CmoCh01G005340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G005340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 2630772 .. 2631630 (+)
RNA-Seq ExpressionCmoCh01G005340
SyntenyCmoCh01G005340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATCTCACAGGAACTCAACTATGAACACAGATGAAAAACACAAAATTTTCTCAACTCAATCATTCAAATCAATTTCAAAAGACAAATCCTAAGATTTGTGGCCGACCCACTTAACCTTTGCCACTAAAAACAACTCATATAAAGCAATACAAACACTCCTTCCTTCACCAACACAAACATTCACTCTCAAAGACAAGCTTCAAAATAGTAAATTATTCATTGTTTTCCCCTTCTTTTGATTACAATTCATGCACAACCCATAAAGCTTTGAACTTTATGTGATTCTTTTTTGCAGCTGAGAAGATGAAGATGAGACGTGTAGCGGTTGGCGTAGTGATGTTGTTCATGATTATCAACACTTTGTTTGTTGCTGATGGAAGGCACTTGAAGTTGCAACAACAAAGGGATGAGAACCAAAACTTGGAACCCAAAAAGCACTATGAAACTAATGAATACAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAGAAAGGAGACAAGGGAATAGTGCTTCTTTTCTCAACATATATATATATATATATATATGTTTGTTTATGCATGTATGTTTTTGTTCATGTTTTGTATAAGTTTAATACCCATTTTTCTGGCTGGCTAGGGTTGGCTTAGAAAGATGGTATCTAACGAGGATGTTTGGTATGTAATATATATTTGTAGGTTAATAATGAAGGATGCATGCACCATGTGTATTTACGTTATGGTTTATAGAGTTGTTTTATATCCTATATATTACTTCGAGCTCTCTCGTATTTGGGGTTCGATCAGATCTTAACGAGAAACTGATGGAATAAGATAATTGTTTATTTTTTCTCTCCTAAAAA

mRNA sequence

ATGGCTGAGAAGATGAAGATGAGACGTGTAGCGGTTGGCGTAGTGATGTTGTTCATGATTATCAACACTTTGTTTGTTGCTGATGGAAGGCACTTGAAGTTGCAACAACAAAGGGATGAGAACCAAAACTTGGAACCCAAAAAGCACTATGAAACTAATGAATACAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAGAAAGGAGACAAGGGAATAGTGCTTCTTTTCTCAACATATATATATATATATATATATGTTTGTTTATGCATGTATGTTTTTGTTCATGTTTTGTATAAGTTTAATACCCATTTTTCTGGCTGGCTAGGGTTGGCTTAGAAAGATGGTATCTAACGAGGATGTTTGGTATGTAATATATATTTGTAGGTTAATAATGAAGGATGCATGCACCATGTGTATTTACGTTATGGTTTATAGAGTTGTTTTATATCCTATATATTACTTCGAGCTCTCTCGTATTTGGGGTTCGATCAGATCTTAACGAGAAACTGATGGAATAAGATAATTGTTTATTTTTTCTCTCCTAAAAA

Coding sequence (CDS)

ATGGCTGAGAAGATGAAGATGAGACGTGTAGCGGTTGGCGTAGTGATGTTGTTCATGATTATCAACACTTTGTTTGTTGCTGATGGAAGGCACTTGAAGTTGCAACAACAAAGGGATGAGAACCAAAACTTGGAACCCAAAAAGCACTATGAAACTAATGAATACAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAACAGAAAGGAGACAAGGGAATAG

Protein sequence

MAEKMKMRRVAVGVVMLFMIINTLFVADGRHLKLQQQRDENQNLEPKKHYETNEYNHHGCYRSDYNCWSNRKETRE
Homology
[Close]
BLAST of CmoCh01G005340 vs. ExPASy TrEMBL
Match: A0A5D3CI92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold952G00100 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 10 VAVGVVMLFMIINTLFVADGRHLKLQQQRD-----ENQNLEPKKHYETNEYNHHGCYRSD 69
          VAV +++  MI+NT F+ DGRHL+LQ +       E+Q L  +K YET+EYNHHGCYRSD
Sbjct: 7  VAVVIMLALMIMNTFFLVDGRHLELQDEEHEKNPIESQKLRGRKQYETSEYNHHGCYRSD 66

Query: 70 YNCWSNRKETRE 77
          YNCWSN KET+E
Sbjct: 67 YNCWSN-KETKE 77

[Close]
BLAST of CmoCh01G005340 vs. NCBI nr
Match: KAG6607148.1 (hypothetical protein SDJN03_00490, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.7 bits (387), Expect = 6.5e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 2  AEKMKMRRVAVGVVMLFMIINTLFVADGRHLKLQQQRDENQNLEPKKHYETNEYNHHGCY 61
          AEKMKMRRVAVGVVMLFMIINTLFVADGRHLKLQQQRDENQNLEPKKHYETNEYNHHGCY
Sbjct: 18 AEKMKMRRVAVGVVMLFMIINTLFVADGRHLKLQQQRDENQNLEPKKHYETNEYNHHGCY 77

Query: 62 RSDYNCWSNRKETRE 77
          RSDYNCWSNRKETRE
Sbjct: 78 RSDYNCWSNRKETRE 92

[Close]
BLAST of CmoCh01G005340 vs. NCBI nr
Match: KAA0051747.1 (hypothetical protein E6C27_scaffold60G001390 [Cucumis melo var. makuwa] >TYK11551.1 hypothetical protein E5676_scaffold952G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 4.8e-13
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 10 VAVGVVMLFMIINTLFVADGRHLKLQQQRD-----ENQNLEPKKHYETNEYNHHGCYRSD 69
          VAV +++  MI+NT F+ DGRHL+LQ +       E+Q L  +K YET+EYNHHGCYRSD
Sbjct: 7  VAVVIMLALMIMNTFFLVDGRHLELQDEEHEKNPIESQKLRGRKQYETSEYNHHGCYRSD 66

Query: 70 YNCWSNRKETRE 77
          YNCWSN KET+E
Sbjct: 67 YNCWSN-KETKE 77

The following BLAST results are available for this feature:
BLAST of CmoCh01G005340 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G005340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CI922.3e-1359.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CmoCh01G005340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607148.16.5e-34100.00hypothetical protein SDJN03_00490, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0051747.14.8e-1359.72hypothetical protein E6C27_scaffold60G001390 [Cucumis melo var. makuwa] >TYK1155... [more]
BLAST of CmoCh01G005340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G005340.1CmoCh01G005340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane