CmoCh01G004390 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G004390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor TCP13-like
Location	Cmo_Chr01: 2133762 .. 2135106 (-)
RNA-Seq Expression	CmoCh01G004390
Synteny	CmoCh01G004390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCTTTGCCCTTCCATAAAGAAACCCAACATTCCACAGCTACCTAGGCTTGCAGTTCATCAATTGTGTCTCCAAATTTCAAGCCTTCCTAGAAGCTCAACCACATAAAAGGGTTCACTGCTAATGCGTAAGTGATTGACCCAATTCCTTATGTTCTTCAGCTTTATCTGATTCGATCTCGAAAATCACTAAAGAAATTGGCAGAATTAGTTCAATCAGTACAAAAAGATTGAAACTTTTAAGAAAATTTGTGTTTTTTTCAGCTCATATCAAACAAATCCTTATGGGGTTTGTAATAATGTTTTCAAGAAATTTTATTGTCCTACGAATGATTTCATGAAATGGGTTCTTCTTGATCTTAGGGTTTTTGAGGGTTTTGTGTATTAATTAACAAAATGGTACATATTCTCTTCATAATCTAATGCTCGGCATAGCAGCTTCATCGAGCTCATCGACGGTGACACCATGGCTTAGGCTAAAGGATCCGAGGATTGTGCGTGTGTCGCGAGCATTCGGGGGCAAGGATCGACACAGCAAAGTTTATACCATAAGAGGGCTGCGCGACAGGCGTATTAGGCTTTCGATATCGACCGCGATTCAGCTTTACGATCTTCAAGATCGCCTCGGTCTTAACCAGCCGAGCAAGGTGGTGGACTGGTTGCTCAACGCCGCCAAGGATGAAATTGACGAGCTCCCTCCATTGCCTATCCCTTCCGTGAGCCTCGGCCTTGACTACCAATCCATGCTACTACCTCATGCCCAGACACGCCCTCATAGGTCGGAGTTCAAAATCGGTAAGGAAGCCGAGGACGGTGTCGCGGCCACCGACGAACAAAATGAGCTCAAACCCAATTCTAATCCCTCTCAAGCTTCTTCATTCTCAATGCTTTTGAACAATGTGGGTGCCATTCCATTTGGGTATCATCATTGGGAGGCATCAACACCAACACCATCAAATCTTCCATTCTTTACATCTCAAGGTGAGGATCTTCATAACTTCATTTTGAACCATTAATTTTCACTTTGCCTCACAAATTCGTTTCTCAAGAGAAGAATAATAACAATGGAGATCGAGTTCATAGCAAGAACAACAATGGAAAAGCTATTCTACTACTTAATCCTCTATTCCATCCTTTCAATTGCTACTTTTGATTGTTTTTTTTTTCTCTTGTTATTTGTTTTGTTTTGTTTGGTGATCATAGTCTATTATTGGATTGAGTTTGAGATTTAGCCTTCCCCGACCTCGATCACCGTTTTCAATGACCTTGGTAGCTAATTACACGATAACTCACCCAACGTGTACTTACCACAAATTCATTTTATAACATGTCAAATCAATTCATG

mRNA sequence

AAAGCTTTGCCCTTCCATAAAGAAACCCAACATTCCACAGCTACCTAGGCTTGCAGTTCATCAATTGTGTCTCCAAATTTCAAGCCTTCCTAGAAGCTCAACCACATAAAAGGGTTCACTGCTAATGCCTTCATCGAGCTCATCGACGGTGACACCATGGCTTAGGCTAAAGGATCCGAGGATTGTGCGTGTGTCGCGAGCATTCGGGGGCAAGGATCGACACAGCAAAGTTTATACCATAAGAGGGCTGCGCGACAGGCGTATTAGGCTTTCGATATCGACCGCGATTCAGCTTTACGATCTTCAAGATCGCCTCGGTCTTAACCAGCCGAGCAAGGTGGTGGACTGGTTGCTCAACGCCGCCAAGGATGAAATTGACGAGCTCCCTCCATTGCCTATCCCTTCCGTGAGCCTCGGCCTTGACTACCAATCCATGCTACTACCTCATGCCCAGACACGCCCTCATAGGTCGGAGTTCAAAATCGGTAAGGAAGCCGAGGACGGTGTCGCGGCCACCGACGAACAAAATGAGCTCAAACCCAATTCTAATCCCTCTCAAGCTTCTTCATTCTCAATGCTTTTGAACAATGTGGGTGCCATTCCATTTGGGTATCATCATTGGGAGGCATCAACACCAACACCATCAAATCTTCCATTCTTTACATCTCAAGGTGAGGATCTTCATAACTTCATTTTGAACCATTAATTTTCACTTTGCCTCACAAATTCGTTTCTCAAGAGAAGAATAATAACAATGGAGATCGAGTTCATAGCAAGAACAACAATGGAAAAGCTATTCTACTACTTAATCCTCTATTCCATCCTTTCAATTGCTACTTTTGATTGTTTTTTTTTTCTCTTGTTATTTGTTTTGTTTTGTTTGGTGATCATAGTCTATTATTGGATTGAGTTTGAGATTTAGCCTTCCCCGACCTCGATCACCGTTTTCAATGACCTTGGTAGCTAATTACACGATAACTCACCCAACGTGTACTTACCACAAATTCATTTTATAACATGTCAAATCAATTCATG

Coding sequence (CDS)

ATGCCTTCATCGAGCTCATCGACGGTGACACCATGGCTTAGGCTAAAGGATCCGAGGATTGTGCGTGTGTCGCGAGCATTCGGGGGCAAGGATCGACACAGCAAAGTTTATACCATAAGAGGGCTGCGCGACAGGCGTATTAGGCTTTCGATATCGACCGCGATTCAGCTTTACGATCTTCAAGATCGCCTCGGTCTTAACCAGCCGAGCAAGGTGGTGGACTGGTTGCTCAACGCCGCCAAGGATGAAATTGACGAGCTCCCTCCATTGCCTATCCCTTCCGTGAGCCTCGGCCTTGACTACCAATCCATGCTACTACCTCATGCCCAGACACGCCCTCATAGGTCGGAGTTCAAAATCGGTAAGGAAGCCGAGGACGGTGTCGCGGCCACCGACGAACAAAATGAGCTCAAACCCAATTCTAATCCCTCTCAAGCTTCTTCATTCTCAATGCTTTTGAACAATGTGGGTGCCATTCCATTTGGGTATCATCATTGGGAGGCATCAACACCAACACCATCAAATCTTCCATTCTTTACATCTCAAGGTGAGGATCTTCATAACTTCATTTTGAACCATTAA

Protein sequence

MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFTSQGEDLHNFILNH

Homology

[Close]

BLAST of CmoCh01G004390 vs. ExPASy Swiss-Prot
Match: Q9S7W5 (Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.3e-36
Identity = 79/145 (54.48%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 2   PSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQ 61
           P+S SS+ + W++ KDPRIVRVSRAFGGKDRHSKV T+RGLRDRR+RLS+ TAIQLYDLQ
Sbjct: 47  PTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQ 106

Query: 62  DRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSE---- 121
           +RLG++QPSK VDWLL+AAK+EIDELPPLPI   +  +        +   RP +      
Sbjct: 107 ERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSIFNHHQSFLNLGQRPGQDPTQLG 166

Query: 122 FKIGKEAEDGVAATDEQNELKPNSN 143
           FKI    +     + E+N+ +   N
Sbjct: 167 FKINGCVQKSTTTSREENDREKGEN 191

[Close]

BLAST of CmoCh01G004390 vs. ExPASy Swiss-Prot
Match: Q9FME3 (Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.3e-32
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 2   PSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQ 61
           PSS SS+       ++PRIVRVSR FGGKDRHSKV T+RGLRDRRIRLS+ TAIQLYDLQ
Sbjct: 36  PSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQ 95

Query: 62  DRLGLNQPSKVVDWLLNAAKDEIDELPPLPIP 94
           DRLGL+QPSKV+DWLL AAKD++D+LPPL  P
Sbjct: 96  DRLGLSQPSKVIDWLLEAAKDDVDKLPPLQFP 127

[Close]

BLAST of CmoCh01G004390 vs. ExPASy Swiss-Prot
Match: Q9LEZ9 (Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-29
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 4  SSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQDR 63
          SS S +T   R  +PRIVRVSRAFGGKDRHSKV T+RGLRDRRIRLS+ TAIQ+YDLQ+R
Sbjct: 10 SSLSLLTQ--RWNNPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQER 69

Query: 64 LGLNQPSKVVDWLLNAAKDEIDELPPLPIP 94
          LGL+QPSKV+DWLL  AK+++D LPPL  P
Sbjct: 70 LGLSQPSKVIDWLLEVAKNDVDLLPPLQFP 97

[Close]

BLAST of CmoCh01G004390 vs. ExPASy Swiss-Prot
Match: Q10CE8 (Transcription factor PCF6 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF6 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-24
Identity = 65/140 (46.43%), Postives = 91/140 (65.00%), Query Frame = 0


Query: 19  RIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQDRLGLNQPSKVVDWLLN 78
           RI RV RA GGKDRHSKVYT +G+RDRR+RLS++TAIQ YDLQDRLG +QPSK ++WL+N
Sbjct: 43  RIYRV-RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLIN 102

Query: 79  AAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGKEAEDGVAATDE----- 138
           AA   ID LP L  P+    + + +      + R  + + ++  ++  G ++T E     
Sbjct: 103 AASPAIDTLPSLD-PAAFAAIPHAAADAAPTRRRSQQQQQQLSNKS--GCSSTSETSKGS 162

Query: 139 QNELKPNSNPSQASSFSMLL 154
             E+   S P+QA+SF+ LL
Sbjct: 163 DKEVTVASAPAQAASFTELL 178

[Close]

BLAST of CmoCh01G004390 vs. ExPASy Swiss-Prot
Match: Q9C758 (Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.5e-24
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 19  RIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQDRLGLNQPSKVVDWLLN 78
           RI+RVSRA GGKDRHSKV T +GLRDRRIRLS++TAIQ YDLQDRLG +QPSK V+WL+N
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 79  AAKDEIDELPPL 91
           AA D I +LP L
Sbjct: 100 AASDSITDLPLL 111

[Close]

BLAST of CmoCh01G004390 vs. ExPASy TrEMBL
Match: A0A6J1GA18 (transcription factor TCP13-like OS=Cucurbita moschata OX=3662 GN=LOC111452320 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.3e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60
           MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL
Sbjct: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60

Query: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120
           QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI
Sbjct: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120

Query: 121 GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT 180
           GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT
Sbjct: 121 GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT 180

Query: 181 SQGEDLHNFILNH 194
           SQGEDLHNFILNH
Sbjct: 181 SQGEDLHNFILNH 193

[Close]

BLAST of CmoCh01G004390 vs. ExPASy TrEMBL
Match: A0A6J1KBN8 (transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111492845 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 186/193 (96.37%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60
           MPSSSSSTVTPWLRLKDPRIV VSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL
Sbjct: 1   MPSSSSSTVTPWLRLKDPRIVCVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60

Query: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120
           QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI
Sbjct: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120

Query: 121 GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT 180
           GK AEDGVAAT EQNELKPNSNPSQ SS SMLLNNVGAIPFGYHHWEA TPTP+NLPFFT
Sbjct: 121 GKVAEDGVAATAEQNELKPNSNPSQTSSSSMLLNNVGAIPFGYHHWEAPTPTPTNLPFFT 180

Query: 181 SQGEDLHNFILNH 194
           SQGEDLHNFILNH
Sbjct: 181 SQGEDLHNFILNH 193

[Close]

BLAST of CmoCh01G004390 vs. ExPASy TrEMBL
Match: A0A6J1GTT6 (transcription factor TCP17-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111457473 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.6e-66
Identity = 147/203 (72.41%), Postives = 156/203 (76.85%), Query Frame = 0


Query: 1   MPSSSSST--VTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLY 60
           MPSSSSS    TPWLRLKDPRIVRVSRAFGGKDRHSKV TIRGLRDRR+RLS+STAIQLY
Sbjct: 1   MPSSSSSAALATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLY 60

Query: 61  DLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEF 120
           DLQDRLGLNQPSKVVDWLLN AKDEIDELPPLPIPS SLGL YQSML PH     HRSEF
Sbjct: 61  DLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHI---AHRSEF 120

Query: 121 KIGKEAED-GVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPS--- 180
           KI    +   +   DEQ + K NSNP   SSFS LLNNV A PFG+ HW+ S+ + S   
Sbjct: 121 KINSGIDKVEIDDDDEQKQHKSNSNP---SSFSALLNNVSAPPFGF-HWDPSSSSSSSSS 180

Query: 181 ----NLPFFTSQGEDLHNFILNH 194
               NLPFFTSQ EDLHNF  NH
Sbjct: 181 SSTTNLPFFTSQAEDLHNF--NH 194

[Close]

BLAST of CmoCh01G004390 vs. ExPASy TrEMBL
Match: A0A6J1IU92 (transcription factor TCP13-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111479977 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.9e-66
Identity = 146/201 (72.64%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 1   MPSSSSS----TVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQ 60
           MPSSSSS      TPWLRLKDPRIVRVSRAFGGKDRHSKV TIRGLRDRR+RLS+STAIQ
Sbjct: 1   MPSSSSSAAAAVATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQ 60

Query: 61  LYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRS 120
           LYDLQDRLGLNQPSKVVDWLLN AKDEIDELPPLPIPS SLGL YQSML PH     HR 
Sbjct: 61  LYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHT---AHRP 120

Query: 121 EFKIGKEAED-GVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPS- 180
           EFKI    +   +   DEQ + K NSNP   SSFS LLNNV A PFG+ HW+ S+ + S 
Sbjct: 121 EFKINSGIDKVEIDDDDEQKQHKSNSNP---SSFSALLNNVSAPPFGF-HWDPSSSSSSS 180

Query: 181 --NLPFFTSQGEDLHNFILNH 194
             NLPFFTSQ EDLHNF  NH
Sbjct: 181 TTNLPFFTSQAEDLHNF--NH 192

[Close]

BLAST of CmoCh01G004390 vs. ExPASy TrEMBL
Match: A0A6J1GV58 (transcription factor TCP17-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457473 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65
Identity = 143/199 (71.86%), Postives = 154/199 (77.39%), Query Frame = 0


Query: 3   SSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQD 62
           SSS++  TPWLRLKDPRIVRVSRAFGGKDRHSKV TIRGLRDRR+RLS+STAIQLYDLQD
Sbjct: 28  SSSAALATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQD 87

Query: 63  RLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGK 122
           RLGLNQPSKVVDWLLN AKDEIDELPPLPIPS SLGL YQSML PH     HRSEFKI  
Sbjct: 88  RLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHI---AHRSEFKINS 147

Query: 123 EAED-GVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPS------- 182
             +   +   DEQ + K NSNP   SSFS LLNNV A PFG+ HW+ S+ + S       
Sbjct: 148 GIDKVEIDDDDEQKQHKSNSNP---SSFSALLNNVSAPPFGF-HWDPSSSSSSSSSSSTT 207

Query: 183 NLPFFTSQGEDLHNFILNH 194
           NLPFFTSQ EDLHNF  NH
Sbjct: 208 NLPFFTSQAEDLHNF--NH 217

[Close]

BLAST of CmoCh01G004390 vs. NCBI nr
Match: XP_022948741.1 (transcription factor TCP13-like [Cucurbita moschata])

HSP 1 Score: 392.1 bits (1006), Expect = 2.7e-105
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60
           MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL
Sbjct: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60

Query: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120
           QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI
Sbjct: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120

Query: 121 GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT 180
           GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT
Sbjct: 121 GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT 180

Query: 181 SQGEDLHNFILNH 194
           SQGEDLHNFILNH
Sbjct: 181 SQGEDLHNFILNH 193

[Close]

BLAST of CmoCh01G004390 vs. NCBI nr
Match: KAG6607063.1 (Transcription factor TCP13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 391.0 bits (1003), Expect = 6.1e-105
Identity = 192/193 (99.48%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60
           MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL
Sbjct: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60

Query: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120
           QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPS+SLGLDYQSMLLPHAQTRPHRSEFKI
Sbjct: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSMSLGLDYQSMLLPHAQTRPHRSEFKI 120

Query: 121 GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT 180
           GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT
Sbjct: 121 GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT 180

Query: 181 SQGEDLHNFILNH 194
           SQGEDLHNFILNH
Sbjct: 181 SQGEDLHNFILNH 193

[Close]

BLAST of CmoCh01G004390 vs. NCBI nr
Match: XP_023525489.1 (transcription factor TCP13-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.9 bits (995), Expect = 5.2e-104
Identity = 191/193 (98.96%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60
           MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL
Sbjct: 1   MPSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDL 60

Query: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120
           QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI
Sbjct: 61  QDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKI 120

Query: 121 GKEAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFT 180
           GKEAEDGV ATDEQNELKPNSNPSQASSFSMLLN VGAIPFGYHHWEASTPTPSNLPFFT
Sbjct: 121 GKEAEDGVPATDEQNELKPNSNPSQASSFSMLLNTVGAIPFGYHHWEASTPTPSNLPFFT 180

Query: 181 SQGEDLHNFILNH 194
           SQGEDLHNFILNH
Sbjct: 181 SQGEDLHNFILNH 193

[Close]

BLAST of CmoCh01G004390 vs. NCBI nr
Match: KAG7011064.1 (Transcription factor TCP13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387.9 bits (995), Expect = 5.2e-104
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 3   SSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQD 62
           SSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQD
Sbjct: 7   SSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQD 66

Query: 63  RLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGK 122
           RLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGK
Sbjct: 67  RLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGK 126

Query: 123 EAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFTSQ 182
           EAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFTSQ
Sbjct: 127 EAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFTSQ 186

Query: 183 GEDLHNFILNH 194
           GEDLHNFILNH
Sbjct: 187 GEDLHNFILNH 197

[Close]

BLAST of CmoCh01G004390 vs. NCBI nr
Match: XP_023525488.1 (transcription factor TCP13-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.6 bits (984), Expect = 9.7e-103
Identity = 189/191 (98.95%), Postives = 189/191 (98.95%), Query Frame = 0


Query: 3   SSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQD 62
           SSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQD
Sbjct: 4   SSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQD 63

Query: 63  RLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGK 122
           RLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGK
Sbjct: 64  RLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSEFKIGK 123

Query: 123 EAEDGVAATDEQNELKPNSNPSQASSFSMLLNNVGAIPFGYHHWEASTPTPSNLPFFTSQ 182
           EAEDGV ATDEQNELKPNSNPSQASSFSMLLN VGAIPFGYHHWEASTPTPSNLPFFTSQ
Sbjct: 124 EAEDGVPATDEQNELKPNSNPSQASSFSMLLNTVGAIPFGYHHWEASTPTPSNLPFFTSQ 183

Query: 183 GEDLHNFILNH 194
           GEDLHNFILNH
Sbjct: 184 GEDLHNFILNH 194

[Close]

BLAST of CmoCh01G004390 vs. TAIR 10
Match: AT3G02150.1 (plastid transcription factor 1 )

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-37
Identity = 79/145 (54.48%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 2   PSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQ 61
           P+S SS+ + W++ KDPRIVRVSRAFGGKDRHSKV T+RGLRDRR+RLS+ TAIQLYDLQ
Sbjct: 47  PTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQ 106

Query: 62  DRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSE---- 121
           +RLG++QPSK VDWLL+AAK+EIDELPPLPI   +  +        +   RP +      
Sbjct: 107 ERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSIFNHHQSFLNLGQRPGQDPTQLG 166

Query: 122 FKIGKEAEDGVAATDEQNELKPNSN 143
           FKI    +     + E+N+ +   N
Sbjct: 167 FKINGCVQKSTTTSREENDREKGEN 191

[Close]

BLAST of CmoCh01G004390 vs. TAIR 10
Match: AT3G02150.2 (plastid transcription factor 1 )

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-37
Identity = 79/145 (54.48%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 2   PSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQ 61
           P+S SS+ + W++ KDPRIVRVSRAFGGKDRHSKV T+RGLRDRR+RLS+ TAIQLYDLQ
Sbjct: 47  PTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQ 106

Query: 62  DRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSVSLGLDYQSMLLPHAQTRPHRSE---- 121
           +RLG++QPSK VDWLL+AAK+EIDELPPLPI   +  +        +   RP +      
Sbjct: 107 ERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSIFNHHQSFLNLGQRPGQDPTQLG 166

Query: 122 FKIGKEAEDGVAATDEQNELKPNSN 143
           FKI    +     + E+N+ +   N
Sbjct: 167 FKINGCVQKSTTTSREENDREKGEN 191

[Close]

BLAST of CmoCh01G004390 vs. TAIR 10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 )

HSP 1 Score: 138.3 bits (347), Expect = 6.6e-33
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 2   PSSSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQ 61
           PSS SS+       ++PRIVRVSR FGGKDRHSKV T+RGLRDRRIRLS+ TAIQLYDLQ
Sbjct: 36  PSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQ 95

Query: 62  DRLGLNQPSKVVDWLLNAAKDEIDELPPLPIP 94
           DRLGL+QPSKV+DWLL AAKD++D+LPPL  P
Sbjct: 96  DRLGLSQPSKVIDWLLEAAKDDVDKLPPLQFP 127

[Close]

BLAST of CmoCh01G004390 vs. TAIR 10
Match: AT5G08070.1 (TCP domain protein 17 )

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-30
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 4  SSSSTVTPWLRLKDPRIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQDR 63
          SS S +T   R  +PRIVRVSRAFGGKDRHSKV T+RGLRDRRIRLS+ TAIQ+YDLQ+R
Sbjct: 10 SSLSLLTQ--RWNNPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQER 69

Query: 64 LGLNQPSKVVDWLLNAAKDEIDELPPLPIP 94
          LGL+QPSKV+DWLL  AK+++D LPPL  P
Sbjct: 70 LGLSQPSKVIDWLLEVAKNDVDLLPPLQFP 97

[Close]

BLAST of CmoCh01G004390 vs. TAIR 10
Match: AT1G30210.1 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 )

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-25
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 19  RIVRVSRAFGGKDRHSKVYTIRGLRDRRIRLSISTAIQLYDLQDRLGLNQPSKVVDWLLN 78
           RI+RVSRA GGKDRHSKV T +GLRDRRIRLS++TAIQ YDLQDRLG +QPSK V+WL+N
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 79  AAKDEIDELPPL 91
           AA D I +LP L
Sbjct: 100 AASDSITDLPLL 111

The following BLAST results are available for this feature:

BLAST of CmoCh01G004390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7W5	6.3e-36	54.48	Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1	[more]
Q9FME3	9.3e-32	73.91	Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1	[more]
Q9LEZ9	4.3e-29	72.22	Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1	[more]
Q10CE8	2.5e-24	46.43	Transcription factor PCF6 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF6 PE=2 ...	[more]
Q9C758	5.5e-24	75.00	Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1	[more]

BLAST of CmoCh01G004390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA18	1.3e-105	100.00	transcription factor TCP13-like OS=Cucurbita moschata OX=3662 GN=LOC111452320 PE...	[more]
A0A6J1KBN8	1.3e-100	96.37	transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111492845 PE=4...	[more]
A0A6J1GTT6	4.6e-66	72.41	transcription factor TCP17-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IU92	7.9e-66	72.64	transcription factor TCP13-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GV58	1.8e-65	71.86	transcription factor TCP17-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of CmoCh01G004390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948741.1	2.7e-105	100.00	transcription factor TCP13-like [Cucurbita moschata]	[more]
KAG6607063.1	6.1e-105	99.48	Transcription factor TCP13, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023525489.1	5.2e-104	98.96	transcription factor TCP13-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG7011064.1	5.2e-104	100.00	Transcription factor TCP13, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023525488.1	9.7e-103	98.95	transcription factor TCP13-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G004390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02150.1	4.4e-37	54.48	plastid transcription factor 1	[more]
AT3G02150.2	4.4e-37	54.48	plastid transcription factor 1	[more]
AT5G60970.1	6.6e-33	73.91	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	3.1e-30	72.22	TCP domain protein 17	[more]
AT1G30210.1	3.9e-25	75.00	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 29..91 e-value: 2.1E-27 score: 96.6
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 29..87 score: 30.10619
None	No IPR available	PANTHER	PTHR31072:SF147	TRANSCRIPTION FACTOR TCP2-LIKE	coord: 4..128
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 4..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G004390.1	CmoCh01G004390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity