CmoCh01G004080 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G004080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	Cmo_Chr01: 1991493 .. 1993565 (-)
RNA-Seq Expression	CmoCh01G004080
Synteny	CmoCh01G004080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTCAGTAGAAGAGCATAGTGCGGCTTCGTCTTCCTCTTGAATTCTCTCTATCTCGAAAGACTGTGGCTATGATGTTATCCATGGCTGTTCATCTCCCGCCCAACTTCAATTTCTGTCTCAATACCTCCACCTTCTCTTCCCACAACGCCACTTCTAAACCCTATCAACTCCCTTTTGCTTTGAAGCAAAGAACCACCGCTCTCTCCTCTCCCTCATCTTCGATTTCTTCCTGCATTGCCGACGTCTATTCTGTTTCTGGATTGAAGTTGAGGCGCCAAAGCTTCAGAACTCTCCAAGTCTCTGCTTCTGCTGCGGCCGCTGACGCTGTTCAAGCTGATTCAGAATCGCCTGTTGCTGATGATTCCCTTTCAGAGTCCTCGCCTGATAAGGAGGTCTCTCTCTCTCTCTCTCTCTCATATGCTTGTTCCGTTAATTTTCAGACCAAATTGCTTACTACGTGGCTATGAATTGTTCATTATAATTGGTCATCGAGTACCATTATTATCTATGCAACAAGTTTTCGAATTTTAATGAATTGTTCATTATAATTGGTCATCGAGTACCATTATTATCTATGCAACAAGTTTTCGAATTTTACTGAATTGTTCATTATAATTGGTCATCGAGTACCATTATTATCTATGCAACAAGTTTTCGAATTTTACTTTTGTGATTAACATTGAAGATAATTTCTAATGAGAATGTTGATGTCGATTTCCATGAATTGTTCATTATAATTGGTCATCGAGTACCATTATTATCTATGCAACAAGTTTTCGAATTTTACTTTTGTGATTAACATTGAAGATAATTTCTAATGAGAATGTTGATGTCGATTTCCATGAATTGTTCATTATAATTGGTCATCGAGTACCATTATTATCTATGCAACAAGTTTTCGAATTTTACTTTTGTGATTAACATTGAAGATAATTTCTAATGAGAATGTTGATGTCGATTTCCATGAATTGTTCATTATAATTGGTCATCGAGTACCATTATTATCTATGCAACAAGTTTTCGAATTTTACTTTTGTGATTAACATTGAAGATAATTTCTAATGAGAATGTTGATGTCGATTTCCATGAATACCTAAAAGATAAAGAAATATGAAATGAACATATGGAAGAAGACCAGTTCTCACTCTATAGTACGATGTTTGAGGTAAAGTTAACCTTTAAATGTTGATTTCATTAAGTCGAACCTTAAAATTGTATAACTAATGAATTAATACCTCTTGTTGGTCGTTCTTCTAGGTTTTGGTTAGATGTTGGGCTGGATTCTGGTGATGGAAATTGGGACAGTTACTTTTGTGAACGCTCATTTTTATGGTTGTCTTGAGCATTAGTTTTTGGTTGGATCTTGATGTTTTAGTGTTGAATTCGAGTACATTTTTATGTCGAGAAAAATAGATTTATCAGGAAGGCCTTGTCTTACAAATTAAACATTCATTGTTTTTCCGATGTTGTAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAGCCTGGCCTAATCTCAAATGTAAAAAGTTTCGGAAATTTTTTGATAGTGCTCTTAGATTGTGACTATTCTTGAATCCTACGGCTGTTCTGATGTCCTTTCTCGTATGTTATGAAGTAATATTATAATCTATGAATGACTCTTTTATTGTATATTTTGTTGGTTATGTAAGCCATCTGCAGTTCTCATTTCCCATCGAAAAGTTTGTTCATAGTGAATGTGCAAACCTGTTGTTTTATGCATAGCTGTAATGAGATATTTGTCGTAGTTTTAACAAGTCTGGGTTGATGAAGCTTGATGTTGGGCGACATGGATTTTGTCAGTATAAG

mRNA sequence

TATTTCAGTAGAAGAGCATAGTGCGGCTTCGTCTTCCTCTTGAATTCTCTCTATCTCGAAAGACTGTGGCTATGATGTTATCCATGGCTGTTCATCTCCCGCCCAACTTCAATTTCTGTCTCAATACCTCCACCTTCTCTTCCCACAACGCCACTTCTAAACCCTATCAACTCCCTTTTGCTTTGAAGCAAAGAACCACCGCTCTCTCCTCTCCCTCATCTTCGATTTCTTCCTGCATTGCCGACGTCTATTCTGTTTCTGGATTGAAGTTGAGGCGCCAAAGCTTCAGAACTCTCCAAGTCTCTGCTTCTGCTGCGGCCGCTGACGCTGTTCAAGCTGATTCAGAATCGCCTGTTGCTGATGATTCCCTTTCAGAGTCCTCGCCTGATAAGGAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAGCCTGGCCTAATCTCAAATGTAAAAAGTTTCGGAAATTTTTTGATAGTGCTCTTAGATTGTGACTATTCTTGAATCCTACGGCTGTTCTGATGTCCTTTCTCGTATGTTATGAAGTAATATTATAATCTATGAATGACTCTTTTATTGTATATTTTGTTGGTTATGTAAGCCATCTGCAGTTCTCATTTCCCATCGAAAAGTTTGTTCATAGTGAATGTGCAAACCTGTTGTTTTATGCATAGCTGTAATGAGATATTTGTCGTAGTTTTAACAAGTCTGGGTTGATGAAGCTTGATGTTGGGCGACATGGATTTTGTCAGTATAAG

Coding sequence (CDS)

ATGATGTTATCCATGGCTGTTCATCTCCCGCCCAACTTCAATTTCTGTCTCAATACCTCCACCTTCTCTTCCCACAACGCCACTTCTAAACCCTATCAACTCCCTTTTGCTTTGAAGCAAAGAACCACCGCTCTCTCCTCTCCCTCATCTTCGATTTCTTCCTGCATTGCCGACGTCTATTCTGTTTCTGGATTGAAGTTGAGGCGCCAAAGCTTCAGAACTCTCCAAGTCTCTGCTTCTGCTGCGGCCGCTGACGCTGTTCAAGCTGATTCAGAATCGCCTGTTGCTGATGATTCCCTTTCAGAGTCCTCGCCTGATAAGGAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAGCCTGGCCTAA

Protein sequence

MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA

Homology

[Close]

BLAST of CmoCh01G004080 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.0e-48
Identity = 114/200 (57.00%), Postives = 134/200 (67.00%), Query Frame = 0


Query: 2   MLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVYS 61
           MLSMAV   PN N     S + S   + KP++ P A        SSPS S          
Sbjct: 1   MLSMAVQ--PNINAIAKPSIYQSPKLSLKPFKTP-AFANPKPFFSSPSFS---------- 60

Query: 62  VSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPR 121
               +L++++  +L V A    +D     +E  + DD L     +KEKL V+VKPM+KPR
Sbjct: 61  ----QLKKKNNWSLFV-APETISDVAIMGNEVDIDDDLL----VNKEKLKVLVKPMDKPR 120

Query: 122 LVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMII 181
           LVLKFIWMEKNIG+ LDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMII
Sbjct: 121 LVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMII 178

Query: 182 LLNQATDIINLWQQGGGSLA 202
           LLNQATDIINLWQQ GG+LA
Sbjct: 181 LLNQATDIINLWQQSGGNLA 178

[Close]

BLAST of CmoCh01G004080 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-41
Identity = 97/178 (54.49%), Postives = 117/178 (65.73%), Query Frame = 0


Query: 31  PYQLPFALKQRTTALSSPSSSISSCIADVYSVSGLKLRRQSFRTLQVSASAAAADAVQA- 90
           P   P    +   +L  PS+  SS      S+  LK RR   R+L+   +AAAA AV+A 
Sbjct: 8   PATTPALASRPRVSLPRPSTPSSSS-----SLVHLKSRRPPLRSLRSLTAAAAAAAVEAG 67

Query: 91  ------DSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPG 150
                   + P+  +  +E+  + E+  V V   + P LVLKFIWMEKNIGI LDQM+PG
Sbjct: 68  EPYFGLGDDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPG 127

Query: 151 HGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA 202
            G+IPLSPYYFWPRKDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQGGGSL+
Sbjct: 128 VGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of CmoCh01G004080 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-39
Identity = 74/102 (72.55%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 101 SESSP-DKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKD 160
           SES P  K+K+ V+VKP+EKP++VLKF+WM+K+IG+ LD MIPG GTIPLSPYYFWPRKD
Sbjct: 82  SESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKD 141

Query: 161 AWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA 202
           AWEELK LLESKPWIS+   + LLNQATDIINLWQ  GG L+
Sbjct: 142 AWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183

[Close]

BLAST of CmoCh01G004080 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.8e-38
Identity = 80/131 (61.07%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 70  QSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWM 129
           Q+ + + V        A +  +   V     S+++P  ++   VVKP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTP--QQTIKVVKPDEKSRVVLKFVWM 94

Query: 130 EKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 189
           EKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 190 INLWQQGGGSL 201
           INLWQQ GG+L
Sbjct: 155 INLWQQSGGNL 163

[Close]

BLAST of CmoCh01G004080 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-21
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           +  LK +W+E NI I +DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 3   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 62

Query: 181 ILLNQATDIINLWQQGG 198
            LLN+ T++IN WQ+ G
Sbjct: 63  ELLNKTTEVINYWQEEG 78

[Close]

BLAST of CmoCh01G004080 vs. ExPASy TrEMBL
Match: A0A6J1GBD3 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452451 PE=3 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 4.7e-106
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60
           MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60

Query: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120
           SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGSLA 202
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of CmoCh01G004080 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.6e-101
Identity = 194/201 (96.52%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60
           MMLSMAV L PN NFCLNTSTFSSHNATSKP+Q+PFALKQRT ALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120
           SVSGLKLRRQSF+TLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGSLA 202
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of CmoCh01G004080 vs. ExPASy TrEMBL
Match: A0A6J1D356 (30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016859 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.2e-80
Identity = 163/202 (80.69%), Postives = 173/202 (85.64%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTA--LSSPSSSISSCIAD 60
           MMLSMAV L PN NFCLNTS F + NATSKP+Q+ F +KQRTTA    SPSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120
            +  SG K RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGSL 201
           MIILLNQATDIINLWQQGGG+L
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of CmoCh01G004080 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.0e-77
Identity = 157/201 (78.11%), Postives = 171/201 (85.07%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60
           MMLSMAV L PN +FC NTS F++  A SKP+QLPFA+KQRTTA        SSCI + +
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTA--------SSCIPNFH 60

Query: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120
           SV GLKLRRQ+ RT ++SASA + +AV+A SES V DDS S SSP KEKLGVVVKPMEKP
Sbjct: 61  SVFGLKLRRQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGSLA 202
           ILLNQATDIINLWQQGGG+LA
Sbjct: 181 ILLNQATDIINLWQQGGGNLA 192

[Close]

BLAST of CmoCh01G004080 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.0e-76
Identity = 156/201 (77.61%), Postives = 172/201 (85.57%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60
           MMLSMAV L PN NFC NTS F++  A SKP++LPFA++QRTTA        SSCI + +
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTA--------SSCIPNFH 81

Query: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120
           +V GL+LRRQ+FRT ++SASAA  +AV+A SE  VADDS S SSP KEKLGVVVKPMEKP
Sbjct: 82  TVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKP 141

Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 142 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 201

Query: 181 ILLNQATDIINLWQQGGGSLA 202
           ILLNQATDIINLWQQGGG+LA
Sbjct: 202 ILLNQATDIINLWQQGGGNLA 213

[Close]

BLAST of CmoCh01G004080 vs. NCBI nr
Match: XP_022948960.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 393.7 bits (1010), Expect = 9.8e-106
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60
           MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60

Query: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120
           SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGSLA 202
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of CmoCh01G004080 vs. NCBI nr
Match: KAG6607038.1 (30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 385.6 bits (989), Expect = 2.7e-103
Identity = 198/201 (98.51%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60
           MMLSMAV L PNFNFCLNT TFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY
Sbjct: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 77

Query: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120
           SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 78  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 137

Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 138 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 197

Query: 181 ILLNQATDIINLWQQGGGSLA 202
           ILLNQATDIINLWQQGGGSLA
Sbjct: 198 ILLNQATDIINLWQQGGGSLA 218

[Close]

BLAST of CmoCh01G004080 vs. NCBI nr
Match: XP_023522262.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.5 bits (981), Expect = 2.3e-102
Identity = 196/201 (97.51%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60
           MMLSMAV L PN NFCLNTSTFSSHNATSKPYQ+PF+LKQRTTALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPYQVPFSLKQRTTALSSPSSSISSCIADVY 60

Query: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120
           SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGSLA 202
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of CmoCh01G004080 vs. NCBI nr
Match: XP_022997676.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 378.6 bits (971), Expect = 3.3e-101
Identity = 194/201 (96.52%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVY 60
           MMLSMAV L PN NFCLNTSTFSSHNATSKP+Q+PFALKQRT ALSSPSSSISSCIADVY
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120
           SVSGLKLRRQSF+TLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGSLA 202
           ILLNQATDIINLWQQGGGSLA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of CmoCh01G004080 vs. NCBI nr
Match: XP_022148098.1 (30S ribosomal protein 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 309.3 bits (791), Expect = 2.4e-80
Identity = 163/202 (80.69%), Postives = 173/202 (85.64%), Query Frame = 0


Query: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTA--LSSPSSSISSCIAD 60
           MMLSMAV L PN NFCLNTS F + NATSKP+Q+ F +KQRTTA    SPSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120
            +  SG K RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGSL 201
           MIILLNQATDIINLWQQGGG+L
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of CmoCh01G004080 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-40
Identity = 74/102 (72.55%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 101 SESSP-DKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKD 160
           SES P  K+K+ V+VKP+EKP++VLKF+WM+K+IG+ LD MIPG GTIPLSPYYFWPRKD
Sbjct: 82  SESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKD 141

Query: 161 AWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGSLA 202
           AWEELK LLESKPWIS+   + LLNQATDIINLWQ  GG L+
Sbjct: 142 AWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183

[Close]

BLAST of CmoCh01G004080 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-39
Identity = 80/131 (61.07%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 70  QSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWM 129
           Q+ + + V        A +  +   V     S+++P  ++   VVKP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTP--QQTIKVVKPDEKSRVVLKFVWM 94

Query: 130 EKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 189
           EKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 190 INLWQQGGGSL 201
           INLWQQ GG+L
Sbjct: 155 INLWQQSGGNL 163

[Close]

BLAST of CmoCh01G004080 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-39
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 70  QSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWM 129
           Q+ + + V        A +  +   V     S+++P +      +KP EK R+VLKF+WM
Sbjct: 35  QTTKPISVKRKIITLAAPETLTAETVTGIDTSDNTPQQ-----TIKPDEKSRVVLKFVWM 94

Query: 130 EKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 189
           EKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDI
Sbjct: 95  EKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDI 154

Query: 190 INLWQQGGGSL 201
           INLWQQ GG+L
Sbjct: 155 INLWQQSGGNL 160

The following BLAST results are available for this feature:

BLAST of CmoCh01G004080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	2.0e-48	57.00	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
O48609	2.3e-41	54.49	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
Q9LFV0	3.7e-39	72.55	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
Q9SX22	1.8e-38	61.07	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
P51351	2.0e-21	55.84	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of CmoCh01G004080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBD3	4.7e-106	100.00	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1K853	1.6e-101	96.52	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1D356	1.2e-80	80.69	30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3CF24	6.0e-77	78.11	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A0A0L9T8	1.0e-76	77.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]

BLAST of CmoCh01G004080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948960.1	9.8e-106	100.00	30S ribosomal protein 3, chloroplastic-like [Cucurbita moschata]	[more]
KAG6607038.1	2.7e-103	98.51	30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023522262.1	2.3e-102	97.51	30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997676.1	3.3e-101	96.52	30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima]	[more]
XP_022148098.1	2.4e-80	80.69	30S ribosomal protein 3, chloroplastic-like [Momordica charantia]	[more]

BLAST of CmoCh01G004080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15760.1	2.6e-40	72.55	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.1	1.3e-39	61.07	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	3.8e-39	59.54	Ribosomal protein PSRP-3/Ycf65	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 121..199 e-value: 1.6E-32 score: 113.4
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 149..195 e-value: 1.1E-26 score: 92.7
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..107
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G004080.1	CmoCh01G004080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0003735	structural constituent of ribosome