CmoCh01G005660 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G005660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionvon Willebrand factor, type A
LocationCmo_Chr01: 2848252 .. 2849929 (-)
RNA-Seq ExpressionCmoCh01G005660
SyntenyCmoCh01G005660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATACCCTTAACCAAATCCAAACTCTATTATGGCCATGTCAATGCTGTCTGTTCATTTGGGTTAAAGCTGTTATGAGTTTTGTACCAAAGTTTCAAGTATGTCGTATGATGAATCAGAGGCTCACTTTGTTACTGTTGAAGTTGTCTTTGATGTTTCGACAGACAGCTCAACCTATTTTCAGAGGCGAAGTTCATGGACGCGGCTTCTTTACACTTTGAACCCATTGTTGAAATTGGCTAAAAGTTCGTTCTGAGAATAAGATTTCACAAAACTAATAGGCCGCTCAGTTTCGTAGGAAGGCCGATTTCCAATGGTTTTACTTGCAGTGTACTCAAAATTGAACCCCCAGTAGACAATTCCCATTCTCATATTCATGTGGACGTGCAGGAGCTTTATATTGGCTGATTATTCAGTGGCATTTGACATTCATATTTCTTAGTCTAAGTTATAAAAGTATCTTAGGCCGAAAGGTCATTCATATGAAATCTTATATCGGTTGGAAAGGAGAACGGTTCTCTGGGCTTTGAAAGAGGGTGGATTGTTAGATCCCACCTTAGTCGGGGAGACCTAAACATTTTATAAGGGTATGGAGACACATTTTAAAAACCTTGAAAAGTCCGAAAGGGAAAATTCAAAAAAGAAAATATTTGCTAGTGATGGATTTGAGCCATTACAAATGGTATTAGAGCTGGACATCGAGCGATGTACCAACGAGGAGGCTAGCCTAAGAGGGTGGACACGAGGCGATGTGCCAACAAGGACTTCGGACTCCGAAGGGATGGATTTAAAATCTCGAGAATGATTTTTAAAATCTCATGAATGATTACGATGAAACTGAAATTTCCAAGATCAAATTCAAAACCAAGACAACAAAATAGATACAATGCAATTTCTTAATGATTATCATTGGCAATGATCAATGTATTTGTAGTGCTTTTCGAAAGCGTTGCAACAAGGAAAGATGGGAAGCAACCACTCGTTCACTTTCCACAGGATGATATGTTGTAGAACGGTCACGCCAATTACACATTAAACTTTCTTTCTGGTGTAAAATTAATTTCTATAAATAAACTAAATCTCAATCAAAGATATATACACCTAATTGCTCTCATCGTAGAGGAAAAAAAATTGTATTACATGACGACTACCCAATTCATGACCATCTCTCTCTGTACAGTTTCACCCGCACTGGAACTACAGGCACACAAGTCGTCCGACCATCCTGCCATCCTCTATCACATTAGGCCTTTGGCGTCACCAATAATCAGAATTGAAGAGAGTTGGGTGGTGTTGTATAATATCCATTATCCATTTCCACTGTGCTGGCCAGATTCCCTCCACTAGCTTTGGTCCTTGACGATTGCTCGTTTATCAACTTTCTTACCCATAAAATATGGGGGAACATACTTGAAGTTTGAAGAAGAGATGAACCAAAATGAATATTTACGAGCTTGCCTGTCCCCAGAAAGAAATCAAATAAGAGCAGCAATAATTCTTGGTCATCTAAGGTACAAAGCCTACTCTGAATCGGAGTCTATAGAAAGGAACATCCGCTGTCTGACAGAACGCTTCTGGCGAGGGAAGGAGAATGGGCTATCTGATCTTTGCCGGCTTGCTTTCTCATTTCTAACGTCGTTCATTCCAAGAAGCAGAGAAGCTGATGCAACAATATAG

mRNA sequence

ATGCATACCCTTAACCAAATCCAAACTCTATTATGGCCATGTCAATGCTGTCTGTTCATTTGGGTTAAAGCTGTTATGAGTTTTGTACCAAAGTTTCAAGTATGTCGTATGATGAATCAGAGGCTCACTTTGTTACTGTTGAAGTTGTCTTTGATGTTTCGACAGACAGCTCAACCTATTTTCAGAGGCGAAAACGGTCACGCCAATTACACATTAAACTTTCTTTCTGGTGTAAAATTAATTTCTATAAATAAACTAAATCTCAATCAAAGATATATACACCTAATTGCTCTCATCGTAGAGGAAAAAAAATTGTATTACATGACGACTACCCAATTCATGACCATCTCTCTCTGTACAGTTTCACCCGCACTGGAACTACAGGCACACAAGTCGTCCGACCATCCTGCCATCCTCTATCACATTAGGCCTTTGGCGTCACCAATAATCAGAATTGAAGAGAGTTGGGTGCTTTGGTCCTTGACGATTGCTCGTTTATCAACTTTCTTACCCATAAAATATGGGGGAACATACTTGAAGTTTGAAGAAGAGATGAACCAAAATGAATATTTACGAGCTTGCCTGTCCCCAGAAAGAAATCAAATAAGAGCAGCAATAATTCTTGGTCATCTAAGGTACAAAGCCTACTCTGAATCGGAGTCTATAGAAAGGAACATCCGCTGTCTGACAGAACGCTTCTGGCGAGGGAAGGAGAATGGGCTATCTGATCTTTGCCGGCTTGCTTTCTCATTTCTAACGTCGTTCATTCCAAGAAGCAGAGAAGCTGATGCAACAATATAG

Coding sequence (CDS)

ATGCATACCCTTAACCAAATCCAAACTCTATTATGGCCATGTCAATGCTGTCTGTTCATTTGGGTTAAAGCTGTTATGAGTTTTGTACCAAAGTTTCAAGTATGTCGTATGATGAATCAGAGGCTCACTTTGTTACTGTTGAAGTTGTCTTTGATGTTTCGACAGACAGCTCAACCTATTTTCAGAGGCGAAAACGGTCACGCCAATTACACATTAAACTTTCTTTCTGGTGTAAAATTAATTTCTATAAATAAACTAAATCTCAATCAAAGATATATACACCTAATTGCTCTCATCGTAGAGGAAAAAAAATTGTATTACATGACGACTACCCAATTCATGACCATCTCTCTCTGTACAGTTTCACCCGCACTGGAACTACAGGCACACAAGTCGTCCGACCATCCTGCCATCCTCTATCACATTAGGCCTTTGGCGTCACCAATAATCAGAATTGAAGAGAGTTGGGTGCTTTGGTCCTTGACGATTGCTCGTTTATCAACTTTCTTACCCATAAAATATGGGGGAACATACTTGAAGTTTGAAGAAGAGATGAACCAAAATGAATATTTACGAGCTTGCCTGTCCCCAGAAAGAAATCAAATAAGAGCAGCAATAATTCTTGGTCATCTAAGGTACAAAGCCTACTCTGAATCGGAGTCTATAGAAAGGAACATCCGCTGTCTGACAGAACGCTTCTGGCGAGGGAAGGAGAATGGGCTATCTGATCTTTGCCGGCTTGCTTTCTCATTTCTAACGTCGTTCATTCCAAGAAGCAGAGAAGCTGATGCAACAATATAG

Protein sequence

MHTLNQIQTLLWPCQCCLFIWVKAVMSFVPKFQVCRMMNQRLTLLLLKLSLMFRQTAQPIFRGENGHANYTLNFLSGVKLISINKLNLNQRYIHLIALIVEEKKLYYMTTTQFMTISLCTVSPALELQAHKSSDHPAILYHIRPLASPIIRIEESWVLWSLTIARLSTFLPIKYGGTYLKFEEEMNQNEYLRACLSPERNQIRAAIILGHLRYKAYSESESIERNIRCLTERFWRGKENGLSDLCRLAFSFLTSFIPRSREADATI
Homology
[Close]
BLAST of CmoCh01G005660 vs. ExPASy TrEMBL
Match: A0A1R3HLK1 (von Willebrand factor, type A OS=Corchorus capsularis OX=210143 GN=CCACVL1_18347 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-06
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 216 YSESESIERNIRCLTERFWRGKENGLSDLCRLAFSFLTSFIPRSREA 263
           YSESESIER    LTERF RG + GLSDLC L FS L SFIP  REA
Sbjct: 440 YSESESIERYNLGLTERFCRGNKKGLSDLCLLDFSDLLSFIPSRREA 486

[Close]
BLAST of CmoCh01G005660 vs. ExPASy TrEMBL
Match: A0A1R3KRM7 (von Willebrand factor, type A OS=Corchorus olitorius OX=93759 GN=COLO4_05187 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 216 YSES-ESIERNIRCLTERFWRGKENGLSDLCRLAFSFLTSFIPRSREA 263
           YSES ESIER    LTERF RG + GLSDLC L FS L SF+P  REA
Sbjct: 482 YSESEESIERYNLGLTERFCRGNKKGLSDLCLLDFSDLLSFMPSRREA 529

[Close]
BLAST of CmoCh01G005660 vs. NCBI nr
Match: OMO71229.1 (von Willebrand factor, type A [Corchorus capsularis])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 216 YSESESIERNIRCLTERFWRGKENGLSDLCRLAFSFLTSFIPRSREA 263
           YSESESIER    LTERF RG + GLSDLC L FS L SFIP  REA
Sbjct: 440 YSESESIERYNLGLTERFCRGNKKGLSDLCLLDFSDLLSFIPSRREA 486

[Close]
BLAST of CmoCh01G005660 vs. NCBI nr
Match: OMP09731.1 (von Willebrand factor, type A [Corchorus olitorius])

HSP 1 Score: 55.5 bits (132), Expect = 8.4e-04
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 216 YSES-ESIERNIRCLTERFWRGKENGLSDLCRLAFSFLTSFIPRSREA 263
           YSES ESIER    LTERF RG + GLSDLC L FS L SF+P  REA
Sbjct: 482 YSESEESIERYNLGLTERFCRGNKKGLSDLCLLDFSDLLSFMPSRREA 529

The following BLAST results are available for this feature:
BLAST of CmoCh01G005660 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G005660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3HLK17.4e-0670.21von Willebrand factor, type A OS=Corchorus capsularis OX=210143 GN=CCACVL1_18347... [more]
A0A1R3KRM74.1e-0466.67von Willebrand factor, type A OS=Corchorus olitorius OX=93759 GN=COLO4_05187 PE=... [more]
BLAST of CmoCh01G005660 vs. NCBI nr
Match NameE-valueIdentityDescription
OMO71229.11.5e-0570.21von Willebrand factor, type A [Corchorus capsularis][more]
OMP09731.18.4e-0466.67von Willebrand factor, type A [Corchorus olitorius][more]
BLAST of CmoCh01G005660 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G005660.1CmoCh01G005660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0005634 nucleus