CmoCh01G006030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G006030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger protein CONSTANS-LIKE 4-like
Location	Cmo_Chr01: 3067137 .. 3067981 (+)
RNA-Seq Expression	CmoCh01G006030
Synteny	CmoCh01G006030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCACGCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTCATATATTCCCACAACCCTTCCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGGTAATTAATTTTACTAATTAATTTTTTTAATTTTATGTATATAAAATGTTAAAAGTTCGAATTTTTATAAGTCGGGAAAATTTGGCAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCTGTGGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGATTTACATCCTCCCGAGTCTTACTTTCTTTTTTTCTTCTTATTGTACCCTAAAACGTATGTAAAAGAAAAATATCTTTTGATTTCTCTTTTAAGAGTCGATGTTCGAACCTCTATCTCGTAATTGTTTGTATTGAAAGAAAAACAAAACAATCCG

mRNA sequence

ATGCACAGTCACGCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTCATATATTCCCACAACCCTTCCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCTGTGGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGATTTACATCCTCCCGAGTCTTACTTTCTTTTTTTCTTCTTATTGTACCCTAAAACGTATGTAAAAGAAAAATATCTTTTGATTTCTCTTTTAAGAGTCGATGTTCGAACCTCTATCTCGTAATTGTTTGTATTGAAAGAAAAACAAAACAATCCG

Coding sequence (CDS)

ATGCACAGTCACGCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTCATATATTCCCACAACCCTTCCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCTGTGGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA

Protein sequence

MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

Homology

[Close]

BLAST of CmoCh01G006030 vs. ExPASy TrEMBL
Match: A0A6J1GBJ0 (zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111452672 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 2.8e-106
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPT 60
           MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPT
Sbjct: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPT 60

Query: 61  SHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE 120
           SHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE
Sbjct: 61  SHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE 120

Query: 121 RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM 180
           RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM
Sbjct: 121 RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM 180

Query: 181 AEDDASWTTFLDSYSLNFVP 201
           AEDDASWTTFLDSYSLNFVP
Sbjct: 181 AEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of CmoCh01G006030 vs. ExPASy TrEMBL
Match: A0A6J1K781 (zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111492912 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.4e-102
Identity = 193/200 (96.50%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPT 60
           MHSH+AATADASLSHLQPPPPFPSFSN IYSHNP P+VEALEVSYSGSSSGGCSSYGSPT
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPIVEALEVSYSGSSSGGCSSYGSPT 60

Query: 61  SHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE 120
           SHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESSLIIEGMRRASPYTPQEKRHRIE
Sbjct: 61  SHPGLSHGPSSRRPLTRAYSSGHNERRGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE 120

Query: 121 RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM 180
           RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDNAM
Sbjct: 121 RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPIETWSCYDNAM 180

Query: 181 AEDDASWTTFLDSYSLNFVP 201
           AEDDASWTTFLDSYSLNFVP
Sbjct: 181 AEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of CmoCh01G006030 vs. ExPASy TrEMBL
Match: A0A6J1I3X3 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469436 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.4e-49
Identity = 135/232 (58.19%), Postives = 157/232 (67.67%), Query Frame = 0


Query: 1   MHSHAAATADASLSHLQ------PPPPFPSFSNFIYSHNP------SPMVE-----ALEV 60
           MH+ ++AT +ASL HL        PP   SF +FI SH+       +PM+E       E+
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSHSSLLASELAPMLEPSGLLPSEL 60

Query: 61  SYSGSSSGGCSSYGSPTSHP--GLSHGP--------TSRRPLTRAYSSGHNERGGEERAW 120
           SYS  SSG CSSY SPTS P   +SHGP             + RAY S ++ +G  E   
Sbjct: 61  SYS-CSSGPCSSYESPTSKPQRSMSHGPGVQISMLFDLESSVRRAYRS-NDLQGRTEMTN 120

Query: 121 SSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRG 180
           S+ESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADSR+RIRG
Sbjct: 121 SNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRIRG 180

Query: 181 RFARNEEAENSNSTSSPVETWSCYDNAMAE----DDASWTTFLDSYSLNFVP 201
           RFARNEE ENSNSTSSP ETWSCYDNA  E    DD SW TFLDSYS+NF+P
Sbjct: 181 RFARNEEVENSNSTSSPTETWSCYDNATTEEDGQDDGSWITFLDSYSVNFIP 230

[Close]

BLAST of CmoCh01G006030 vs. ExPASy TrEMBL
Match: A0A6J1HLZ0 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464822 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.9e-48
Identity = 135/232 (58.19%), Postives = 156/232 (67.24%), Query Frame = 0


Query: 1   MHSHAAATADASLSHL------QPPPPFPSFSNFIYSHNPS----------PMVEA---- 60
           MH+ ++AT +ASL HL        PP   SF +FI SH+ S          PM+E+    
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60

Query: 61  -LEVSYSGSSSGGCSSYGSPTSHP--GLSHGPTSR--------RPLTRAYSSGHNERGGE 120
             E+SYS  SSG CSSYGSPTS P   + H P  +          + RAYS  ++ +G  
Sbjct: 61  PSELSYS-CSSGPCSSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSF-NDLQGRT 120

Query: 121 ERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRK 180
           E A SSESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADSR+
Sbjct: 121 EMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRR 180

Query: 181 RIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE----DDASWTTFLDSYSL 197
           RIRGRFARNEE ENSNSTSSP ETWSCYDNA AE    DD SW TFLDSYS+
Sbjct: 181 RIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV 230

[Close]

BLAST of CmoCh01G006030 vs. ExPASy TrEMBL
Match: A0A0A0LUR6 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 136/247 (55.06%), Postives = 152/247 (61.54%), Query Frame = 0


Query: 1   MHSHAAATADASLSHLQ------PPPPFPSFSNFIYSHNPS-----------PMVEALE- 60
           MHS + A  D S+ HL        PP FPSF NF  SH+ S           P++E+ E 
Sbjct: 1   MHSFSPA-VDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPEL 60

Query: 61  -----VSYSGSSSGGCSSYGSPT-SHPGL---------------SHGP---------TSR 120
                +SYSG SSG CSSYGSPT S P L                HGP         T  
Sbjct: 61  LPSEVISYSG-SSGPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDM 120

Query: 121 RPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFN 180
             + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EKR RIERYKTKRNQRNFN
Sbjct: 121 PAVRRVYSSG-DLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFN 180

Query: 181 KKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDASW 195
           KKIKYECRKTLADSR+RIRGRFARNEE EN NSTSSP+E WSCY+N M E     DD SW
Sbjct: 181 KKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSW 240

[Close]

BLAST of CmoCh01G006030 vs. NCBI nr
Match: XP_022949263.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata])

HSP 1 Score: 394.4 bits (1012), Expect = 5.7e-106
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPT 60
           MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPT
Sbjct: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPT 60

Query: 61  SHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE 120
           SHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE
Sbjct: 61  SHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE 120

Query: 121 RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM 180
           RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM
Sbjct: 121 RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM 180

Query: 181 AEDDASWTTFLDSYSLNFVP 201
           AEDDASWTTFLDSYSLNFVP
Sbjct: 181 AEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of CmoCh01G006030 vs. NCBI nr
Match: KAG6607222.1 (Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 383.6 bits (984), Expect = 1.0e-102
Identity = 197/202 (97.52%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGS 60
           MHSH+AATADASLSHLQPPPPFPSFSN IYSHNP PMVEALEVSYSGSSSGGC  SSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 201
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 202

[Close]

BLAST of CmoCh01G006030 vs. NCBI nr
Match: XP_022998187.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima])

HSP 1 Score: 382.1 bits (980), Expect = 2.9e-102
Identity = 193/200 (96.50%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGCSSYGSPT 60
           MHSH+AATADASLSHLQPPPPFPSFSN IYSHNP P+VEALEVSYSGSSSGGCSSYGSPT
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPIVEALEVSYSGSSSGGCSSYGSPT 60

Query: 61  SHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE 120
           SHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESSLIIEGMRRASPYTPQEKRHRIE
Sbjct: 61  SHPGLSHGPSSRRPLTRAYSSGHNERRGEERAWSSESSLIIEGMRRASPYTPQEKRHRIE 120

Query: 121 RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM 180
           RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDNAM
Sbjct: 121 RYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPIETWSCYDNAM 180

Query: 181 AEDDASWTTFLDSYSLNFVP 201
           AEDDASWTTFLDSYSLNFVP
Sbjct: 181 AEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of CmoCh01G006030 vs. NCBI nr
Match: KAG7036907.1 (Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 381.7 bits (979), Expect = 3.8e-102
Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGS 60
           MHSH+AATADASLSHLQPPPPFPSFSN I+SHNP PMVEALEVSYSGSSSGGC  SSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 201
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 202

[Close]

BLAST of CmoCh01G006030 vs. NCBI nr
Match: XP_023524572.1 (uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.7 bits (779), Expect = 6.0e-79
Identity = 158/166 (95.18%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 37  MVEALEVSYSGSSSGGC--SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWS 96
           MVEALEVSYSGSSSGGC  SSYGSPTSHPGLSH PTSRRPLTRAYSSGHNER GEER WS
Sbjct: 1   MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWS 60

Query: 97  SESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRF 156
           SESS+IIEGMRRASPYTPQEKRHRIERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRF
Sbjct: 61  SESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRF 120

Query: 157 ARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP 201
           ARNEEAENSNSTSSPVETWSCYDNAM EDDASWTTFLDSYSLNFVP
Sbjct: 121 ARNEEAENSNSTSSPVETWSCYDNAMPEDDASWTTFLDSYSLNFVP 166

[Close]

BLAST of CmoCh01G006030 vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-21
Identity = 83/211 (39.34%), Postives = 105/211 (49.76%), Query Frame = 0


Query: 15  HLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSG-SSSGGCSSYGSP-------------- 74
           H  PPPP         S   +  V       SG +  GG SS  SP              
Sbjct: 36  HQFPPPPLALLMMSQNSLYAAEAVSGFGYFDSGMNGGGGSSSCDSPSSMGSGGESLVMQR 95

Query: 75  --TSHPGLSHGPTSRR--------PLTRAYSSG---HNERGGEERAWSSESSLIIEGMRR 134
             +SH G S   T+          P+ RA S+G    + R      W SES+ IIEGM +
Sbjct: 96  SVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGDLPRSSRRESSTVW-SESNAIIEGMSK 155

Query: 135 ASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNST 194
           A  Y+P+EK+ +IE+Y++KRN RNFNK+IKYECRKTLADSR RIRGRFARN+E       
Sbjct: 156 AYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEISQQEQV 215

Query: 195 SSPVETWSCYDNAMAEDDASWTTFLDSYSLN 198
                       A+  D  +W +FLDS+S N
Sbjct: 216 D--------VMEAVVGDVDTWASFLDSFSAN 237

[Close]

BLAST of CmoCh01G006030 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-13
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 0


Query: 36  PMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSS 95
           PM+++  +SY+  SS   + + S                + R YS+G  +   E +  S 
Sbjct: 149 PMMDSSNLSYNNLSSPENAFFSS---------------QMRRVYSTGDLQNNMEMQRSSE 208

Query: 96  ESSLII--EGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGR 155
            S++    E   +   Y+ +E++ +I +Y+ KRNQRNF K IKY CRKTLADSR RIRGR
Sbjct: 209 NSTMPFSEEQNFKVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGR 268

Query: 156 FARNEE-AENSNSTSSPVETWSCYDNAMAEDDASWTTFL 192
           FARN+E  E  N      E W   D    +++AS ++F+
Sbjct: 269 FARNDEVVEIPNIEDDDSELWK-LDGLHEKEEASVSSFV 291

[Close]

BLAST of CmoCh01G006030 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 104 MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 163
           + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 359

Query: 164 NSTSSPVETWSCYDNAMAEDD 185
           N      + +S + +   EDD
Sbjct: 360 NR-----QAFSSHHDDEDEDD 375

[Close]

BLAST of CmoCh01G006030 vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 104 MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 163
           + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    
Sbjct: 299 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 358

Query: 164 NSTSSPVETWSCYDNAMAEDD 185
           N      + +S + +   EDD
Sbjct: 359 NR-----QAFSSHHDDEDEDD 374

[Close]

BLAST of CmoCh01G006030 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 88  GEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSR 147
           GE+   +SE  +  E   +   Y+ +E++ RI RY  K+NQRNFNK IKY CRKTLAD R
Sbjct: 112 GEQSWGNSEGGIQAEPNTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRR 171

Query: 148 KRIRGRFARNEE 160
            R+RGRFARN +
Sbjct: 172 VRVRGRFARNND 183

The following BLAST results are available for this feature:

BLAST of CmoCh01G006030 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G006030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBJ0	2.8e-106	100.00	zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K781	1.4e-102	96.50	zinc finger protein CONSTANS-LIKE 4-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1I3X3	2.4e-49	58.19	zinc finger protein CONSTANS-LIKE 5-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HLZ0	5.9e-48	58.19	zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0LUR6	1.4e-46	55.06	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV...	[more]

BLAST of CmoCh01G006030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949263.1	5.7e-106	100.00	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata]	[more]
KAG6607222.1	1.0e-102	97.52	Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022998187.1	2.9e-102	96.50	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima]	[more]
KAG7036907.1	3.8e-102	97.03	Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_023524572.1	6.0e-79	95.18	uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G006030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	1.2e-21	39.34	CCT motif family protein	[more]
AT5G41380.1	2.7e-13	35.85	CCT motif family protein	[more]
AT2G33350.1	3.0e-12	46.91	CCT motif family protein	[more]
AT2G33350.2	3.0e-12	46.91	CCT motif family protein	[more]
AT3G12890.1	3.9e-12	52.78	activator of spomin::LUC2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 116..157 e-value: 5.4E-17 score: 61.6
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 115..157 score: 14.743135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..78
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 71..195
None	No IPR available	PANTHER	PTHR31319:SF73	CCT MOTIF FAMILY PROTEIN	coord: 71..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G006030.1	CmoCh01G006030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding