CmoCh01G004870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G004870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTranscription factor UPBEAT1-like
LocationCmo_Chr01: 2335149 .. 2335481 (-)
RNA-Seq ExpressionCmoCh01G004870
SyntenyCmoCh01G004870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

mRNA sequence

ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

Coding sequence (CDS)

ATGAGTTCGATCGCAAAGAAACATAGAATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTTTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

Protein sequence

MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA
Homology
BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = 0

Query: 1   MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPT 60
           MSSI KKHR+ WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  QNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
           +++ EG  RR+E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 61  RSDEEG-VRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29
Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPT 60
           MS I KKHR+ WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP+
Sbjct: 1   MSPIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  QNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
           +++ EG  RR+E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 61  RSDEEG-VRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-14
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 0

Query: 1   MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPT 60
           MSS  K  + + +++ RR     +  SR   ARR   NGG  CSS VS +LEAL+ LIP 
Sbjct: 1   MSSTTKDQKTNVRRTRRRG---RKTRSRDCVARRSCNNGGGTCSSKVSGKLEALKKLIP- 60

Query: 61  QNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVS 110
               EG   ++++LFQ+TADYIVLL+ QV +LQ+LIEFYGS + E+AVS
Sbjct: 61  --GHEGEIVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.8e-14
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 1   MSSIAKKH----RMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQS 60
           MSS A+K     R + ++ TRR   R R  +R  RARR   NGG+ C+  VS +LEAL++
Sbjct: 1   MSSTAEKRKALLRRTRRKLTRRTSTRRRLQARPCRARRSFNNGGRTCAK-VSDKLEALKN 60

Query: 61  LIPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAV 109
           LIP  N   G   + ++LF+ETA+YIVLL+ QV +LQRL+EFYGS    N V
Sbjct: 61  LIPAHN---GETVKPDQLFKETAEYIVLLRTQVVILQRLVEFYGSSGMNNVV 108

BLAST of CmoCh01G004870 vs. ExPASy TrEMBL
Match: A0A6J5UGL2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 0

Query: 7   KHRMSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQN 66
           K  ++ ++ TRR   R R GSR   A RR   NGG   K  S  VSA+LE L+SLI   +
Sbjct: 9   KASLAGRRRTRRISSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLISPSH 68

Query: 67  NGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
            G+    +++ELFQETADYIVLL+ QV +LQRL+E YGS E+EN  +A
Sbjct: 69  AGK--TLKADELFQETADYIVLLRTQVVILQRLVELYGSSEKENIAAA 114

BLAST of CmoCh01G004870 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.4 bits (503), Expect = 3.3e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 10  MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 69
           MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR
Sbjct: 1   MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60

Query: 70  RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
           RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA
Sbjct: 61  RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101

BLAST of CmoCh01G004870 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.0 bits (458), Expect = 5.5e-42
Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0

Query: 10  MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 69
           MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR
Sbjct: 1   MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60

Query: 70  RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
           RSEELFQETADYI      VFVLQRLIEFYGSDERENAVSA
Sbjct: 61  RSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA 95

BLAST of CmoCh01G004870 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-30
Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = 0

Query: 1   MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPT 60
           MSSI KKHR+ WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  QNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
           +++ EG  RR+E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 61  RSDEEG-VRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

BLAST of CmoCh01G004870 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-29
Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 1   MSSIAKKHRMSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPT 60
           MS I KKHR+ WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP+
Sbjct: 1   MSPIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  QNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 111
           +++ EG  RR+E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 61  RSDEEG-VRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

BLAST of CmoCh01G004870 vs. NCBI nr
Match: XP_041003862.1 (uncharacterized protein LOC121249205 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-14
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 1   MSSIAKKHRMS--WKQSTRRAVLRSRYGSRILRARR-IHKNGGKACSSDVSARLEALQSL 60
           MSS ++KH+ S  + + TRR   R R  +R  R RR    NGG+ C S++SA+LEAL++L
Sbjct: 1   MSSTSEKHQSSKTFLRRTRRTNSRRRLHARSYRDRRNCFNNGGRTC-SEISAKLEALKNL 60

Query: 61  IPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAV 109
           IP  +NG     + ++LFQETA+YI+LL+ QV +LQRL+EFYGS  RE  V
Sbjct: 61  IPVGSNG-AEIIKPDQLFQETAEYILLLRTQVVMLQRLLEFYGSSGRETVV 109

BLAST of CmoCh01G004870 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 13  KQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSE 72
           K  T R   R+   SR         NG       V  +L AL+SL+P   N  G    +E
Sbjct: 5   KTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGG--GETE 64

Query: 73  ELFQETADYIVLLKNQVFVLQRLIEFY--GSDERENAV 109
           ELFQETA+YIV L+ QV VL++LIE Y   SD++++ V
Sbjct: 65  ELFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDVV 100

BLAST of CmoCh01G004870 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-08
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 0

Query: 22  RSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRR----------- 81
           RSR G R  +     +  G       S +L+AL+SL+P  +      R+           
Sbjct: 8   RSRGGRRTSKKFGNRRTSG---GEKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVG 67

Query: 82  -SEELFQETADYIVLLKNQVFVLQRLIEFYGSDERE 106
            +E+LFQETADYIV L+ QV VLQ+LIE YGS +++
Sbjct: 68  ETEQLFQETADYIVRLRGQVVVLQKLIEIYGSSDQK 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BZU83.0e-3069.09Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UT081.2e-2968.18Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A2P5AW875.2e-1449.54Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=Pan... [more]
A0A5N6QW576.8e-1448.21Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1[more]
A0A6J5UGL22.0e-1350.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 S... [more]
Match NameE-valueIdentityDescription
KAG6607102.13.3e-47100.00hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7036793.15.5e-4294.06hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyro... [more]
TYK04615.16.3e-3069.09transcription factor UPBEAT1-like [Cucumis melo var. makuwa][more]
KAA0056655.12.4e-2968.18transcription factor UPBEAT1-like [Cucumis melo var. makuwa][more]
XP_041003862.16.3e-1449.55uncharacterized protein LOC121249205 [Juglans microcarpa x Juglans regia][more]
Match NameE-valueIdentityDescription
AT3G29370.12.5e-0840.82unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G39240.15.5e-0838.54unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124:SF70SUBFAMILY NOT NAMEDcoord: 15..106
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 15..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G004870.1CmoCh01G004870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated