CmoCh01G004040 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G004040
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 1974724 .. 1975506 (+)
RNA-Seq Expression	CmoCh01G004040
Synteny	CmoCh01G004040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAATTCATTTTTCAGCAGAACACCTTTTTTTCATGTGAAGAGACAAGGGGGTATGCCTCTATCTCTGATCTGAAGGACCCTGTTGTGTGTCCCAAGCCCCGGCGGCTTGCAATTCTTGCTAACAATCACATTAAACACCCCTTGAAATGGCACCAAGCTGAGGCTTGTGATTCAAAAGCTGGGGCAGACCTTCTAGACATCATTTTAAACAAGGCTAGCTCTCACTCCCCTGATTCAACTTGAGTTCTTTACATGATCTACTAATGAATGTCATTATAATGTGATTTGAATGTCGATAGGGGTCGGAACAATCTAGCATCAATGTGGCGTCATCACCTCCGTTTTATTGCGGGTCTCCGCCGAGCAGAGCTTCCAATCCATTAATCCAGGATGCGCAGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATATTCCCCATTGAGTCTCTCGTCGCCATCATCGGCGGGGTCGCACAAAGGGGGAGGAGGGTGTGCTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTGAGTAGGGACCGGCAGAATTCAAGGATCCCTGCAGTTGCTTGAAAACCAACCTCCATGAATGGAAGTGTAAATAGAGAATGGAGAGTGGCAGCAGAGTTTTCAACCACAGGCAAGACAACACTACTTTTGTAACAAGCAGAGGAAGCAATATTTCACGATAGGGATGCATGAGAATTTGAGATCATCCACGTCTCAAGTGTAG

mRNA sequence

ATGAATCAATTCATTTTTCAGCAGAACACCTTTTTTTCATGTGAAGAGACAAGGGGGTATGCCTCTATCTCTGATCTGAAGGACCCTGTTGTGTGTCCCAAGCCCCGGCGGCTTGCAATTCTTGCTAACAATCACATTAAACACCCCTTGAAATGGCACCAAGCTGAGGCTTGTGATTCAAAAGCTGGGGCAGACCTTCTAGACATCATTTTAAACAAGGGGTCGGAACAATCTAGCATCAATGTGGCGTCATCACCTCCGTTTTATTGCGGGTCTCCGCCGAGCAGAGCTTCCAATCCATTAATCCAGGATGCGCAGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATATTCCCCATTGAGTCTCTCGTCGCCATCATCGGCGGGGTCGCACAAAGGGGGAGGAGGGTGTGCTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTGAAGAATGGAGAGTGGCAGCAGAGTTTTCAACCACAGGCAAGACAACACTACTTTTGTAACAAGCAGAGGAAGCAATATTTCACGATAGGGATGCATGAGAATTTGAGATCATCCACGTCTCAAGTGTAG

Coding sequence (CDS)

ATGAATCAATTCATTTTTCAGCAGAACACCTTTTTTTCATGTGAAGAGACAAGGGGGTATGCCTCTATCTCTGATCTGAAGGACCCTGTTGTGTGTCCCAAGCCCCGGCGGCTTGCAATTCTTGCTAACAATCACATTAAACACCCCTTGAAATGGCACCAAGCTGAGGCTTGTGATTCAAAAGCTGGGGCAGACCTTCTAGACATCATTTTAAACAAGGGGTCGGAACAATCTAGCATCAATGTGGCGTCATCACCTCCGTTTTATTGCGGGTCTCCGCCGAGCAGAGCTTCCAATCCATTAATCCAGGATGCGCAGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATATTCCCCATTGAGTCTCTCGTCGCCATCATCGGCGGGGTCGCACAAAGGGGGAGGAGGGTGTGCTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTGAAGAATGGAGAGTGGCAGCAGAGTTTTCAACCACAGGCAAGACAACACTACTTTTGTAACAAGCAGAGGAAGCAATATTTCACGATAGGGATGCATGAGAATTTGAGATCATCCACGTCTCAAGTGTAG

Protein sequence

MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCLKNGEWQQSFQPQARQHYFCNKQRKQYFTIGMHENLRSSTSQV

Homology

[Close]

BLAST of CmoCh01G004040 vs. ExPASy TrEMBL
Match: A0A6J1GAN1 (uncharacterized protein LOC111452452 OS=Cucurbita moschata OX=3662 GN=LOC111452452 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.1e-88
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS
Sbjct: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA
Sbjct: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120

Query: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
           AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL
Sbjct: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 165

[Close]

BLAST of CmoCh01G004040 vs. ExPASy TrEMBL
Match: A0A6J1K5S1 (uncharacterized protein LOC111492569 OS=Cucurbita maxima OX=3661 GN=LOC111492569 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.6e-85
Identity = 160/165 (96.97%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MNQFIFQQNTF+SCEETRGYASISDLK+PVVCPKPRRLAILANNHIKHPLKWHQAEACDS
Sbjct: 1   MNQFIFQQNTFYSCEETRGYASISDLKNPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDA+FRDEKLSSPMPVLA
Sbjct: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLA 120

Query: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
           AAAYSPLSLSSPSSAGSHKGGGG  ARMTFGLKPAAVRVEGFDCL
Sbjct: 121 AAAYSPLSLSSPSSAGSHKGGGGGCARMTFGLKPAAVRVEGFDCL 165

[Close]

BLAST of CmoCh01G004040 vs. ExPASy TrEMBL
Match: A0A5A7V5L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00090 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-66
Identity = 137/165 (83.03%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MN FI QQNTF SCEETRG+ASISDLKDPVVCPKPRRLAILANNHIK PL+WHQ E CDS
Sbjct: 88  MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 147

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIIL KGSEQSS +VASSPPF+ GSPPSRASNPLIQDA+F DEKL SPMP L 
Sbjct: 148 KAGADLLDIILKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKL-SPMPAL- 207

Query: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
             AYSP  LSSPSSA S   GGGC ARM FGLKPAAVRVEGFDCL
Sbjct: 208 -PAYSPSGLSSPSSASSAHKGGGC-ARMKFGLKPAAVRVEGFDCL 248

[Close]

BLAST of CmoCh01G004040 vs. ExPASy TrEMBL
Match: A0A0A0L9U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-66
Identity = 137/165 (83.03%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MN FI QQNTF SCEETRG+ASISDLKDPVVCPKPRRLAILANNHIK PL+WHQ E CDS
Sbjct: 1   MNHFIVQQNTFLSCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIIL KGSEQSS +VASSPPF+ GSPPSRASNPLIQDA+F DEKL SPMP L 
Sbjct: 61  KAGADLLDIILKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKL-SPMPAL- 120

Query: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
             AYSP  LSSPSSA S   GGGC ARM FGLKPAAVRVEGFDCL
Sbjct: 121 -PAYSPSGLSSPSSASSAHKGGGC-ARMKFGLKPAAVRVEGFDCL 161

[Close]

BLAST of CmoCh01G004040 vs. ExPASy TrEMBL
Match: A0A1S3CF27 (uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.9e-66
Identity = 137/165 (83.03%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MN FI QQNTF SCEETRG+ASISDLKDPVVCPKPRRLAILANNHIK PL+WHQ E CDS
Sbjct: 1   MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIIL KGSEQSS +VASSPPF+ GSPPSRASNPLIQDA+F DEKL SPMP L 
Sbjct: 61  KAGADLLDIILKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKL-SPMPGL- 120

Query: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
             AYSP  LSSPSSA S   GGGC ARM FGLKPAAVRVEGFDCL
Sbjct: 121 -PAYSPSGLSSPSSASSAHKGGGC-ARMKFGLKPAAVRVEGFDCL 161

[Close]

BLAST of CmoCh01G004040 vs. NCBI nr
Match: XP_022948961.1 (uncharacterized protein LOC111452452 [Cucurbita moschata])

HSP 1 Score: 335.1 bits (858), Expect = 4.3e-88
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS
Sbjct: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA
Sbjct: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120

Query: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
           AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL
Sbjct: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 165

[Close]

BLAST of CmoCh01G004040 vs. NCBI nr
Match: XP_022997677.1 (uncharacterized protein LOC111492569 [Cucurbita maxima])

HSP 1 Score: 324.3 bits (830), Expect = 7.5e-85
Identity = 160/165 (96.97%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MNQFIFQQNTF+SCEETRGYASISDLK+PVVCPKPRRLAILANNHIKHPLKWHQAEACDS
Sbjct: 1   MNQFIFQQNTFYSCEETRGYASISDLKNPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDA+FRDEKLSSPMPVLA
Sbjct: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLA 120

Query: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
           AAAYSPLSLSSPSSAGSHKGGGG  ARMTFGLKPAAVRVEGFDCL
Sbjct: 121 AAAYSPLSLSSPSSAGSHKGGGGGCARMTFGLKPAAVRVEGFDCL 165

[Close]

BLAST of CmoCh01G004040 vs. NCBI nr
Match: XP_023524595.1 (uncharacterized protein LOC111788490 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 160/168 (95.24%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MNQFIFQQNTFFSCEET GYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS
Sbjct: 1   MNQFIFQQNTFFSCEETWGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIILNKGSEQSS+NVASSPPFYCGSPPSRASNPLIQDA+FRDEKLSSPMPVLA
Sbjct: 61  KAGADLLDIILNKGSEQSSVNVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLA 120

Query: 121 AAAYSPLSLSSPSSA---GSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
           AAAYSPLSLSSPSSA   GSHKGGGG  ARMTFGLKPAAVRVEGFDCL
Sbjct: 121 AAAYSPLSLSSPSSATATGSHKGGGGGCARMTFGLKPAAVRVEGFDCL 168

[Close]

BLAST of CmoCh01G004040 vs. NCBI nr
Match: KAG6607033.1 (hypothetical protein SDJN03_00375, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.0 bits (746), Expect = 4.1e-75
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 18  RGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADLLDIILNKGSEQ 77
           +GYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADLLDIILNKGSEQ
Sbjct: 387 QGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDSKAGADLLDIILNKGSEQ 446

Query: 78  SSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPSSAGS 137
           SSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPSSAGS
Sbjct: 447 SSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPSSAGS 506

Query: 138 HKGGGGCAARMTFGLKPAAVRVEGFDCL 166
           HKGGGG  ARMTFGLKPAAVRVEGFDCL
Sbjct: 507 HKGGGGGCARMTFGLKPAAVRVEGFDCL 534

[Close]

BLAST of CmoCh01G004040 vs. NCBI nr
Match: XP_011651371.1 (uncharacterized protein LOC101218020 [Cucumis sativus] >XP_031739033.1 uncharacterized protein LOC101218020 [Cucumis sativus] >KGN57754.1 hypothetical protein Csa_011219 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 2.7e-66
Identity = 137/165 (83.03%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEACDS 60
           MN FI QQNTF SCEETRG+ASISDLKDPVVCPKPRRLAILANNHIK PL+WHQ E CDS
Sbjct: 1   MNHFIVQQNTFLSCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 61  KAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLA 120
           KAGADLLDIIL KGSEQSS +VASSPPF+ GSPPSRASNPLIQDA+F DEKL SPMP L 
Sbjct: 61  KAGADLLDIILKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKL-SPMPAL- 120

Query: 121 AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
             AYSP  LSSPSSA S   GGGC ARM FGLKPAAVRVEGFDCL
Sbjct: 121 -PAYSPSGLSSPSSASSAHKGGGC-ARMKFGLKPAAVRVEGFDCL 161

[Close]

BLAST of CmoCh01G004040 vs. TAIR 10
Match: AT5G16110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-35
Identity = 93/185 (50.27%), Postives = 112/185 (60.54%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKWHQAEA--- 60
           MN    QQN F S EE  G+    D KD VVCPKPRR+ +LANN I+ PL+ H ++A   
Sbjct: 67  MNHCNLQQNAFMSREEMMGF----DRKDLVVCPKPRRVGLLANNVIR-PLRLHMSQAAAD 126

Query: 61  -CDSKAGADLLDIILNKGSEQSSIN--VASSPPFYCGSPPSRASNPLIQDAQFRDEKLSS 120
            CDSKAGA+LL+II  K  +  +I   ++SSPP++ GSPPSRA+NPL QDA+FRDEKL+ 
Sbjct: 127 LCDSKAGAELLEIIRRK-EDNGTIGQLLSSSPPYFPGSPPSRAANPLAQDARFRDEKLNP 186

Query: 121 PMPVLA-AAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCLKNGEWQQS 179
             P       YS     SPSS+ S     GC  RM FGL   AVRVEGFDCL       S
Sbjct: 187 ISPNSPFLQPYSATGFPSPSSSSSSSSSRGC-VRMKFGLNSPAVRVEGFDCLNRDRQNSS 244

[Close]

BLAST of CmoCh01G004040 vs. TAIR 10
Match: AT3G02555.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 93/184 (50.54%), Postives = 105/184 (57.07%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASI-SDLKDPVVCPKPRRLAILANNHIKHPLKWHQA---- 60
           MN    QQN F S EE+RG+  I S   D VVCPKPRR    ANN I+ P + H +    
Sbjct: 1   MNHCSLQQNAFLSREESRGFVPIYSHPVDSVVCPKPRR----ANNVIR-PFRLHFSLSGA 60

Query: 61  -EACDSKAGADLLDIILNKGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSS 120
            + CDSKAG DLLDI   K S  S      SPPF+ GSPPSRA+NPL QDA+F DEKL++
Sbjct: 61  DDVCDSKAGEDLLDIFRRKESVSS-----RSPPFFLGSPPSRAANPLAQDARFGDEKLNT 120

Query: 121 PMPVLAAAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCLKNGEWQQSF 179
             P L     SPL L S S   S     GC  RM FG+KPA VRVEGFDCL       S 
Sbjct: 121 VSPSL-----SPL-LPSASRVKS-----GC-GRMKFGVKPATVRVEGFDCLNRDRPNSSI 162

[Close]

BLAST of CmoCh01G004040 vs. TAIR 10
Match: AT1G68490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-28
Identity = 84/178 (47.19%), Postives = 103/178 (57.87%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDL---KDPVVCPKPRRLAILANNHIKHPLK------ 60
           MN F  Q N F +  + R  +S+S +   +  VVCPKPRR+ +  N+H  HP +      
Sbjct: 1   MNHFAVQPNAFAAGGDLRS-SSVSVVERDQTTVVCPKPRRIGLRNNHH--HPSRSLRCYF 60

Query: 61  WHQAEACDSKAGADLLDIILNK---GSEQSSINVASSP-PFYCGSPPSRASNPLIQDAQF 120
            HQ E C+SKA  D+LDIIL K   G+EQ +  V  SP PF CGSPPSR +NPL QDA+F
Sbjct: 61  SHQLELCESKAETDILDIILTKDGYGAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARF 120

Query: 121 RDEKLSSPMPVLAAAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDCL 166
           RDE +S    +       P   SSPSS+   K  GGC  R  FG  P  VRVEGFDCL
Sbjct: 121 RDEIVSVSSVIPPQLGLPP--SSSPSSSSGRK--GGCVVRGNFGNSP-KVRVEGFDCL 170

[Close]

BLAST of CmoCh01G004040 vs. TAIR 10
Match: AT1G13390.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.5 bits (288), Expect = 4.9e-26
Identity = 73/172 (42.44%), Postives = 97/172 (56.40%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKW---HQAEA 60
           MN    QQN F   EE R  A++SD +D V+CPKPRR+  L N+H    L+W   HQ E 
Sbjct: 2   MNSCGIQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGAL-NHHSSRSLRWQLNHQMEL 61

Query: 61  CDSKAGADLLDIILNK----GSEQSSINVASSPP-FYCGSPPSRASNPLIQDAQFRDEKL 120
           C+S +G+++LD IL K    G EQ       +PP F+ GSPPSR SNPL +D+ FR+E L
Sbjct: 62  CESNSGSEILDFILTKGGGGGGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREELL 121

Query: 121 SSPMPVLAAAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDC 165
                ++A+ + S    + P    S + G    A  +FG  P  VRV GFDC
Sbjct: 122 -----MVASPSPSTPRATKPQPPSSPRNGSCVMAATSFGNNP-VVRVVGFDC 163

[Close]

BLAST of CmoCh01G004040 vs. TAIR 10
Match: AT1G13390.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.5 bits (288), Expect = 4.9e-26
Identity = 73/172 (42.44%), Postives = 97/172 (56.40%), Query Frame = 0


Query: 1   MNQFIFQQNTFFSCEETRGYASISDLKDPVVCPKPRRLAILANNHIKHPLKW---HQAEA 60
           MN    QQN F   EE R  A++SD +D V+CPKPRR+  L N+H    L+W   HQ E 
Sbjct: 2   MNSCGIQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGAL-NHHSSRSLRWQLNHQMEL 61

Query: 61  CDSKAGADLLDIILNK----GSEQSSINVASSPP-FYCGSPPSRASNPLIQDAQFRDEKL 120
           C+S +G+++LD IL K    G EQ       +PP F+ GSPPSR SNPL +D+ FR+E L
Sbjct: 62  CESNSGSEILDFILTKGGGGGGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREELL 121

Query: 121 SSPMPVLAAAAYSPLSLSSPSSAGSHKGGGGCAARMTFGLKPAAVRVEGFDC 165
                ++A+ + S    + P    S + G    A  +FG  P  VRV GFDC
Sbjct: 122 -----MVASPSPSTPRATKPQPPSSPRNGSCVMAATSFGNNP-VVRVVGFDC 163

The following BLAST results are available for this feature:

BLAST of CmoCh01G004040 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G004040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAN1	2.1e-88	100.00	uncharacterized protein LOC111452452 OS=Cucurbita moschata OX=3662 GN=LOC1114524...	[more]
A0A6J1K5S1	3.6e-85	96.97	uncharacterized protein LOC111492569 OS=Cucurbita maxima OX=3661 GN=LOC111492569...	[more]
A0A5A7V5L2	1.3e-66	83.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L9U7	1.3e-66	83.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1	[more]
A0A1S3CF27	2.9e-66	83.03	uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=...	[more]

BLAST of CmoCh01G004040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948961.1	4.3e-88	100.00	uncharacterized protein LOC111452452 [Cucurbita moschata]	[more]
XP_022997677.1	7.5e-85	96.97	uncharacterized protein LOC111492569 [Cucurbita maxima]	[more]
XP_023524595.1	4.1e-83	95.24	uncharacterized protein LOC111788490 [Cucurbita pepo subsp. pepo]	[more]
KAG6607033.1	4.1e-75	97.97	hypothetical protein SDJN03_00375, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011651371.1	2.7e-66	83.03	uncharacterized protein LOC101218020 [Cucumis sativus] >XP_031739033.1 uncharact...	[more]

BLAST of CmoCh01G004040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16110.1	2.6e-35	50.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02555.1	1.1e-30	50.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G68490.1	3.1e-28	47.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G13390.1	4.9e-26	42.44	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13390.2	4.9e-26	42.44	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33384	EXPRESSED PROTEIN	coord: 1..167
None	No IPR available	PANTHER	PTHR33384:SF30	BNAC02G06400D PROTEIN	coord: 1..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G004040.1	CmoCh01G004040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane