CmoCh01G003960 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 1950847 .. 1951415 (+)
RNA-Seq Expression	CmoCh01G003960
Synteny	CmoCh01G003960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCGCCGTCGTCTTCCGTTACCGCCACCACCATGGCTGCAACTATGCCAATGAAACCCACCACCATAGCGGTCGTGATTTTGCTGCTCGTCTCGACCGGTTGCGATGCTTTTGCACTTACCAAACCACTTTTCAACCACACCCAAGGTGAGTTAATTTGCTATTCAAAAATTTGAAAATCCTAAAACCTTTTATGTTTATAGTAAAAGTAGTGTCTTGAATGCCATAGGTCCCGGAAAACACGTCATCGGAGACGATATCGACACCGAGTTTCTTATGGAATCGCATATTAGTAGGGTACTTGCGGAGGAGGATGAGCTTAGGTTTGAAACCATGAGGAGCCCTAACCCCAACATTGCATCGGTGGTCGACTGCGAACGACCGCCACGCTTCGACAGTTGCCTCGGCGAAGGAAAGAACAATCCGCCGTCCGAAAACTGCGATCCCTTCAATCGGGCTAATCCTTGTTGATTAGAATGAAATGAAGAAGAATAAGTAGATATGTTGTTTGGGGTTTACAGCATTTTTAAGGAATTAATAATGTAATGAACACATATTTAGTGCTCAC

mRNA sequence

CTTCCGCCGTCGTCTTCCGTTACCGCCACCACCATGGCTGCAACTATGCCAATGAAACCCACCACCATAGCGGTCGTGATTTTGCTGCTCGTCTCGACCGGTTGCGATGCTTTTGCACTTACCAAACCACTTTTCAACCACACCCAAGGTCCCGGAAAACACGTCATCGGAGACGATATCGACACCGAGTTTCTTATGGAATCGCATATTAGTAGGGTACTTGCGGAGGAGGATGAGCTTAGGTTTGAAACCATGAGGAGCCCTAACCCCAACATTGCATCGGTGGTCGACTGCGAACGACCGCCACGCTTCGACAGTTGCCTCGGCGAAGGAAAGAACAATCCGCCGTCCGAAAACTGCGATCCCTTCAATCGGGCTAATCCTTGTTGATTAGAATGAAATGAAGAAGAATAAGTAGATATGTTGTTTGGGGTTTACAGCATTTTTAAGGAATTAATAATGTAATGAACACATATTTAGTGCTCAC

Coding sequence (CDS)

ATGGCTGCAACTATGCCAATGAAACCCACCACCATAGCGGTCGTGATTTTGCTGCTCGTCTCGACCGGTTGCGATGCTTTTGCACTTACCAAACCACTTTTCAACCACACCCAAGGTCCCGGAAAACACGTCATCGGAGACGATATCGACACCGAGTTTCTTATGGAATCGCATATTAGTAGGGTACTTGCGGAGGAGGATGAGCTTAGGTTTGAAACCATGAGGAGCCCTAACCCCAACATTGCATCGGTGGTCGACTGCGAACGACCGCCACGCTTCGACAGTTGCCTCGGCGAAGGAAAGAACAATCCGCCGTCCGAAAACTGCGATCCCTTCAATCGGGCTAATCCTTGTTGA

Protein sequence

MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC

Homology

[Close]

BLAST of CmoCh01G003960 vs. ExPASy TrEMBL
Match: A0A6J1G8W5 (uncharacterized protein LOC111452043 OS=Cucurbita moschata OX=3662 GN=LOC111452043 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.6e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60
           MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS
Sbjct: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60

Query: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC
Sbjct: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 118

[Close]

BLAST of CmoCh01G003960 vs. ExPASy TrEMBL
Match: A0A6J1K9J3 (uncharacterized protein LOC111492901 OS=Cucurbita maxima OX=3661 GN=LOC111492901 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60
           MAATM MKP TIAVVILLLVST CDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS
Sbjct: 1   MAATMSMKPATIAVVILLLVSTNCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60

Query: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           RVLAEEDELRFETMRSPNPNIASVVDCERPPR+DSCLGEGKNNPPSENCDPFNRANPC
Sbjct: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRYDSCLGEGKNNPPSENCDPFNRANPC 118

[Close]

BLAST of CmoCh01G003960 vs. ExPASy TrEMBL
Match: A0A0A0L9X5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.4e-36
Identity = 80/117 (68.38%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 2   AATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHISR 61
           AAT+ ++ TT+A+V LLLV+ GCDAF  +KP+FN +   GK +IG DIDT+FLMESH+SR
Sbjct: 3   AATLSIR-TTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIG-DIDTDFLMESHVSR 62

Query: 62  VLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           +LA   ELRFETMR+PN N ASVV+CERPPR+DSCLGE ++NPPSENCDP+NRANPC
Sbjct: 63  ILA---ELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of CmoCh01G003960 vs. ExPASy TrEMBL
Match: A0A6J1CP71 (uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013278 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.5e-27
Identity = 70/120 (58.33%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNH-TQGPGKHVIGD-DIDTEFLMESH 60
           MA    M PT +A+ ILL     CDA   +K L N+ T G  K +IGD DI +EFLME H
Sbjct: 1   MATAAVMIPTVMALAILLPNPIDCDALTTSKRLLNNETWGNHKRLIGDEDIGSEFLMELH 60

Query: 61  ISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           +SR+LAE   LRF+TM +PN N+ SV DCERPPR+DSCLGE +N PP+ENC  FNRANPC
Sbjct: 61  LSRILAE--SLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRNTPPAENCGTFNRANPC 118

[Close]

BLAST of CmoCh01G003960 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.8e-25
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGD-DIDTEFLMESHI 60
           MAA   M P  +A++ILLL  T  DA    KPL N T   GK++IGD DID+EFLMESHI
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           SR+LA   +  F+T ++ + N AS   CERPPR+DSCLG+  NNPP ENC  FNR NPC
Sbjct: 61  SRILAGSQD--FQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: XP_022948337.1 (uncharacterized protein LOC111452043 [Cucurbita moschata])

HSP 1 Score: 245.0 bits (624), Expect = 3.3e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60
           MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS
Sbjct: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60

Query: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC
Sbjct: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 118

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: KAG7036723.1 (hypothetical protein SDJN02_00343, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.1 bits (614), Expect = 4.8e-60
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60
           MAATMPMKP TIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDID EFLMESHIS
Sbjct: 1   MAATMPMKPATIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDNEFLMESHIS 60

Query: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC
Sbjct: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 118

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: KAG6607027.1 (hypothetical protein SDJN03_00369, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240.7 bits (613), Expect = 6.2e-60
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60
           MAATMPMKP TIAVVILLLVSTGCDAFA TKPLFNHTQGPGKHVIGDDIDTEFLMESHIS
Sbjct: 58  MAATMPMKPATIAVVILLLVSTGCDAFARTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 117

Query: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC
Sbjct: 118 RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 175

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: XP_022998176.1 (uncharacterized protein LOC111492901 [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60
           MAATM MKP TIAVVILLLVST CDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS
Sbjct: 1   MAATMSMKPATIAVVILLLVSTNCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHIS 60

Query: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           RVLAEEDELRFETMRSPNPNIASVVDCERPPR+DSCLGEGKNNPPSENCDPFNRANPC
Sbjct: 61  RVLAEEDELRFETMRSPNPNIASVVDCERPPRYDSCLGEGKNNPPSENCDPFNRANPC 118

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: XP_022143399.1 (uncharacterized protein LOC111013278 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 70/120 (58.33%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNH-TQGPGKHVIGD-DIDTEFLMESH 60
           MA    M PT +A+ ILL     CDA   +K L N+ T G  K +IGD DI +EFLME H
Sbjct: 1   MATAAVMIPTVMALAILLPNPIDCDALTTSKRLLNNETWGNHKRLIGDEDIGSEFLMELH 60

Query: 61  ISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           +SR+LAE   LRF+TM +PN N+ SV DCERPPR+DSCLGE +N PP+ENC  FNRANPC
Sbjct: 61  LSRILAE--SLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRNTPPAENCGTFNRANPC 118

The following BLAST results are available for this feature:

BLAST of CmoCh01G003960 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8W5	1.6e-61	100.00	uncharacterized protein LOC111452043 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1K9J3	5.7e-59	96.61	uncharacterized protein LOC111492901 OS=Cucurbita maxima OX=3661 GN=LOC111492901...	[more]
A0A0A0L9X5	1.4e-36	68.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1	[more]
A0A6J1CP71	7.5e-27	58.33	uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1KBP5	1.8e-25	56.30	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]

BLAST of CmoCh01G003960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948337.1	3.3e-61	100.00	uncharacterized protein LOC111452043 [Cucurbita moschata]	[more]
KAG7036723.1	4.8e-60	98.31	hypothetical protein SDJN02_00343, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607027.1	6.2e-60	98.31	hypothetical protein SDJN03_00369, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998176.1	1.2e-58	96.61	uncharacterized protein LOC111492901 [Cucurbita maxima]	[more]
XP_022143399.1	1.6e-26	58.33	uncharacterized protein LOC111013278 [Momordica charantia]	[more]

BLAST of CmoCh01G003960 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003960.1	CmoCh01G003960.1	mRNA