CmoCh01G005140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G005140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor CSA-like
Location	Cmo_Chr01: 2470433 .. 2471014 (-)
RNA-Seq Expression	CmoCh01G005140
Synteny	CmoCh01G005140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCGAGAGGGCACTGGAGGCCAGCAGAGGACGCCAAGCTAAGGGAGCTAGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCCGAGAAACTGGACGGCAGATCTGGTAGTGTGGTGGTTTAAAATCACAAGTTTTTAAGGTAATTCACTGACATGGGGGTTGTTGTTTTGGACAAGATAGGTAAGAGCTGCAGGCTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACAAGAGGAAGAGGAGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTGTTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGCAGACACCATTTTGGTGCTGGAAGGCGGCGCAGGAGAACGACAACCTCGGATGAAGATTCAGCTACAAATCAACCGCCGCCGTTTATGGACCGGCGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA

mRNA sequence

ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCGAGAGGGCACTGGAGGCCAGCAGAGGACGCCAAGCTAAGGGAGCTAGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCCGAGAAACTGGACGGCAGATCTGGTAAGAGCTGCAGGCTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACAAGAGGAAGAGGAGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTGTTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGCAGACACCATTTTGGTGCTGGAAGGCGGCGCAGGAGAACGACAACCTCGGATGAAGATTCAGCTACAAATCAACCGCCGCCGTTTATGGACCGGCGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA

Coding sequence (CDS)

ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCGAGAGGGCACTGGAGGCCAGCAGAGGACGCCAAGCTAAGGGAGCTAGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCCGAGAAACTGGACGGCAGATCTGGTAAGAGCTGCAGGCTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACAAGAGGAAGAGGAGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTGTTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGCAGACACCATTTTGGTGCTGGAAGGCGGCGCAGGAGAACGACAACCTCGGATGAAGATTCAGCTACAAATCAACCGCCGCCGTTTATGGACCGGCGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA

Protein sequence

MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT

Homology

[Close]

BLAST of CmoCh01G005140 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-58
Identity = 104/137 (75.91%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 10  GTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN 69
           G   K CARGHWRPAEDAKL++LVA YGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN
Sbjct: 41  GVQGKLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN 100

Query: 70  RRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRRR 129
           RRAFT+EEEERLM AHR +GNKWA+IARLFPGRTDN VKNHWHV+MAR+ R   GA RRR
Sbjct: 101 RRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSGAFRRR 160

Query: 130 RRTTTSDEDSATNQPPP 147
           + +++S   +    PPP
Sbjct: 161 KPSSSSASPAPAPAPPP 177

[Close]

BLAST of CmoCh01G005140 vs. ExPASy Swiss-Prot
Match: Q9LQX5 (Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.0e-55
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 8   NSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPR 67
           +S +      RGHWRPAED KL+ELV++YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPR
Sbjct: 88  SSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPR 147

Query: 68  INRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGR 127
           INRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHV+MARK R H  A R
Sbjct: 148 INRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYR 207

Query: 128 RRR 131
           RR+
Sbjct: 208 RRK 210

[Close]

BLAST of CmoCh01G005140 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-54
Identity = 105/141 (74.47%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 10  GTNAKA-CARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 69
           G ++KA  +RGHWRPAED KL+ELVA+YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPRI
Sbjct: 98  GHSSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRI 157

Query: 70  NRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRR 129
           NRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R    +  R
Sbjct: 158 NRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQ-SSSYR 217

Query: 130 RRRTTTSDEDSATNQPPPFMD 150
           RR+T  S +      P  F D
Sbjct: 218 RRKTMVSLKPLINPNPHIFND 237

[Close]

BLAST of CmoCh01G005140 vs. ExPASy Swiss-Prot
Match: Q6R053 (Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-50
Identity = 96/145 (66.21%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 9   SGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 68
           SG N K C+RGHWRP EDAKL+ELVA +GPQNWNLI+  L GRSGKSCRLRWFNQLDPRI
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 69  NRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRR 128
           N+RAFT+EEE RL+ AHR +GNKWA+I+RLFPGRTDN VKNHWHVIMAR+ R      +R
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE----SQR 203

Query: 129 RRRTTTSDEDSATNQPPPFMDRRVE 154
           +R+           QPPP + R  E
Sbjct: 204 QRQ-----------QPPPTLSRDAE 213

[Close]

BLAST of CmoCh01G005140 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-47
Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 16  CARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQ 75
           C+RGHWRPAED KLRELV  +GP NWN IA+KL GRSGKSCRLRWFNQLDPRINR  FT+
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 76  EEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 121
           EEEERL+ +HR+HGN+W++IAR FPGRTDN VKNHWHVIMAR+ R
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGR 107

[Close]

BLAST of CmoCh01G005140 vs. ExPASy TrEMBL
Match: A0A6J1GCC3 (transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111452673 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 8.3e-96
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60
           MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW
Sbjct: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60

Query: 61  FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120
           FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR
Sbjct: 61  FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120

Query: 121 HHFGAGRRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 169
           HHFGAGRRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT
Sbjct: 121 HHFGAGRRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 168

[Close]

BLAST of CmoCh01G005140 vs. ExPASy TrEMBL
Match: A0A6J1KCI9 (transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111492634 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.4e-87
Identity = 153/162 (94.44%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 7   MNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 66
           MNSGTNAKACARGHWRPAEDAKL+ELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP
Sbjct: 1   MNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 60

Query: 67  RINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 126
           RINRRAFT EEE RLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHF AG
Sbjct: 61  RINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAG 120

Query: 127 RRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 169
           RRRRRT TSDEDS TN+PP FMDR VEPALFFDFLGVGGGPT
Sbjct: 121 RRRRRTATSDEDSPTNEPPSFMDRSVEPALFFDFLGVGGGPT 162

[Close]

BLAST of CmoCh01G005140 vs. ExPASy TrEMBL
Match: A0A5C7HHP7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017830 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.8e-57
Identity = 119/184 (64.67%), Postives = 134/184 (72.83%), Query Frame = 0


Query: 4   KSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQ 63
           ++D +S    K CARGHWRPAED KL+ELVALYGPQNWNLIAEKL+GRSGKSCRLRWFNQ
Sbjct: 151 ETDTSSSGQTKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ 210

Query: 64  LDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHF 123
           LDPRINRRAF++EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R   
Sbjct: 211 LDPRINRRAFSEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQS 270

Query: 124 GAGRRRRRT------TTSDEDSATNQPPPFMDRRV---------------EPALFFDFLG 167
            A RRR+ +      TT  E  AT+Q P F+ R                  P  F +F+G
Sbjct: 271 SAYRRRKMSHHHSIYTTRME--ATDQIPGFVYRDAAAPRSTEPPPQQAYPSPYQFGNFIG 330

[Close]

BLAST of CmoCh01G005140 vs. ExPASy TrEMBL
Match: A0A0E0C0M6 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 7.6e-57
Identity = 106/137 (77.37%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 10  GTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN 69
           G   K CARGHWRPAEDAKL++LVA YGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN
Sbjct: 42  GVQGKLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN 101

Query: 70  RRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRRR 129
           RRAFT+EEEERLM AHR +GNKWA+IARLFPGRTDN VKNHWHV+MAR+ R   GA RRR
Sbjct: 102 RRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSGAFRRR 161

Query: 130 RRTTTSDEDSATNQPPP 147
           + +++S   SA   PPP
Sbjct: 162 KPSSSSSSASAAPAPPP 178

[Close]

BLAST of CmoCh01G005140 vs. ExPASy TrEMBL
Match: A0A2U1MHI7 (Homeodomain-like protein OS=Artemisia annua OX=35608 GN=CTI12_AA380910 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.2e-56
Identity = 108/143 (75.52%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 8   NSGTN----AKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQ 67
           N+GT      K CARGHWRPAEDAKL+ELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQ
Sbjct: 64  NNGTRIRPAMKTCARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQ 123

Query: 68  LDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHF 127
           LDPRINR+AF+ EEEERLM AHR++GNKWA+IARLFPGRTDN VKNHWHVIMARK R   
Sbjct: 124 LDPRINRKAFSDEEEERLMTAHRMYGNKWALIARLFPGRTDNAVKNHWHVIMARKYREQS 183

Query: 128 GAGRRRRRTTTSDEDSATNQPPP 147
            A R+RR   T ++   T  PPP
Sbjct: 184 NAHRKRRMLITQNQIQTTTPPPP 206

[Close]

BLAST of CmoCh01G005140 vs. NCBI nr
Match: XP_022949264.1 (transcription factor CSA-like [Cucurbita moschata])

HSP 1 Score: 359.4 bits (921), Expect = 1.7e-95
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60
           MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW
Sbjct: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60

Query: 61  FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120
           FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR
Sbjct: 61  FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120

Query: 121 HHFGAGRRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 169
           HHFGAGRRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT
Sbjct: 121 HHFGAGRRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 168

[Close]

BLAST of CmoCh01G005140 vs. NCBI nr
Match: KAG6607124.1 (Transcription factor CSA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.7 bits (901), Expect = 3.6e-93
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60
           M TKS+MNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW
Sbjct: 1   MGTKSEMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60

Query: 61  FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120
           FNQLDPRINRRAFT EEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR
Sbjct: 61  FNQLDPRINRRAFTHEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120

Query: 121 HHFGAGRRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 169
           HHFGAGRRRRRTTTSDE SATNQPPPFMDRRVEPALFFDFLGVGGGPT
Sbjct: 121 HHFGAGRRRRRTTTSDEHSATNQPPPFMDRRVEPALFFDFLGVGGGPT 168

[Close]

BLAST of CmoCh01G005140 vs. NCBI nr
Match: KAG7036816.1 (Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.7 bits (870), Expect = 1.4e-89
Identity = 159/162 (98.15%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 7   MNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 66
           MNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP
Sbjct: 1   MNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 60

Query: 67  RINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 126
           RINRRAFT EEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG
Sbjct: 61  RINRRAFTHEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 120

Query: 127 RRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 169
           RRRRRTTTSDE SATNQPP FMDRRVEPALFFDFLGVGGGPT
Sbjct: 121 RRRRRTTTSDEHSATNQPPLFMDRRVEPALFFDFLGVGGGPT 162

[Close]

BLAST of CmoCh01G005140 vs. NCBI nr
Match: XP_023523747.1 (transcription factor CSA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 152/162 (93.83%), Postives = 156/162 (96.30%), Query Frame = 0


Query: 7   MNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 66
           MNSGTNAK CARGHWRPAEDAKL+E+VALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP
Sbjct: 1   MNSGTNAKGCARGHWRPAEDAKLKEVVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 60

Query: 67  RINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 126
           RINR AFT EEEERLMQAHRVHGNKWAMIAR+FPGRTDNGVKNHWHVIMARKCRHHF AG
Sbjct: 61  RINRGAFTHEEEERLMQAHRVHGNKWAMIARMFPGRTDNGVKNHWHVIMARKCRHHFAAG 120

Query: 127 RRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 169
           RRRRRTTTSDEDSATN+PP FMDR VEPALFFDFLGVGGGPT
Sbjct: 121 RRRRRTTTSDEDSATNEPPSFMDRSVEPALFFDFLGVGGGPT 162

[Close]

BLAST of CmoCh01G005140 vs. NCBI nr
Match: XP_022997779.1 (transcription factor CSA-like [Cucurbita maxima])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 153/162 (94.44%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 7   MNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 66
           MNSGTNAKACARGHWRPAEDAKL+ELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP
Sbjct: 1   MNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 60

Query: 67  RINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 126
           RINRRAFT EEE RLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHF AG
Sbjct: 61  RINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAG 120

Query: 127 RRRRRTTTSDEDSATNQPPPFMDRRVEPALFFDFLGVGGGPT 169
           RRRRRT TSDEDS TN+PP FMDR VEPALFFDFLGVGGGPT
Sbjct: 121 RRRRRTATSDEDSPTNEPPSFMDRSVEPALFFDFLGVGGGPT 162

[Close]

BLAST of CmoCh01G005140 vs. TAIR 10
Match: AT1G26780.1 (myb domain protein 117 )

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-56
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 8   NSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPR 67
           +S +      RGHWRPAED KL+ELV++YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPR
Sbjct: 88  SSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPR 147

Query: 68  INRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGR 127
           INRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHV+MARK R H  A R
Sbjct: 148 INRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYR 207

Query: 128 RRR 131
           RR+
Sbjct: 208 RRK 210

[Close]

BLAST of CmoCh01G005140 vs. TAIR 10
Match: AT1G26780.2 (myb domain protein 117 )

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-56
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 8   NSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPR 67
           +S +      RGHWRPAED KL+ELV++YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPR
Sbjct: 88  SSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPR 147

Query: 68  INRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGR 127
           INRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHV+MARK R H  A R
Sbjct: 148 INRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYR 207

Query: 128 RRR 131
           RR+
Sbjct: 208 RRK 210

[Close]

BLAST of CmoCh01G005140 vs. TAIR 10
Match: AT1G69560.1 (myb domain protein 105 )

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-55
Identity = 105/141 (74.47%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 10  GTNAKA-CARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 69
           G ++KA  +RGHWRPAED KL+ELVA+YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPRI
Sbjct: 98  GHSSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRI 157

Query: 70  NRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRR 129
           NRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R    +  R
Sbjct: 158 NRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQ-SSSYR 217

Query: 130 RRRTTTSDEDSATNQPPPFMD 150
           RR+T  S +      P  F D
Sbjct: 218 RRKTMVSLKPLINPNPHIFND 237

[Close]

BLAST of CmoCh01G005140 vs. TAIR 10
Match: AT5G17800.1 (myb domain protein 56 )

HSP 1 Score: 201.1 bits (510), Expect = 7.3e-52
Identity = 96/145 (66.21%), Postives = 111/145 (76.55%), Query Frame = 0


Query: 9   SGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 68
           SG N K C+RGHWRP EDAKL+ELVA +GPQNWNLI+  L GRSGKSCRLRWFNQLDPRI
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 69  NRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRR 128
           N+RAFT+EEE RL+ AHR +GNKWA+I+RLFPGRTDN VKNHWHVIMAR+ R      +R
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE----SQR 203

Query: 129 RRRTTTSDEDSATNQPPPFMDRRVE 154
           +R+           QPPP + R  E
Sbjct: 204 QRQ-----------QPPPTLSRDAE 213

[Close]

BLAST of CmoCh01G005140 vs. TAIR 10
Match: AT1G17950.1 (myb domain protein 52 )

HSP 1 Score: 190.7 bits (483), Expect = 9.8e-49
Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 16  CARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQ 75
           C+RGHWRPAED KLRELV  +GP NWN IA+KL GRSGKSCRLRWFNQLDPRINR  FT+
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 76  EEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 121
           EEEERL+ +HR+HGN+W++IAR FPGRTDN VKNHWHVIMAR+ R
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGR 107

The following BLAST results are available for this feature:

BLAST of CmoCh01G005140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5NBM8	2.3e-58	75.91	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
Q9LQX5	4.0e-55	79.67	Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1	[more]
Q9SEZ4	2.6e-54	74.47	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]
Q6R053	1.0e-50	66.21	Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1	[more]
Q6R0C4	1.4e-47	78.10	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]

BLAST of CmoCh01G005140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCC3	8.3e-96	100.00	transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111452673 PE=4...	[more]
A0A6J1KCI9	5.4e-87	94.44	transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111492634 PE=4 S...	[more]
A0A5C7HHP7	5.8e-57	64.67	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017830 PE=4 SV=1	[more]
A0A0E0C0M6	7.6e-57	77.37	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
A0A2U1MHI7	2.2e-56	75.52	Homeodomain-like protein OS=Artemisia annua OX=35608 GN=CTI12_AA380910 PE=4 SV=1	[more]

BLAST of CmoCh01G005140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949264.1	1.7e-95	100.00	transcription factor CSA-like [Cucurbita moschata]	[more]
KAG6607124.1	3.6e-93	97.62	Transcription factor CSA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7036816.1	1.4e-89	98.15	Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_023523747.1	1.1e-86	93.83	transcription factor CSA-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997779.1	1.1e-86	94.44	transcription factor CSA-like [Cucurbita maxima]	[more]

BLAST of CmoCh01G005140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26780.1	2.8e-56	79.67	myb domain protein 117	[more]
AT1G26780.2	2.8e-56	79.67	myb domain protein 117	[more]
AT1G69560.1	1.8e-55	74.47	myb domain protein 105	[more]
AT5G17800.1	7.3e-52	66.21	myb domain protein 56	[more]
AT1G17950.1	9.8e-49	78.10	myb domain protein 52	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 17..66 e-value: 6.1E-14 score: 62.3 coord: 69..117 e-value: 1.5E-12 score: 57.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 18..64 score: 10.41773
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 65..115 score: 9.732599
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 72..112 e-value: 1.29587E-10 score: 51.8074
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 21..62 e-value: 1.74809E-13 score: 59.5114
None	No IPR available	GENE3D	1.10.10.60		coord: 71..143 e-value: 2.8E-18 score: 67.7
None	No IPR available	GENE3D	1.10.10.60		coord: 18..69 e-value: 1.4E-23 score: 84.6
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 21..81 e-value: 5.1E-16 score: 58.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..148
None	No IPR available	PANTHER	PTHR45614:SF175	TRANSCRIPTION FACTOR MYB105	coord: 9..128
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 9..128
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 13..64 score: 20.115017
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 65..119 score: 26.432783
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 18..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G005140.1	CmoCh01G005140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding