CmoCh01G006780 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G006780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	serine/arginine-rich splicing factor SR45a-like isoform X1
Location	Cmo_Chr01: 3435496 .. 3439466 (-)
RNA-Seq Expression	CmoCh01G006780
Synteny	CmoCh01G006780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGCGCGGGGCCTCTTTGTTGTTATATCGTTCCTATGCTGTCATGTCTTCATTATGTAATATGACACTCTTTTTACTTGAGAATGAGCAATTTGGATTCACTGCTTCCATTCCTTTGTCTGTTTTGAGGCAAAAAGCCCTTTGTTGTTAGTTTAGTCTAAACGAAATAGAAGTGAAATTCGGGTGTTACAAACAGCCCAGAAGTTCACTATTTTGATTAATTATATCAGTAAGATCTTATCAACAATTTCTTTCATTACTACGTTATCATTTGAAATTTATATATATTTCAAAATAGGGATTTGTGTTAATTTTTTTTACAAGTTCTATGCATTAATATAGAGCCAACTTTTTTCTTTTTGTAACGCGTAGCTGATGTTCGTACTTTTGGTGATGTTCGTACTTTTAGCCTTTAAAACTAAGGACGAACTTAGCTAATATCTGAATAGTAAGATGACAGACAAATTTCAGGCTACCAAATTAATATTTATCATAGTATACTATTTACTGACCAAATAAACGTCTACACGTCTGCATCAAATTTCTATAGTTGTAATTATGTTTTATTGTGATTTGGTATCAAAAGCTCTAGAAACTTCTATAACCCCGGAGTTATTTATATCACGAGACTTTTGAGCTCAAACCCATGCAATTTTAAGTTTCATGAAAGTATAATACTCTTCATTTTTATAAATATTATTTAATGCACGTAAATGGGAGGCCTTTTTTTTTTTTTTTTTTTTATAAAAGATGTGACAATTTTGATAATATGAGATTTATAATTTTTTTTGGTATTGCACAGGTCATATTCTGACACGTAGCGGATCCACGATAACATTTTGATTGCGAAATACCTGATTAGTACTCCACGATTTGAAATGCCAATCTGAATACGGAAACGAAAAAGTTTAAATTATGTTTTATTGCGATTTGGCATCCGGTGCTCCAGAAACTTCTCTCACCTGGAGGCTATATATTATGCTTTCAGCTTGTTGCGTAAAACTTTATTGCATGCGCTTTCGTGCGAGATATTACTGTCGTTGAATACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCTGCAGTTTGGGCGGTAAATTCTTTCTCTATCTCTCATTTCATGAACTCTTGCATTTATTTTCGTTGATTGAGATGATACGTTTGATTCTTGATTTCGACGATGTTTATGGAGAGAATTAGGGTAGGGTTATTGCTAGATTGTTTTTCGTGTGATTAGCATATTCATTTTCGAGTATTTTCTGCAGTTTTCTTGGAATTTTTTTGTTAACTTAGAATATTGGTGGAGAGATACTGTATTTCTTTCTATTGGAAGTCATGGATATTGTATTTCTTCATTTTCTTGTTCTTCACGAGTGTTAAACTGACGTTCCGATTTACCAGCTGCTCTATTCGAGAAACAAAATCATTGTAATTCCGTTGTACTCTTCTTTAGTAAATGCTGATCGTGTTTAGGCTTGTCTTGGCTGATCAGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGTATTTCTTGCTCAGGAACCCTTTGCTTGGTCGGTTTTTCCCATATTCTCTAGATCATCTGTATGATACATTTACTTCTATTTTGTGGATTTTTTTTTTCAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGCACAGTATGTCGCAGATCTTATTTTCTTCAAATTTTTTCTTTGGCTTGTACTTTTGATGGTGGTGTATGTGTTTTGTTCTTACTGTTGGTGATTGAATTTATGGACGATTTTCTCTATTCGTGAATGAATTTTTCATTCTCCAGGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGGTAAAAAATTAAACCAAGTACAATTTCATAGTCTCGAGATGTTTCTCATTATTAATGTTGTCTAAATTGTTCAACTTCAAATATTTACGGGATCTCTGGATGGTTTGTTGCAAGAGATTTGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAATCAAACAAAACAAACACATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTTTTATCTGCTAATTGATTCCTGTAGCCCTACTTTCCTCTCTACTGTGGCATGTTCCCCTGCTCTGCTGTTTTTCTTCAATTGACAATTGAATTGTCTCATTTTACATCTCTTATTTTCTGATAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATATTTTGGACTTAGAACAGTCTGTGGTGAGCTTTTAATCTAATGTTTGATTTATTTCTATGAAGTATTGCGCTATTTTTTTTTTTCTTTTGTCTAATCCTATGTTTATAACAGTGAGACGTAGATTGCGCAGCTACTCTTCTCGACGTTCTCCCAGCTACTCTCCTTATAGCAGGAGCTTGAGCTGTTCGTCTAATTATTCATCTGACCGTAGCAGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCATACTCACCTTACGACTATTGCTCCCCTGATCTATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGGTATTCCTGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTCACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTAATTGGATGATGTAAAATTTGGTGCCTGGCCATTGGCTTGCGGACAGTTATCGCTTTGCTCTGTTCATACCATTCGGTTTGGTACATTCCTTTCTTTATTTTACTTTACCTTTTTTGATTTTACAAAATTCCAATTCGAGTTTTGTTATTACTTGCTCTCCGTGCTCTTCAACATGACTGGTTAATCTTAAACACCAGATGAGCAAGAATTTGTTCTACTCCGCCGAACTAGTTTCTTCAAAATTTACCCTCTTCCCCGTAGAAAATAGGATGTAGAAAAGCGCAGCCATGAAATACAGAACAGAGGTTAGCAACAGAAATCCTTGGAAAGAGCCCACAAGTTCCACGAAGAAACCAGCCCCAACTGTTCCCACAATAGCAGCAAGTGTCCCAGCCGTGTTAGACATACCTGAAACAGAATTTGGGTTCAATTTTGGTGTGAGTACTCATCCAGTAATATGCAAGAACCAAGCACTTGTCAAGAACTGAAGTTGGCTCAAAT

