CmoCh01G004330 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGATTCTATTTGCAGAGCACTTAGAGACGGTGCGTTAGAGGGAGAGCTCGCGCCTGCTCTCACCTTAAAGGACTCCATCAATTCGCCATTCGGTTTTCACGCATTTGCCCACGTTTTGATGCAGCTTTCGAGCAATATTTTGGCGGGTAAATCGCAGTCTCGGTTAGTTTAATTCCCTTTTAGAGATGTCATTTAGGAGATTGAAATTGTTCGGCTTTGGCAGTCGTTTTGACTCTTTCTTTGGTGGTGTAATTTTGATCTCAGAGGTCTCGTTTTGCTTGCGTTCTCCCGAAGTCCGGCGTATTACCTCGAGCTGTTGAAGAAGAGTGGGGTGAACGTGGGATCGTCTGAAAAATGGTGAAGTTCTCTTTGCAAATTCTTGCATCTGTGCCTTTTTTAATAGTTCAATTTCTGTGAGAACGCCGGGATTACTAGGGAAGAAACGCTTGTTAATAGCATTAGGCGATACTCAGCTAGTAGATTATCGATATTAATATTAATTTTGGTGAAAATGACGCTACAAAGTAGCTAGCATATTTCTCACCATGAGGGATGTAACGAGTCTTGGTATTCTTCAGATTGACTTGAATTTATCATTAGATAAGAGGCATACTCTTTCATATTTCGTATCAATGATTTCTTTTTTCCTTTACTGTTATTTTTTATGTGCAAGTTCAATTGACTATTTTTGTGTTATAGGATTCAAATTTTGGACTGTTATACAGATCCTCTCGGTTGGAAGGAACGGTTTACGGGGGGTGAAAAAATTTCAAATGTTCACCAAGAAGTTTCAAATTTATCTCATCTTTGTACAAATGTGAGGGATATGGATAATCTATTCTCTTCAATTATTACGCTTGGAAAAGGTATGACTATAATCTTGATTGAGAATATAGCGTAGTGATTTTCTGGGCTTATTTTGCAAGAAAAAGGTCACAAGTTAAATTTTAATGTTCTAGCAGGATTTGTTGGAGAAGGAACTGTACGCTTTTGCGTTGCCGTAGACTCGGTACGTTCTCTCCCTCTTTGGTACCATTCAAGGAACCACTTATTGTTAGTATTAACTATGAGCAGACTTGAGACCCCTAGTCTCTTATATTCTTTTCTTGTGTATAGTACCTATTGAATATAATTAAGAATACCAAACTGTCCAGGCGTATTCTCCTTTATCAAACCATCCAGATAATTTATTTTCTCCTGCATATTACTCATTAAATATAGTTAACATCTTGAGACTATCAAATTGTCAAAGAGTATTCTCCTTTCTGGGTTCTATGTTGAAAGTTGATACTTCCTTTCTTCATTGAGGTGTGGCAGCAAGAAATGCGTATAAACAATGTGAATCATCAGTTGCATCTTTTTGTTTTTAGTTTGGTGCTGGTAAAATTCCATAGGGATAAGCTCCACTCTTGTTTATAGTTGTTCTGTAACAGTTCAAGCCCACCGCTAGGAGATATTGTTCTCTTTGGACTGTTCTTTCGAGCTTCCTCTTAAGGTTTTTTAAAACGCATCTGCTAGGGAAAGGTTTCCACACCCGTATAGATGCTTCGTTTTCATCCCCAACCGATGTAGGATCTCTCAATCCTCACCCCCCTTTAGGGCCCAGCTCCTTACTGGCACACTGTCGTGTAAACCCCCTTCAAAACTTAGCCTCCTAGCTGGCACATCGCCCGGTGTCTGGTTCTGATACCATTTGTAATGACTCAAGCCCACTGCTAGTAGATATTGTCCTCTTTGGGATTTCCCTTTCGAGCTTCCCCGAAAGGTTTTCTAAAACGCGTTTGCTAGGGAGAGGTTTCCACACCCTTATAAAAAATGTTTTGTTCTCCTCCTCAACCGACGTGGGATCTCACTTGTTATTTTTGCTCTTTTCTTTATTTCCATTCACTACCAATTTGAATGTCGTTGCTTTTATTTTCTCATTTTTATTTAAGCTTCTGAAATTTTACTAGGTAACCGATATGTTAAGGCATTCTTCTACATCAGCAGTTGCAGGTCTTTTAAGCAACCTTCGGAGCAATGGTATGGATATGATACGATATATTACCTCTGAAATTTTTGCTGCTTAGATAAATCAAATCTTATGAGTTATGATTAATAGTTCACTTGATAGCTCTTATTTGATGGTATGGATATGATATGATAGGATATATTAATCCTGTTTGAACTGTTTACTTGTGATTTTAGATAAGGTTTCAAGTACATTTTGGTTGGTACATGAAGACCTTCACGAGGAAAAGGTCATAGCTGCTCTTGAATATATGTCTTCAATGGTGGCCACAGTTGAGCCATTAACTCCATCCCCATATGTGCGCGAAAGCAGTCTGAACACTCCCTATCTTGAACACAGCTCTACTAAAGGGAGGTTTCATGTGCGGATTAAACGCAGAAATGGACGCGTGCGAGTCATTGTAAAATCTCTTCTTTTGCAAAACTTTTGGTATTTACTTTTGAAATTCACGGTTATAACCATAGATTCTTGATGTTCAATGTTTAGTGTGAAAATTTTAAAGTTGAGCAGTCGGGCATCAAATTTACGTCCATTTCATCTGAAGATGCAGTCGTCAATCAAGGGCTTGTACCGAAGGTTAGTTATCTTGATTTTGGCCTCTTTCATAGTTTCCCAATATTGGACTCTTAAAAATTTGGATCTACCAAAATTGAATTTTATGGTACAAGGAATCATTTTCTTCTTAGGTTTAGGGTTTGTTTGGAATACCTTCTAGTTTAAGCATTTTTTAGAAACGTATTTTTATATCTTTCATTTTTTTTTTATGAAAATATGTTTTTTTTTCTTATGGTATATTTTGAAGATTTTCGGTTAATCACTTTAAAATCATTTTTGGATAATCTATGTTTAAATGTTTCTTCAAAATAGATTTTTAGTTAATCTAATTTCTTAAATGCTTCTTCTTTATTAAAATTTTTCTAAAAAATACTTTTATTCTTCTAAAATCATTCAAAAAGTCACACTAATCATACTTTAAATTAGTAGTTTTTGCAAAGATGCTCATAGAAAAGTTGATTTTGTTAAAAAAAAACTTATTTTTTTCCGAAGTTATTCCAAATGTACTTTGCATCCAAGTTTGAATACACAAGCATGAGGATTTACTCTTGATATGCCTGATCTTTCCCCAACTAGTACAGTGATAGACCCTGAGTCACTACAGTCAATACACGTAGGATTACGAAATAGAAAATAGGGGAGACGAATGATATTGTATGTGAGAAGTCGGCGTGGGCGTGTTGTAATCTTTTGGGCGTGTGTTGCTGTGATTTTATACACCCATGTGCTCCTGTTCGTATGTTGCTGAACGTTTTGTTGTATAAGGATAGTCCTTTAAGGGCATTCCGGAGGGAAGGCGAATGTATGCTTTTGGTATTTTGTTTTAGGACTCGTAATTCGAGTGTTCTTGGAGTTAGGGGAGCCCTCGAATTGAATCTCCCTTGGCTGTTGCCATAAATCATTAGTCATATGAACTTTTTTCTCATAAATTTTCATGAATGAAAAACTGATGAATGGACTACATTTCTTCTCCCAGGTGCAGTTCAATCTTCAGTTGTCTGAGAAAGAGCAAATTGACAGGGCTAGAGTTGTTCTTCCTTTCGAGCATCAAGGTTCGGATTGTCAATGCCCTATCATTGCATATTGCAAAATAATTCTAACCTGATTTGACCCTATTATCCCGGCAGTAAGGTTATCCTGAGTCTTGACTAACTGTTCAAGGTCGACTTTTCTTATAGGAAATGGTAAACCGATACAAATATACGATGGTCGAAGATCTCTTACCGAAAGCAAAGATGACGACAAACCTCTCTCGACCAATGAGAAAAGCAAGGATGAAGAACCAGGGAAGGGAGAGATCATATATTTTCGCGATTCAGAAGACGAGATGCCAGATTCTGATGAAGACCCTGATGATGATTTAGACATATAATTTTGAATGAAGGTAGAATATTTGTATCGTATCTATCTTTTTCGATATCACTTGAAATTGTTGCTGTGAGTTTTATGTGGAACAATGTGTGGAGTAGCAACACAGATCAAATTACCAGTTTGTTTCGTCTTCGGGATGATTTTTAGGACTGAATTATTCTACATAGTTTGTTAATTGTTTCCCATGAACCTCTTACAGTTCCATCTTTCCTTTTTGAAAGGCTGAAAAGGGTGCGAGTAAAAGATATTTAAAAAGAAAAGAAAGAGATGATAAAAACTAAAAAGGAGAACCAATCTATTTGGACCATTTCATCTTTCTTTTCTTTTGCTTTTTATGTCCATATTCCTGCTTGGAAAGCAACTGTTGGGCTCTTTTTTGCTATACATTTATTGTATATATTTGTGAATGATACAAAATTCCACTGTCAATTGGACCATTTTTTTCTT ATGGCGGATTCTATTTGCAGAGCACTTAGAGACGGTGCGTTAGAGGGAGAGCTCGCGCCTGCTCTCACCTTAAAGGACTCCATCAATTCGCCATTCGGTTTTCACGCATTTGCCCACGTTTTGATGCAGCTTTCGAGCAATATTTTGGCGGGTAAATCGCAGTCTCGAGGTCTCGTTTTGCTTGCGTTCTCCCGAAGTCCGGCGTATTACCTCGAGCTGTTGAAGAAGAGTGGGGTGAACGTGGGATCGTCTGAAAAATGGATTCAAATTTTGGACTGTTATACAGATCCTCTCGGTTGGAAGGAACGGTTTACGGGGGGTGAAAAAATTTCAAATGTTCACCAAGAAGTTTCAAATTTATCTCATCTTTGTACAAATGTGAGGGATATGGATAATCTATTCTCTTCAATTATTACGCTTGGAAAAGGATTTGTTGGAGAAGGAACTGTACGCTTTTGCGTTGCCGTAGACTCGGTAACCGATATGTTAAGGCATTCTTCTACATCAGCAGTTGCAGGTCTTTTAAGCAACCTTCGGAGCAATGATAAGGTTTCAAGTACATTTTGGTTGGTACATGAAGACCTTCACGAGGAAAAGGTCATAGCTGCTCTTGAATATATGTCTTCAATGGTGGCCACAGTTGAGCCATTAACTCCATCCCCATATGTGCGCGAAAGCAGTCTGAACACTCCCTATCTTGAACACAGCTCTACTAAAGGGAGGTTTCATGTGCGGATTAAACGCAGAAATGGACGCGTGCGAGTCATTTGTGAAAATTTTAAAGTTGAGCAGTCGGGCATCAAATTTACGTCCATTTCATCTGAAGATGCAGTCGTCAATCAAGGGCTTGTACCGAAGGTGCAGTTCAATCTTCAGTTGTCTGAGAAAGAGCAAATTGACAGGGCTAGAGTTGTTCTTCCTTTCGAGCATCAAGGAAATGGTAAACCGATACAAATATACGATGGTCGAAGATCTCTTACCGAAAGCAAAGATGACGACAAACCTCTCTCGACCAATGAGAAAAGCAAGGATGAAGAACCAGGGAAGGGAGAGATCATATATTTTCGCGATTCAGAAGACGAGATGCCAGATTCTGATGAAGACCCTGATGATGATTTAGACATATAATTTTGAATGAAGGTAGAATATTTGTATCGTATCTATCTTTTTCGATATCACTTGAAATTGTTGCTGTGAGTTTTATGTGGAACAATGTGTGGAGTAGCAACACAGATCAAATTACCAGTTTGTTTCGTCTTCGGGATGATTTTTAGGACTGAATTATTCTACATAGTTTGTTAATTGTTTCCCATGAACCTCTTACAGTTCCATCTTTCCTTTTTGAAAGGCTGAAAAGGGTGCGAGTAAAAGATATTTAAAAAGAAAAGAAAGAGATGATAAAAACTAAAAAGGAGAACCAATCTATTTGGACCATTTCATCTTTCTTTTCTTTTGCTTTTTATGTCCATATTCCTGCTTGGAAAGCAACTGTTGGGCTCTTTTTTGCTATACATTTATTGTATATATTTGTGAATGATACAAAATTCCACTGTCAATTGGACCATTTTTTTCTT ATGGCGGATTCTATTTGCAGAGCACTTAGAGACGGTGCGTTAGAGGGAGAGCTCGCGCCTGCTCTCACCTTAAAGGACTCCATCAATTCGCCATTCGGTTTTCACGCATTTGCCCACGTTTTGATGCAGCTTTCGAGCAATATTTTGGCGGGTAAATCGCAGTCTCGAGGTCTCGTTTTGCTTGCGTTCTCCCGAAGTCCGGCGTATTACCTCGAGCTGTTGAAGAAGAGTGGGGTGAACGTGGGATCGTCTGAAAAATGGATTCAAATTTTGGACTGTTATACAGATCCTCTCGGTTGGAAGGAACGGTTTACGGGGGGTGAAAAAATTTCAAATGTTCACCAAGAAGTTTCAAATTTATCTCATCTTTGTACAAATGTGAGGGATATGGATAATCTATTCTCTTCAATTATTACGCTTGGAAAAGGATTTGTTGGAGAAGGAACTGTACGCTTTTGCGTTGCCGTAGACTCGGTAACCGATATGTTAAGGCATTCTTCTACATCAGCAGTTGCAGGTCTTTTAAGCAACCTTCGGAGCAATGATAAGGTTTCAAGTACATTTTGGTTGGTACATGAAGACCTTCACGAGGAAAAGGTCATAGCTGCTCTTGAATATATGTCTTCAATGGTGGCCACAGTTGAGCCATTAACTCCATCCCCATATGTGCGCGAAAGCAGTCTGAACACTCCCTATCTTGAACACAGCTCTACTAAAGGGAGGTTTCATGTGCGGATTAAACGCAGAAATGGACGCGTGCGAGTCATTTGTGAAAATTTTAAAGTTGAGCAGTCGGGCATCAAATTTACGTCCATTTCATCTGAAGATGCAGTCGTCAATCAAGGGCTTGTACCGAAGGTGCAGTTCAATCTTCAGTTGTCTGAGAAAGAGCAAATTGACAGGGCTAGAGTTGTTCTTCCTTTCGAGCATCAAGGAAATGGTAAACCGATACAAATATACGATGGTCGAAGATCTCTTACCGAAAGCAAAGATGACGACAAACCTCTCTCGACCAATGAGAAAAGCAAGGATGAAGAACCAGGGAAGGGAGAGATCATATATTTTCGCGATTCAGAAGACGAGATGCCAGATTCTGATGAAGACCCTGATGATGATTTAGACATATAA MADSICRALRDGALEGELAPALTLKDSINSPFGFHAFAHVLMQLSSNILAGKSQSRGLVLLAFSRSPAYYLELLKKSGVNVGSSEKWIQILDCYTDPLGWKERFTGGEKISNVHQEVSNLSHLCTNVRDMDNLFSSIITLGKGFVGEGTVRFCVAVDSVTDMLRHSSTSAVAGLLSNLRSNDKVSSTFWLVHEDLHEEKVIAALEYMSSMVATVEPLTPSPYVRESSLNTPYLEHSSTKGRFHVRIKRRNGRVRVICENFKVEQSGIKFTSISSEDAVVNQGLVPKVQFNLQLSEKEQIDRARVVLPFEHQGNGKPIQIYDGRRSLTESKDDDKPLSTNEKSKDEEPGKGEIIYFRDSEDEMPDSDEDPDDDLDI Homology
BLAST of CmoCh01G004330 vs. ExPASy Swiss-Prot
Match: F4IQJ2 (Elongator complex protein 5 OS=Arabidopsis thaliana OX=3702 GN=ELP5 PE=1 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 7.7e-107 Identity = 215/380 (56.58%), Postives = 275/380 (72.37%), Query Frame = 0
BLAST of CmoCh01G004330 vs. ExPASy Swiss-Prot
Match: A1A5V9 (Elongator complex protein 5 OS=Danio rerio OX=7955 GN=elp5 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 1.1e-07 Identity = 69/290 (23.79%), Postives = 114/290 (39.31%), Query Frame = 0
BLAST of CmoCh01G004330 vs. ExPASy TrEMBL
Match: A0A6J1G9J7 (Elongator complex protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111452202 PE=3 SV=1) HSP 1 Score: 733.8 bits (1893), Expect = 3.6e-208 Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
BLAST of CmoCh01G004330 vs. ExPASy TrEMBL
Match: A0A6J1GA78 (Elongator complex protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111452202 PE=3 SV=1) HSP 1 Score: 729.2 bits (1881), Expect = 8.9e-207 Identity = 375/376 (99.73%), Postives = 375/376 (99.73%), Query Frame = 0
BLAST of CmoCh01G004330 vs. ExPASy TrEMBL
Match: A0A6J1K6X0 (Elongator complex protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111492840 PE=3 SV=1) HSP 1 Score: 717.2 bits (1850), Expect = 3.5e-203 Identity = 367/375 (97.87%), Postives = 370/375 (98.67%), Query Frame = 0
BLAST of CmoCh01G004330 vs. ExPASy TrEMBL
Match: A0A6J1K998 (Elongator complex protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111492840 PE=3 SV=1) HSP 1 Score: 712.6 bits (1838), Expect = 8.6e-202 Identity = 367/376 (97.61%), Postives = 370/376 (98.40%), Query Frame = 0
BLAST of CmoCh01G004330 vs. ExPASy TrEMBL
Match: A0A6J1CQU5 (Elongator complex protein 5 OS=Momordica charantia OX=3673 GN=LOC111013317 PE=3 SV=1) HSP 1 Score: 630.6 bits (1625), Expect = 4.3e-177 Identity = 316/376 (84.04%), Postives = 349/376 (92.82%), Query Frame = 0
BLAST of CmoCh01G004330 vs. NCBI nr
Match: XP_022948561.1 (elongator complex protein 5 isoform X2 [Cucurbita moschata]) HSP 1 Score: 733.8 bits (1893), Expect = 7.5e-208 Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
BLAST of CmoCh01G004330 vs. NCBI nr
Match: XP_022948560.1 (elongator complex protein 5 isoform X1 [Cucurbita moschata]) HSP 1 Score: 729.2 bits (1881), Expect = 1.8e-206 Identity = 375/376 (99.73%), Postives = 375/376 (99.73%), Query Frame = 0
BLAST of CmoCh01G004330 vs. NCBI nr
Match: KAG6607058.1 (Elongator complex protein 5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 721.8 bits (1862), Expect = 2.9e-204 Identity = 368/375 (98.13%), Postives = 372/375 (99.20%), Query Frame = 0
BLAST of CmoCh01G004330 vs. NCBI nr
Match: KAG7036759.1 (Elongator complex protein 5 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 720.7 bits (1859), Expect = 6.5e-204 Identity = 367/375 (97.87%), Postives = 372/375 (99.20%), Query Frame = 0
BLAST of CmoCh01G004330 vs. NCBI nr
Match: XP_022998087.1 (elongator complex protein 5 isoform X2 [Cucurbita maxima]) HSP 1 Score: 717.2 bits (1850), Expect = 7.2e-203 Identity = 367/375 (97.87%), Postives = 370/375 (98.67%), Query Frame = 0
BLAST of CmoCh01G004330 vs. TAIR 10
Match: AT2G18410.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 388.7 bits (997), Expect = 5.5e-108 Identity = 215/380 (56.58%), Postives = 275/380 (72.37%), Query Frame = 0
BLAST of CmoCh01G004330 vs. TAIR 10
Match: AT2G18410.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 287.3 bits (734), Expect = 1.7e-77 Identity = 154/292 (52.74%), Postives = 204/292 (69.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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