGAACCGATAAGCTTTGAAATTCTCTGATTCTGATCAGAAGAAAGCGATTCGAATAAGGACAATTTGAAACGATGAGTACCCATATCAATTCAATCGAAGTCGCCATAGAAGAGGAAGAAGCAGATGTGAGTCTTTTTCTTTCATTACGCTTCCATGGCCGACGGATAAGAAAGGCAACGCCATTTCTTTCACTATCATTGTCCACCGTACAACAAGATTGACTGCAACAAGCTTTCAATCTGATTGGCAAAGCATTTAATCCAATTGGGTCACTCTCAAATCCGTAACAGATCTCTGAAATTTGTGATGCCGATGGTATACCTAACTCATAATCCTTCTCTGTCGTTACTTTCAAATCTGAGTCTGCGATGCAGTTTACTTTGGGAATTGAAGACGTGGTACGGTGGGAGAAATGGAACAATCAAAGATATGGTTGTTAGAAGGTCATTATCATCTGCTTCAGCAATTATGAGTGAAGCTGAAGAACAGGTGGGTGGTTGTTGGATGCGCACTCGTGGGCTCGAGGCTGCTAGAGTTCGTGGGCTGGGTCGAGGGAAGGGATCAACTACAATGGGAAGTGAGCAAAAACAGAAACAGAAACAGAAACACACTGCACAACAAAAACACCTAAAAACCTTCAAATAA

Coding sequence (CDS)

ATGCCGATGGTATACCTAACTCATAATCCTTCTCTGTCGTTACTTTCAAATCTGAGTCTGCGATGCAGTTTACTTTGGGAATTGAAGACGTGGTACGGTGGGAGAAATGGAACAATCAAAGATATGGTTGTTAGAAGGTCATTATCATCTGCTTCAGCAATTATGAGTGAAGCTGAAGAACAGGTGGGTGGTTGTTGGATGCGCACTCGTGGGCTCGAGGCTGCTAGAGTTCGTGGGCTGGGTCGAGGGAAGGGATCAACTACAATGGGAAGTGAGCAAAAACAGAAACAGAAACAGAAACACACTGCACAACAAAAACACCTAAAAACCTTCAAATAA

Protein sequence

MPMVYLTHNPSLSLLSNLSLRCSLLWELKTWYGGRNGTIKDMVVRRSLSSASAIMSEAEEQVGGCWMRTRGLEAARVRGLGRGKGSTTMGSEQKQKQKQKHTAQQKHLKTFK

Homology

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BLAST of CmoCh01G007090 vs. NCBI nr
Match: KAG6607322.1 (hypothetical protein SDJN03_00664, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 3  MVYLTHNPSLSLLSNLSLRCSLLWELKTWYGGRNGTIKDMVVRRSLSSASAIMSEAEEQV 62
          MVYLTHNPSLSLLSNLSLRCSLLWELKTWYGGRNGTIKDMVVRRSLSSASAIMSEA+EQV
Sbjct: 1  MVYLTHNPSLSLLSNLSLRCSLLWELKTWYGGRNGTIKDMVVRRSLSSASAIMSEAQEQV 60

Query: 63 GGCWMRTRGLEAARVRGLGRG 84
          GGCWMRTRGLEAARVRGLGRG
Sbjct: 61 GGCWMRTRGLEAARVRGLGRG 81

The following BLAST results are available for this feature:

BLAST of CmoCh01G007090 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G007090 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G007090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607322.1	2.7e-36	98.77	hypothetical protein SDJN03_00664, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh01G007090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G007090.1	CmoCh01G007090.1	mRNA