CmoCh01G004870 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA Homology
BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30 Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = 0
BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29 Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 5.2e-14 Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 0
BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 6.8e-14 Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 0
BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A6J5UGL2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13 Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 0
BLAST of CmoCh01G004870 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 198.4 bits (503), Expect = 3.3e-47 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of CmoCh01G004870 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 181.0 bits (458), Expect = 5.5e-42 Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0
BLAST of CmoCh01G004870 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 141.0 bits (354), Expect = 6.3e-30 Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = 0
BLAST of CmoCh01G004870 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa]) HSP 1 Score: 139.0 bits (349), Expect = 2.4e-29 Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of CmoCh01G004870 vs. NCBI nr
Match: XP_041003862.1 (uncharacterized protein LOC121249205 [Juglans microcarpa x Juglans regia]) HSP 1 Score: 87.8 bits (216), Expect = 6.3e-14 Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 0
BLAST of CmoCh01G004870 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08 Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0
BLAST of CmoCh01G004870 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 5.5e-08 Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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