CmoCh01G005030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G005030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA helicase
Location	Cmo_Chr01: 2428105 .. 2429831 (-)
RNA-Seq Expression	CmoCh01G005030
Synteny	CmoCh01G005030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCGTAAGCTTCCAAGAGGAGACCAGGACTCTGTATTGGCTTGTGAGAATAATCTTCACTTTTAAAAGTAAGGAGTAACTGACGTGACCATATCGTAAGTAATACAAGAAAATATCGGATCTATCAGAGATGACGAATCTCGATACGAAAACAATTTAAAATATTATTAAAAAGAGAAAATTAAACAGGGATGAGCATTGGGGAGTGTCGGTAGCTGATGGAATCACCCATCAACCGACTTTGCGGCTTATGCAAGGACCCACTGTACCTTATGCAAATAATAATATAAATATTTAATAATAATAATAAAAAGGACAAACTTGTCTTTTGATTTTACCAAAATATATTTTGGTTATTGAAATTTTTTATTTAAAAATAATTTTAAATAGCCATGAAACTTAATTACTTCCCTAACTTCCAAAATTATTCATATTAAATTTAAAACTAAAATTATAATTTAATGAAAATATTTTGAAGCAAATATATTTTTAATTCGAATATTTAGTAAATATCAAAATTACCCTCTTATAATATATATTTATTTATTTATTTGTCTCTCCAATGTTTTGCTCAATATTATCAGACAGGCAGTTGGCTTCATTATTGGGCAGGTAAAGGCCTAGGCTTGGCCTATGGGTCTCAAACTCTATTGGGTTGGAGCCAGACGGACCTAACCCATAATTTAATGGGCATAGTTCGATTGAAAATTGTGACAGGTAACTACAAATGAATACGGATAATAAAAAATGATTAAATTTTTTCAATATTTAAATTTATGGCTATCATATGTTTGGAGAGTCGAGTGAATAATCCCATGTTCCATTTTTAAGAAACTCATCAACGATATGGTATGGAATATGACCCTTAAGAACAAACTATCTTAGAGTGGTTTTTTATTCGAACATAGGCAGCTTGAGACCATTACTAGCAAATATTGTCCGTTTTAGCCTGTAAGGTATTGTCGTGAGCCTCACAGTTTTAAAACGCGTAGACTACGAAGAGGTTTCCATACCCTTATAAATAAAGTTTCGTTTCTTCTCCAATCGATGTAGGATCTCGCAACTTACCACTAGCAAATATTGTCTGTTTTAACCTGTTACGTATAACTGTCAATCTCACAGTTTTATAACATGGGGAAGATGTTTCCACACCCTATAAGAAATGTTTTGTTCTCTCTCCAACCAATGTGAGATCTCATACTGTAACTCAATTCGTAATGTCTTAAATGACCTTGATTAGAGACTTCTCGACCATAAAAACTAAAAAGTATCTTAGAAATTAATTAACCTTCATTNTGGGTCCAACAAATAGTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGTACATGCCAATCGATATCATGAATTTATGTTTGTAGTTTCTTGTTCTCTTGATTCTATATTATCATGGAGAGACTAAATCATGGTCATGGATATCTTTTGAATCCCTTCTTTTGTCTTCTTATGCAGGTTTATATTGTGGTCCCCTGAGACTGTTGGCCTGGGAAGTCTCAAAGCGGTTGAATAAGGCTAAAATCCCTTGTGATCTGATCACTGGACAAGAAAGAGAGGAAGTTGATGGTGCAAAACATAAGGCTGTTACTGTTGAGATGGCTGATGTAACCTCCAACTACAGTTGTGCTGTTATCGATGAAATTCAGGCATGTTCACCACAGTTCCCTCCTAGGAATTTGAATCACCATTGA

mRNA sequence

ATGAAACCTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGTTTATATTGTGGTCCCCTGAGACTGTTGGCCTGGGAAGTCTCAAAGCGGTTGAATAAGGCTAAAATCCCTTGTGATCTGATCACTGGACAAGAAAGAGAGGAAGTTGATGGTGCAAAACATAAGGCTGTTACTGTTGAGATGGCTGATGTAACCTCCAACTACAGTTGTGCTGTTATCGATGAAATTCAGGCATGTTCACCACAGTTCCCTCCTAGGAATTTGAATCACCATTGA

Coding sequence (CDS)

ATGAAACCTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGTTTATATTGTGGTCCCCTGAGACTGTTGGCCTGGGAAGTCTCAAAGCGGTTGAATAAGGCTAAAATCCCTTGTGATCTGATCACTGGACAAGAAAGAGAGGAAGTTGATGGTGCAAAACATAAGGCTGTTACTGTTGAGATGGCTGATGTAACCTCCAACTACAGTTGTGCTGTTATCGATGAAATTCAGGCATGTTCACCACAGTTCCCTCCTAGGAATTTGAATCACCATTGA

Protein sequence

MKPGKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQACSPQFPPRNLNHH

Homology

[Close]

BLAST of CmoCh01G005030 vs. ExPASy Swiss-Prot
Match: Q10D00 (ATP-dependent RNA helicase SUV3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SUV3 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-31
Identity = 62/79 (78.48%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLE+S SG+YCGPLRLLA EV++RLNKA +PC+LITGQEREE++GAKH +VT
Sbjct: 90  GKTHNALKRLEASSSGVYCGPLRLLAREVAQRLNKANVPCNLITGQEREEIEGAKHSSVT 149

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMAD+T+ Y CAVIDEIQ
Sbjct: 150 VEMADMTTEYQCAVIDEIQ 168

[Close]

BLAST of CmoCh01G005030 vs. ExPASy Swiss-Prot
Match: Q9SMX1 (DExH-box ATP-dependent RNA helicase DExH16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SUV3 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-31
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKT++ALK LE S SG+YCGPLRLLAWEV+KRLNKA +PCDLITGQE++ V+GA HKAVT
Sbjct: 101 GKTYSALKHLEQSSSGVYCGPLRLLAWEVAKRLNKANVPCDLITGQEKDLVEGATHKAVT 160

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTS Y CA+IDEIQ
Sbjct: 161 VEMADVTSVYDCAIIDEIQ 179

[Close]

BLAST of CmoCh01G005030 vs. ExPASy Swiss-Prot
Match: Q5ZJT0 (ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus OX=9031 GN=SUPV3L1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-17
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQER----EEVDGAKH 63
           GKT++A++R  S+ SG+YCGPL+LLA E+ ++ N A +PCDL+TG+ER    E+   A H
Sbjct: 200 GKTYHAIQRFLSAKSGIYCGPLKLLAHEIFQKSNAANVPCDLVTGEERVYASEDAKQASH 259

Query: 64  KAVTVEMADVTSNYSCAVIDEIQ 83
            A T+EM    + Y  AVIDEIQ
Sbjct: 260 IACTIEMCSTNTPYEVAVIDEIQ 282

[Close]

BLAST of CmoCh01G005030 vs. ExPASy Swiss-Prot
Match: A4IG62 (ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio OX=7955 GN=supv3l1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.2e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVD----GAKH 63
           GKT++A+KR   + SG+YCGPL+LLA E+ ++ N A +PCDL+TG+ER  VD     + H
Sbjct: 210 GKTYHAIKRYLEAKSGVYCGPLKLLAHEIYEKSNAAGVPCDLVTGEERIFVDPEGKPSGH 269

Query: 64  KAVTVEMADVTSNYSCAVIDEIQ 83
            A T+EM  VT+ Y  AVIDEIQ
Sbjct: 270 IASTIEMCSVTTPYEVAVIDEIQ 292

[Close]

BLAST of CmoCh01G005030 vs. ExPASy Swiss-Prot
Match: Q8IYB8 (ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens OX=9606 GN=SUPV3L1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.4e-17
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVD----GAKH 63
           GKT++A+++  S+ SG+YCGPL+LLA E+ ++ N A +PCDL+TG+ER  V      A H
Sbjct: 212 GKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASH 271

Query: 64  KAVTVEMADVTSNYSCAVIDEIQ 83
            + TVEM  VT+ Y  AVIDEIQ
Sbjct: 272 VSCTVEMCSVTTPYEVAVIDEIQ 294

[Close]

BLAST of CmoCh01G005030 vs. ExPASy TrEMBL
Match: A0A6J1IWX3 (RNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111479223 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. ExPASy TrEMBL
Match: A0A6J1IWJ9 (RNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111479223 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. ExPASy TrEMBL
Match: A0A6J1GV03 (RNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111457680 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. ExPASy TrEMBL
Match: A0A6J1GXA9 (RNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111457680 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. ExPASy TrEMBL
Match: A0A7N2LVS7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.7e-35
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALK+L+SS SG+YCGPLRLLAWEV+KRLNKAK+PCDLITGQEREEVDGAKHKAVT
Sbjct: 90  GKTHNALKQLQSSSSGIYCGPLRLLAWEVAKRLNKAKVPCDLITGQEREEVDGAKHKAVT 149

Query: 64  VEMADVTSNYSCAVIDEIQAC 85
           VEMADVTS+Y CAVIDEIQAC
Sbjct: 150 VEMADVTSDYQCAVIDEIQAC 170

[Close]

BLAST of CmoCh01G005030 vs. NCBI nr
Match: XP_022955799.1 (DExH-box ATP-dependent RNA helicase DExH16, mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. NCBI nr
Match: XP_022979544.1 (ATP-dependent RNA helicase SUV3, mitochondrial isoform X2 [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. NCBI nr
Match: XP_022979543.1 (ATP-dependent RNA helicase SUV3, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. NCBI nr
Match: KAG6582314.1 (ATP-dependent RNA helicase SUV3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. NCBI nr
Match: KAG7018725.1 (ATP-dependent RNA helicase SUV3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT
Sbjct: 85  GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 144

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTSNYSCAVIDEIQ
Sbjct: 145 VEMADVTSNYSCAVIDEIQ 163

[Close]

BLAST of CmoCh01G005030 vs. TAIR 10
Match: AT4G14790.1 (ATP-dependent RNA helicase, mitochondrial (SUV3) )

HSP 1 Score: 134.0 bits (336), Expect = 6.2e-32
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKT++ALK LE S SG+YCGPLRLLAWEV+KRLNKA +PCDLITGQE++ V+GA HKAVT
Sbjct: 101 GKTYSALKHLEQSSSGVYCGPLRLLAWEVAKRLNKANVPCDLITGQEKDLVEGATHKAVT 160

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEMADVTS Y CA+IDEIQ
Sbjct: 161 VEMADVTSVYDCAIIDEIQ 179

[Close]

BLAST of CmoCh01G005030 vs. TAIR 10
Match: AT5G39840.1 (ATP-dependent RNA helicase, mitochondrial, putative )

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 4   GKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVT 63
           GKT+NAL+R   + +GLYC PLRLLA EV  ++N   I C L+TGQE++ V  A H + T
Sbjct: 286 GKTYNALQRFMEAKNGLYCSPLRLLAMEVFDKVNALGIYCSLLTGQEKKYVPFANHVSCT 345

Query: 64  VEMADVTSNYSCAVIDEIQ 83
           VEM      Y  AV+DEIQ
Sbjct: 346 VEMVSTDELYEVAVLDEIQ 364

The following BLAST results are available for this feature:

BLAST of CmoCh01G005030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10D00	3.9e-31	78.48	ATP-dependent RNA helicase SUV3, mitochondrial OS=Oryza sativa subsp. japonica O...	[more]
Q9SMX1	8.8e-31	78.48	DExH-box ATP-dependent RNA helicase DExH16, mitochondrial OS=Arabidopsis thalian...	[more]
Q5ZJT0	3.2e-17	50.60	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus OX=9031 GN=SU...	[more]
A4IG62	7.2e-17	53.01	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio OX=7955 GN=supv...	[more]
Q8IYB8	9.4e-17	51.81	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens OX=9606 GN=SUP...	[more]

BLAST of CmoCh01G005030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IWX3	5.0e-37	100.00	RNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111479223 PE=4 SV=1	[more]
A0A6J1IWJ9	5.0e-37	100.00	RNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111479223 PE=4 SV=1	[more]
A0A6J1GV03	5.0e-37	100.00	RNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111457680 PE=4 SV=1	[more]
A0A6J1GXA9	5.0e-37	100.00	RNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111457680 PE=4 SV=1	[more]
A0A7N2LVS7	2.7e-35	90.12	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmoCh01G005030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955799.1	1.0e-36	100.00	DExH-box ATP-dependent RNA helicase DExH16, mitochondrial isoform X2 [Cucurbita ...	[more]
XP_022979544.1	1.0e-36	100.00	ATP-dependent RNA helicase SUV3, mitochondrial isoform X2 [Cucurbita maxima]	[more]
XP_022979543.1	1.0e-36	100.00	ATP-dependent RNA helicase SUV3, mitochondrial isoform X1 [Cucurbita maxima]	[more]
KAG6582314.1	1.0e-36	100.00	ATP-dependent RNA helicase SUV3, mitochondrial, partial [Cucurbita argyrosperma ...	[more]
KAG7018725.1	1.0e-36	100.00	ATP-dependent RNA helicase SUV3, mitochondrial [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of CmoCh01G005030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14790.1	6.2e-32	78.48	ATP-dependent RNA helicase, mitochondrial (SUV3)	[more]
AT5G39840.1	1.6e-16	51.90	ATP-dependent RNA helicase, mitochondrial, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 3..87 e-value: 2.0E-23 score: 84.3
None	No IPR available	PANTHER	PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	coord: 2..82
None	No IPR available	PANTHER	PTHR12131:SF2	DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH16, MITOCHONDRIAL	coord: 2..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G005030.1	CmoCh01G005030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0000965	mitochondrial RNA 3'-end processing
biological_process	GO:0010929	positive regulation of auxin mediated signaling pathway
biological_process	GO:0080038	positive regulation of cytokinin-activated signaling pathway
biological_process	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway
biological_process	GO:1901002	positive regulation of response to salt stress
biological_process	GO:1902584	positive regulation of response to water deprivation
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0045025	mitochondrial degradosome
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0003724	RNA helicase activity