mRNA sequence

ATGGGGAGGCGCGGGGCCTCTTTGTTGTTATATCGTTCCTATGCTGTCATGTCTTCATTATGTAATATGACACTCTTTTTACTTGAGAATGAGCAATTTGGATTCACTGCTTCCATTCCTTTCTTGTTGCGTAAAACTTTATTGCATGCGCTTTCGTGCGAGATATTACTGTCGTTGAATACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCTGCAGTTTGGGCGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGCACAGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAATCAAACAAAACAAACACATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTTTTATCTGCTAATTGATTCCTGTAGCCCTACTTTCCTCTCTACTGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATATTTTGGACTTAGAACAGTCTGTGTGAGACGTAGATTGCGCAGCTACTCTTCTCGACGTTCTCCCAGCTACTCTCCTTATAGCAGGAGCTTGAGCTGTTCGTCTAATTATTCATCTGACCGTAGCAGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCATACTCACCTTACGACTATTGCTCCCCTGATCTATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGGTATTCCTGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTCACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAATTCACTCACTATTTTCTAATTGGATGATGTAAAATTTGGTGCCTGGCCATTGGCTTGCGGACAGTTATCGCTTTGCTCTGTTCATACCATTCGGTTTGGTACATTCCTTTCTTTATTTTACTTTACCTTTTTTGATTTTACAAAATTCCAATTCGAGTTTTGTTATTACTTGCTCTCCGTGCTCTTCAACATGACTGGTTAATCTTAAACACCAGATGAGCAAGAATTTGTTCTACTCCGCCGAACTAGTTTCTTCAAAATTTACCCTCTTCCCCGTAGAAAATAGGATGTAGAAAAGCGCAGCCATGAAATACAGAACAGAGGTTAGCAACAGAAATCCTTGGAAAGAGCCCACAAGTTCCACGAAGAAACCAGCCCCAACTGTTCCCACAATAGCAGCAAGTGTCCCAGCCGTGTTAGACATACCTGAAACAGAATTTGGGTTCAATTTTGGTGTGAGTACTCATCCAGTAATATGCAAGAACCAAGCACTTGTCAAGAACTGAAGTTGGCTCAAAT

Coding sequence (CDS)

ATGGGGAGGCGCGGGGCCTCTTTGTTGTTATATCGTTCCTATGCTGTCATGTCTTCATTATGTAATATGACACTCTTTTTACTTGAGAATGAGCAATTTGGATTCACTGCTTCCATTCCTTTCTTGTTGCGTAAAACTTTATTGCATGCGCTTTCGTGCGAGATATTACTGTCGTTGAATACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCTGCAGTTTGGGCGGTCGCAGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGCACAGTGCTAGATGTTCATCTCGTGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCACCGTGGAGAAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAATCAAACAAAACAAACACATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTTTTATCTGCTAATTGATTCCTGTAGCCCTACTTTCCTCTCTACTGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATATTTTGGACTTAGAACAGTCTGTGTGAGACGTAGATTGCGCAGCTACTCTTCTCGACGTTCTCCCAGCTACTCTCCTTATAGCAGGAGCTTGAGCTGTTCGTCTAATTATTCATCTGACCGTAGCAGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCATACTCACCTTACGACTATTGCTCCCCTGATCTATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGGTATTCCTGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTCACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGA

Protein sequence

MGRRGASLLLYRSYAVMSSLCNMTLFLLENEQFGFTASIPFLLRKTLLHALSCEILLSLNTRLHFLSILVLLLQFGRSQMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCVAALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGYSGGSGSVASRSVSPA

Homology

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BLAST of CmoCh01G006780 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.1e-55
Identity = 204/418 (48.80%), Postives = 227/418 (54.31%), Query Frame = 0


Query: 77  RSQMSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRIT 136
           RS MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T
Sbjct: 28  RSPMSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVT 87

Query: 137 RRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLIT 196
            R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+IT
Sbjct: 88  ERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVIT 147

Query: 197 VEKLCVAALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRT 256
           VEK                                                 ARRRRGRT
Sbjct: 148 VEK-------------------------------------------------ARRRRGRT 207

Query: 257 PTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRS 316
           PTPG+Y GLRT   R +  SYS RRS      S S S S +YSSDR RS S S  RR RS
Sbjct: 208 PTPGKYLGLRTARGRHKSPSYSPRRS-----VSCSRSRSRSYSSDRGRSYSPSYGRRGRS 267

Query: 317 NDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSP- 376
           +     YR    YS  R  SP  R +R   RS+SP  R   R R RSYSR+     RSP 
Sbjct: 268 SSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYR--RRDRSRSYSRNCRARDRSPY 327

Query: 377 TRRRDRSYSRSHSPCSRLPTRR-------HDRSYSPY------DYCSPDLYYRRHRDRSV 436
             RR RS SRS+SP  R   R         DRSYSP+       Y     YYRRH  RSV
Sbjct: 328 YMRRYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRDRSYSPESRYYRRH--RSV 382

Query: 437 SRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISP 478
           S SVSP  R  SR    S SPR  R  SRS SR      S+   RS R  S S S+SP
Sbjct: 388 SGSVSPGGRSMSR----SISPRKGRKESRSKSRRHDRQSSMCHSRSAR-SSTSRSVSP 382

[Close]

BLAST of CmoCh01G006780 vs. ExPASy Swiss-Prot
Match: Q4PCY0 (Pre-mRNA-splicing factor CWC22 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=CWC22 PE=3 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-04
Identity = 90/227 (39.65%), Postives = 105/227 (46.26%), Query Frame = 0


Query: 236 DSCSPTFLSTARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNY 295
           DS S + LS++   R RT      +   +        SYSSR   S S  SRS S  S  
Sbjct: 671 DSDSSSVLSSSTGSRSRTSYSS--YSRSSRSYSSGSGSYSSRSRSSRSYSSRSYSSRSYS 730

Query: 296 SSDRSRSRSHSPNRRRRSNDSPYRYRSYSP-----YSRRRYDSPYYRRHRSYSRSHSPC- 355
           S  RSRSRS S +R R  + S  R RS SP     + RRR  S  Y  + S SRS S   
Sbjct: 731 SRSRSRSRSRSRSRSRSRSRSRSRSRSRSPSEHQRHGRRRARSASYSSYSSRSRSSSSSS 790

Query: 356 --SRSPTRRRDRSYSRSHSP-------CSRSPTRRRDRSYSRSHSPCSRLPTRRHDRSYS 415
             SRS +R R RS+SRS +P       CSRSP  RR    SRS S   R  + R   S S
Sbjct: 791 SRSRSRSRSRSRSFSRSLTPRGSYSRSCSRSPVPRRRAPRSRSRSADPRKRSSRRSPSVS 850

Query: 416 PYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSAS 448
            Y             D S+SRS SP+A    RR     S RH RSAS
Sbjct: 851 SYS--------GSETDDSISRSPSPRAGYVDRR-----SHRHSRSAS 882

[Close]

BLAST of CmoCh01G006780 vs. ExPASy TrEMBL
Match: A0A6J1GAU6 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 690.3 bits (1780), Expect = 6.3e-195
Identity = 386/435 (88.74%), Postives = 386/435 (88.74%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS
Sbjct: 241 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
           YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 360

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 386

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 386

[Close]

BLAST of CmoCh01G006780 vs. ExPASy TrEMBL
Match: A0A6J1GAR1 (serine/arginine-rich splicing factor SR45a-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 644.8 bits (1662), Expect = 3.0e-181
Identity = 367/435 (84.37%), Postives = 367/435 (84.37%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRH                   RSYSRSHSPCSRSPTRRRDRS
Sbjct: 241 YRSYSPYSRRRYDSPYYRRH-------------------RSYSRSHSPCSRSPTRRRDRS 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
           YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 360

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 367

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 367

[Close]

BLAST of CmoCh01G006780 vs. ExPASy TrEMBL
Match: A0A6J1GBG9 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 641.7 bits (1654), Expect = 2.6e-180
Identity = 367/435 (84.37%), Postives = 367/435 (84.37%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRR   
Sbjct: 241 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRR--- 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
                           DRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 ----------------DRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 360

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 367

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 367

[Close]

BLAST of CmoCh01G006780 vs. ExPASy TrEMBL
Match: A0A6J1GAS3 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 604.4 bits (1557), Expect = 4.5e-169
Identity = 348/435 (80.00%), Postives = 348/435 (80.00%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRH                                      RS
Sbjct: 241 YRSYSPYSRRRYDSPYYRRH--------------------------------------RS 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
           YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 348

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 348

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 348

[Close]

BLAST of CmoCh01G006780 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 3.8e-168
Identity = 348/435 (80.00%), Postives = 348/435 (80.00%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRR                      
Sbjct: 241 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRR---------------------- 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
                           DRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 ----------------DRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 348

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 348

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 348

[Close]

BLAST of CmoCh01G006780 vs. NCBI nr
Match: XP_022948988.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata] >XP_022948989.1 serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 690.3 bits (1780), Expect = 1.3e-194
Identity = 386/435 (88.74%), Postives = 386/435 (88.74%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS
Sbjct: 241 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
           YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 360

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 386

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 386

[Close]

BLAST of CmoCh01G006780 vs. NCBI nr
Match: XP_022948991.1 (serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 644.8 bits (1662), Expect = 6.2e-181
Identity = 367/435 (84.37%), Postives = 367/435 (84.37%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRH                   RSYSRSHSPCSRSPTRRRDRS
Sbjct: 241 YRSYSPYSRRRYDSPYYRRH-------------------RSYSRSHSPCSRSPTRRRDRS 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
           YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 360

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 367

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 367

[Close]

BLAST of CmoCh01G006780 vs. NCBI nr
Match: XP_022948990.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 641.7 bits (1654), Expect = 5.3e-180
Identity = 367/435 (84.37%), Postives = 367/435 (84.37%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRR   
Sbjct: 241 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRR--- 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
                           DRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 ----------------DRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 360

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 367

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 367

[Close]

BLAST of CmoCh01G006780 vs. NCBI nr
Match: XP_023525007.1 (serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 619.8 bits (1597), Expect = 2.2e-173
Identity = 359/435 (82.53%), Postives = 365/435 (83.91%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRREL K
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELGK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGR+ITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTV VRRR RSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSP+RRRRSNDSPYR
Sbjct: 181 FGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPDRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYS RRYDSPYYR HRSYSRSHSPCSRSPTRRRDRSYSRSHSP SRSPTRRRDRS
Sbjct: 241 YRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSRSHSPYSRSPTRRRDRS 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
           YSRSHSP SR PTRR DRSYSPYDYCSPD YYRRHRD S+SRSVSPKARVSSRRYS SYS
Sbjct: 301 YSRSHSPYSRSPTRRRDRSYSPYDYCSPDPYYRRHRDGSISRSVSPKARVSSRRYSRSYS 360

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRH RSASRS+SRSRSYSRS+SPERSRR   HSHSI+PERRSSRSRS S TP  HKRGGY
Sbjct: 361 PRHCRSASRSYSRSRSYSRSISPERSRRSGRHSHSIAPERRSSRSRSCSSTPGCHKRGGY 386

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSV SRSVSPA
Sbjct: 421 SGGSGSVVSRSVSPA 386

[Close]

BLAST of CmoCh01G006780 vs. NCBI nr
Match: XP_022948992.1 (serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 604.4 bits (1557), Expect = 9.4e-169
Identity = 348/435 (80.00%), Postives = 348/435 (80.00%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 139
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 140 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 199
           HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK   
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK--- 120

Query: 200 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 259
                                                         ARRRRGRTPTPGRY
Sbjct: 121 ----------------------------------------------ARRRRGRTPTPGRY 180

Query: 260 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 319
           FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR
Sbjct: 181 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 240

Query: 320 YRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSPTRRRDRS 379
           YRSYSPYSRRRYDSPYYRRH                                      RS
Sbjct: 241 YRSYSPYSRRRYDSPYYRRH--------------------------------------RS 300

Query: 380 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 439
           YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS
Sbjct: 301 YSRSHSPCSRLPTRRHDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYS 348

Query: 440 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 499
           PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY
Sbjct: 361 PRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISPERRSSRSRSRSHTPRHHKRGGY 348

Query: 500 SGGSGSVASRSVSPA 515
           SGGSGSVASRSVSPA
Sbjct: 421 SGGSGSVASRSVSPA 348

[Close]

BLAST of CmoCh01G006780 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 219.2 bits (557), Expect = 7.9e-57
Identity = 204/418 (48.80%), Postives = 227/418 (54.31%), Query Frame = 0


Query: 77  RSQMSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRIT 136
           RS MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T
Sbjct: 28  RSPMSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVT 87

Query: 137 RRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLIT 196
            R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+IT
Sbjct: 88  ERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVIT 147

Query: 197 VEKLCVAALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRT 256
           VEK                                                 ARRRRGRT
Sbjct: 148 VEK-------------------------------------------------ARRRRGRT 207

Query: 257 PTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRS 316
           PTPG+Y GLRT   R +  SYS RRS      S S S S +YSSDR RS S S  RR RS
Sbjct: 208 PTPGKYLGLRTARGRHKSPSYSPRRS-----VSCSRSRSRSYSSDRGRSYSPSYGRRGRS 267

Query: 317 NDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSHSPCSRSP- 376
           +     YR    YS  R  SP  R +R   RS+SP  R   R R RSYSR+     RSP 
Sbjct: 268 SSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYR--RRDRSRSYSRNCRARDRSPY 327

Query: 377 TRRRDRSYSRSHSPCSRLPTRR-------HDRSYSPY------DYCSPDLYYRRHRDRSV 436
             RR RS SRS+SP  R   R         DRSYSP+       Y     YYRRH  RSV
Sbjct: 328 YMRRYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRDRSYSPESRYYRRH--RSV 382

Query: 437 SRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRSRSYSRSLSPERSRRFRSHSHSISP 478
           S SVSP  R  SR    S SPR  R  SRS SR      S+   RS R  S S S+SP
Sbjct: 388 SGSVSPGGRSMSR----SISPRKGRKESRSKSRRHDRQSSMCHSRSAR-SSTSRSVSP 382

[Close]

BLAST of CmoCh01G006780 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.5 bits (384), Expect = 9.1e-37
Identity = 84/120 (70.00%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 80  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRE 139
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 140 LEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK 197
           LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A RCI+ L+ SVL+GR+ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of CmoCh01G006780 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 130.6 bits (327), Expect = 3.7e-30
Identity = 113/265 (42.64%), Postives = 130/265 (49.06%), Query Frame = 0


Query: 81  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKH 140
           S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 141 FSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCVA 200
           F+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+    
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER---- 150

Query: 201 ALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRYF 260
                                                        +RR+R RTPTPG Y 
Sbjct: 151 ---------------------------------------------SRRKRPRTPTPGHYL 210

Query: 261 GLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYRY 320
           GL++   R   R   S R   Y           +Y   RS  R +SP   RRS     R 
Sbjct: 211 GLKS--SRDSDREGRSSRGRHYD--------RDDYRDRRSPRRDYSPRDERRSR----RD 228

Query: 321 RSYSPYSRRRYDSPYYRRHRSYSRS 346
           RSYSP+ R    SP  R  R   RS
Sbjct: 271 RSYSPHGR----SPERRSERRSERS 228

[Close]

BLAST of CmoCh01G006780 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-29
Identity = 82/140 (58.57%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 81  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELEK 140
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 141 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 200
           HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+   
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER--- 150

Query: 201 AALHQTQTTTNQTKQTHEVS 220
             LH  Q T    K TH  S
Sbjct: 151 KILH--QATIRDDKSTHPCS 165

[Close]

BLAST of CmoCh01G006780 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 125.9 bits (315), Expect = 9.1e-29
Identity = 113/266 (42.48%), Postives = 130/266 (48.87%), Query Frame = 0


Query: 81  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELEK 140
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 141 HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKLCV 200
           HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIKYLN+SVLEGR ITVE+   
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER--- 150

Query: 201 AALHQTQTTTNQTKQTHEVSEHWGCMPCISLFYLLIDSCSPTFLSTARRRRGRTPTPGRY 260
                                                         +RR+R RTPTPG Y
Sbjct: 151 ----------------------------------------------SRRKRPRTPTPGHY 210

Query: 261 FGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPNRRRRSNDSPYR 320
            GL++   R   R   S R   Y           +Y   RS  R +SP   RRS     R
Sbjct: 211 LGLKS--SRDSDREGRSSRGRHYD--------RDDYRDRRSPRRDYSPRDERRSR----R 229

Query: 321 YRSYSPYSRRRYDSPYYRRHRSYSRS 346
            RSYSP+ R    SP  R  R   RS
Sbjct: 271 DRSYSPHGR----SPERRSERRSERS 229

The following BLAST results are available for this feature:

BLAST of CmoCh01G006780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	1.1e-55	48.80	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q4PCY0	2.0e-04	39.65	Pre-mRNA-splicing factor CWC22 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=23...	[more]

BLAST of CmoCh01G006780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAU6	6.3e-195	88.74	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1GAR1	3.0e-181	84.37	serine/arginine-rich splicing factor SR45a-like isoform X3 OS=Cucurbita moschata...	[more]
A0A6J1GBG9	2.6e-180	84.37	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1GAS3	4.5e-169	80.00	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata...	[more]
A0A6J1GBJ2	3.8e-168	80.00	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]

BLAST of CmoCh01G006780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948988.1	1.3e-194	88.74	serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata] ...	[more]
XP_022948991.1	6.2e-181	84.37	serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita moschata]	[more]
XP_022948990.1	5.3e-180	84.37	serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata]	[more]
XP_023525007.1	2.2e-173	82.53	serine/arginine-rich splicing factor SR45a-like isoform X3 [Cucurbita pepo subsp...	[more]
XP_022948992.1	9.4e-169	80.00	serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita moschata]	[more]

BLAST of CmoCh01G006780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	7.9e-57	48.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	9.1e-37	70.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	3.7e-30	42.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	1.4e-29	58.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	9.1e-29	42.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 122..195 e-value: 2.3E-20 score: 83.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 123..192 e-value: 1.4E-14 score: 53.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 121..195 score: 15.852027
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 76..204 e-value: 2.7E-25 score: 91.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 437..451
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..514
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 457..484
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 408..422
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 351..401
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 87..376
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 87..376
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 84..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G006780.1	CmoCh01G006780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding