CmoCh01G003980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 1954772 .. 1955470 (+)
RNA-Seq Expression	CmoCh01G003980
Synteny	CmoCh01G003980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATCCCAATCGCTTCCTCCGCCGCCATCGCCACCAGCAACCCACCCACGGCAATGGCTGCAGCGGCGGTGATCATACCTGCCGCCATGGCGATCATGATTCTACTGCTCAACCCAACTACTTCCGATGCTCTTACATCTTTCAAACCACTCAACAACGACACTTCCGGTAAGCATAAACAATAAAAACTTGTAATTTACATAAAATTTGACCATAAATTATGAAACCCTTTATTTGTTTTTTGTGTTCGTGTTCAATTTGCGTGACCCAGCTGCCGGAAAGTACCTCATCGGAGACCAAGACCTCGACTCAGAGTTTCTAATGGAATCGCACATCAGCCGGATCCTAGCAGGCTCCCAAAACTTCCAAACCAGCAAAACTAACGACGCCAACAAAGCTTCTGGCGGCGGCTGCGGGCGGCCGCCGCGTTATGACAGTTGCCTCGGCCAGAAATCAAACAATCCGCCGCCGGAAAATTGTGGGACCTTCAACCGCAATAATCCCTGTTAGAAAAGGACAATCCATAGATCACAAAGCTTATGATCTCTCAACAACAATGTAATGTCTCAATTGTTTACCTCTTTCATTTAATTTCGATTGTGTTCTTCATGTATTGCGTTTTTTTTTTAATTTTTAATTTCAATAAAATATTTTTCCAACGTTTAATTCTAATTTGTTTAAAAATTATATCATCATAT

mRNA sequence

CACATCCCAATCGCTTCCTCCGCCGCCATCGCCACCAGCAACCCACCCACGGCAATGGCTGCAGCGGCGGTGATCATACCTGCCGCCATGGCGATCATGATTCTACTGCTCAACCCAACTACTTCCGATGCTCTTACATCTTTCAAACCACTCAACAACGACACTTCCGCTGCCGGAAAGTACCTCATCGGAGACCAAGACCTCGACTCAGAGTTTCTAATGGAATCGCACATCAGCCGGATCCTAGCAGGCTCCCAAAACTTCCAAACCAGCAAAACTAACGACGCCAACAAAGCTTCTGGCGGCGGCTGCGGGCGGCCGCCGCGTTATGACAGTTGCCTCGGCCAGAAATCAAACAATCCGCCGCCGGAAAATTGTGGGACCTTCAACCGCAATAATCCCTGTTAGAAAAGGACAATCCATAGATCACAAAGCTTATGATCTCTCAACAACAATGTAATGTCTCAATTGTTTACCTCTTTCATTTAATTTCGATTGTGTTCTTCATGTATTGCGTTTTTTTTTTAATTTTTAATTTCAATAAAATATTTTTCCAACGTTTAATTCTAATTTGTTTAAAAATTATATCATCATAT

Coding sequence (CDS)

ATGGCTGCAGCGGCGGTGATCATACCTGCCGCCATGGCGATCATGATTCTACTGCTCAACCCAACTACTTCCGATGCTCTTACATCTTTCAAACCACTCAACAACGACACTTCCGCTGCCGGAAAGTACCTCATCGGAGACCAAGACCTCGACTCAGAGTTTCTAATGGAATCGCACATCAGCCGGATCCTAGCAGGCTCCCAAAACTTCCAAACCAGCAAAACTAACGACGCCAACAAAGCTTCTGGCGGCGGCTGCGGGCGGCCGCCGCGTTATGACAGTTGCCTCGGCCAGAAATCAAACAATCCGCCGCCGGAAAATTGTGGGACCTTCAACCGCAATAATCCCTGTTAG

Protein sequence

MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC

Homology

[Close]

BLAST of CmoCh01G003980 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60
           MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003980 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.5e-54
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60
           MAAAAV+IPAAMAIMILLLNPT+SDALT+FKPLNNDTSAAGKYLIGDQD+DSEFLMESHI
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQ+FQTSKTNDANKASGGGC RPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003980 vs. ExPASy TrEMBL
Match: A0A5D3BS53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002320 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.0e-36
Identity = 82/119 (68.91%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLN-PTTSDALTSFKP-LNNDTSAAGKYLIGDQDLDSEFLMES 60
           M A+A +IPAA+  MILLLN P++ +ALT+F+P L+N TS   + ++G++D+D EF+MES
Sbjct: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60

Query: 61  HISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           HISRILA SQNFQT+ T DANKASGGGCGRPPRYDSCLGQK NNPPP NCGT+NR NPC
Sbjct: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

[Close]

BLAST of CmoCh01G003980 vs. ExPASy TrEMBL
Match: A0A0A0LCJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.9e-33
Identity = 76/119 (63.87%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLN-PTTSDALTSFKP-LNNDTSAAGKYLIGDQDLDSEFLMES 60
           M A+A++IPAA+  MILLL+ P++ DALT+F+P L+N +S  GK ++G++D++ EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           HISRILA S+N+QT+ T +ANKASGGGC RPPRYDSCLG+K NNPPP NC  +NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of CmoCh01G003980 vs. ExPASy TrEMBL
Match: A0A0A0L711 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.2e-30
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 3   AAAVIIPAAMAIMILLLNPTT-SDALTSFKPLNNDTSAA-GKYLIGDQDLDSEFLMESHI 62
           A A++IPAAMA+M+++L PT    ALTSFKPLNN TS    KY++ ++D+ S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SR+LA SQ+F+TS TN+A + S G C RPPRYDSCLG K N PPP+NC TFNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of CmoCh01G003980 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 230.7 bits (587), Expect = 6.4e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60
           MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003980 vs. NCBI nr
Match: KAG6607029.1 (hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036725.1 hypothetical protein SDJN02_00345, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60
           MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQD+DSEFLMESHI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003980 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 5.1e-54
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60
           MAAAAV+IPAAMAIMILLLNPT+SDALT+FKPLNNDTSAAGKYLIGDQD+DSEFLMESHI
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQ+FQTSKTNDANKASGGGC RPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003980 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 110/117 (94.02%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60
           MA AA +IPAAMAIMILLLNP  SDALTSFKPLNNDTSAAGKYLIGDQD+DSEFLMESHI
Sbjct: 1   MATAAAMIPAAMAIMILLLNPINSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQNFQTS TNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003980 vs. NCBI nr
Match: TYK01622.1 (hypothetical protein E5676_scaffold451G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 6.2e-36
Identity = 82/119 (68.91%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLN-PTTSDALTSFKP-LNNDTSAAGKYLIGDQDLDSEFLMES 60
           M A+A +IPAA+  MILLLN P++ +ALT+F+P L+N TS   + ++G++D+D EF+MES
Sbjct: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60

Query: 61  HISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           HISRILA SQNFQT+ T DANKASGGGCGRPPRYDSCLGQK NNPPP NCGT+NR NPC
Sbjct: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

The following BLAST results are available for this feature:

BLAST of CmoCh01G003980 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G927	3.1e-57	100.00	uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1KBP5	2.5e-54	94.87	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]
A0A5D3BS53	3.0e-36	68.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LCJ4	6.9e-33	63.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711	7.2e-30	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]

BLAST of CmoCh01G003980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948338.1	6.4e-57	100.00	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
KAG6607029.1	1.1e-56	99.15	hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998105.1	5.1e-54	94.87	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
XP_023523220.1	1.5e-53	94.02	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]
TYK01622.1	6.2e-36	68.91	hypothetical protein E5676_scaffold451G002320 [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh01G003980 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003980.1	CmoCh01G003980.1	mRNA