CmoCh01G003710 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Plastid movement impaired 2
Location	Cmo_Chr01: 1807324 .. 1809460 (+)
RNA-Seq Expression	CmoCh01G003710
Synteny	CmoCh01G003710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATGCAATGGGAGGAGGATCAAGAAGAAGCAAGAGAACAGCAAAGGTGATGAAAATCAACGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCGTTGTCTCGTGTGCGCTCCGACCTTTGCTCGTCAGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCAGTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTGTCGCCCTACTGGACCCGTGCAAATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTCGATTTGTGGAAAACAGGCGGCATGTGTAGTGGTCAAGCGCGTGAGGTGCGTTCTTTAGCCGTTCTTTAGCTTTTTGAATTTACGTTTTAGTGAAGTGATCAAGCGGGTTGGGTTTAAGAATTCTTTTAAACTAACTTTAGTTAGGTTGATGACCGGAACAACTCCAATTGAGTTCACAAATTAATCTTCCATTTTTGGGTTTTTTTTTTTAATCATTTAAAAATATTTTACTTATCCACCGTACATGTTAGGTAATCTTGGTTAGTCGACCTGAAAATATTTTGAGCTAGTTAAGTTGATGACTTGAACCGACTGGAATTTTTCAGCTCAAAAAATTGAATCGAACCCGACCTTTATGATAGGTAATCTGGATTGGTCATATTCTCGAATCATTTAAACATCCCTAAAGATTCATATTCTTTTGGCGTATTCTCTACTCTTCCGAAGAAATTTTTTTTCATTAAAATAATAATAATAATACACTTTATCAAGGAAAAGAAAAATATTTTAAAGTACTTTGAGTTGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTGTATTTTGAAGTACTTTTTATATCTTAATTAAATTTCAAGAAAATAGTTAATTTATTTTCTTAGATTACATTAATTTAAAAATAATTTATAAAGCATGCGTATATATTTATATATAAAAGATTAAAGTAAATAAAAGATAATTTAAATAAATTAATTAAAAATAAATAAAAATAAAAATAAAAAGAGTGGGGTGGGTATGAGTTTATATTTGACTTACAAAATAAATATATATTTATTGACTTTGATTATAAAAAAAACTTAATAAAAGGGTTTTAGTAAATAATAAATATAATTGAAAAAAAAAAGTCAAAAGTAAATAAACAACACATAAATCTAAAGTGCTTAGTTGGGGACACATCTTTTATAATTTAAAATATTTATTATTATTATTATTTCGGGAAATGAATAGGGAAAATGTTGATGAGGCAATAATATATATATTTTTTGAGATAATATAGTATGGAGAGCTTAAGTTCCACTTGATATATATATATATATATGTAGCATTTGTAAATTTATTTTTAAAAAATAAAATAATTAATCCTTTTGAAATATAAACTAATAATTGTTTCTTAAACCCTAAATATTTGCAGAAAAGAGTGAGCTTTGTGAAACAATGAAGAGGATGGTTCTGCACAATGGCAATGCATTGACCTTTCATTTTGGCTCTCTCTCTCTCTCTAATGTATAGAATGAGTTCGTGTATCCTCGTTCTAGGAATTGATCGATA

mRNA sequence

ATGGGAAATGCAATGGGAGGAGGATCAAGAAGAAGCAAGAGAACAGCAAAGGTGATGAAAATCAACGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCGTTGTCTCGTGTGCGCTCCGACCTTTGCTCGTCAGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCAGTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTGTCGCCCTACTGGACCCGTGCAAATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTCGATTTGTGGAAAACAGGCGGCATGTGTAGTGGTCAAGCGCGTGAGAAAAGAGTGAGCTTTGTGAAACAATGAAGAGGATGGTTCTGCACAATGGCAATGCATTGACCTTTCATTTTGGCTCTCTCTCTCTCTCTAATGTATAGAATGAGTTCGTGTATCCTCGTTCTAGGAATTGATCGATA

Coding sequence (CDS)

ATGGGAAATGCAATGGGAGGAGGATCAAGAAGAAGCAAGAGAACAGCAAAGGTGATGAAAATCAACGGCGAAACCTTCAAGATAAGAACACCAACCACAGCCTTCCAAGTCACCACCCACCATCCAAATCACCTCCTCTATGACTCCCAATCCATCACCCAACTCGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAGCTCAAACCTAAGACCCTCTACTTCCTCCTCCACCTGCCCCCTCTCCCCGGTAGCCATCGCCCGTTGTCTCGTGTGCGCTCCGACCTTTGCTCGTCAGCCTCCGACCGCCTCGAGTGTCTTATGCTCTCTCGTCGATCAGTCTCCGACCTCCAATCCTTTCGGTTGGATCCCGATGGGATGTCGACTGCCTGTCGCCCTACTGGACCCGTGCAAATCAAGCTTCGAGTGCCGAGGGAAGAATTTGAGAGGCTGATGAAGGAAAGTAAGAGCAAGGTAGAGGCAGCGGAGAGGATTGTCGATTTGTGGAAAACAGGCGGCATGTGTAGTGGTCAAGCGCGTGAGAAAAGAGTGAGCTTTGTGAAACAATGA

Protein sequence

MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSFRLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAREKRVSFVKQ

Homology

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BLAST of CmoCh01G003710 vs. ExPASy Swiss-Prot
Match: Q6NLC8 (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 84/209 (40.19%), Postives = 121/209 (57.89%), Query Frame = 0


Query: 5   MGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDP 64
           MG      ++ AKVMKI+GETF+I+TP TA +VT  +P ++L DSQ++   G+R+KPL+P
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLP--------GSHRPLSRVRSDLCSSASDRLECLMLSRRSVSD 124
           +  LKPK  YFL+ LP LP         +  P  RV S +   A +RL+ LMLSRR+VSD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 125 LQSFRLD-PDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEA-AERIVDLW----- 184
           +   R D  DG      P G   ++LR+PR +  +LM+E+ +   A AE+I+ ++     
Sbjct: 121 VTIGRSDGGDGFGPELGP-GHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMERSG 180

Query: 185 KTGGMCSG------------QAREKRVSF 187
           + GG   G            +AREK+VSF
Sbjct: 181 ELGGGRGGVDGRRELGSGEIKAREKQVSF 208

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BLAST of CmoCh01G003710 vs. ExPASy TrEMBL
Match: A0A6J1G9F9 (uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC111452165 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.5e-101
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

Query: 181 EKRVSFVKQ 190
           EKRVSFVKQ
Sbjct: 181 EKRVSFVKQ 189

[Close]

BLAST of CmoCh01G003710 vs. ExPASy TrEMBL
Match: A0A6J1K9N3 (uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC111492930 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.6e-98
Identity = 184/189 (97.35%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMG GSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSI QLGLRAK
Sbjct: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRS+SDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTA RPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

Query: 181 EKRVSFVKQ 190
           EKRVSFVK+
Sbjct: 181 EKRVSFVKR 189

[Close]

BLAST of CmoCh01G003710 vs. ExPASy TrEMBL
Match: A0A0A0L7W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G368690 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.8e-52
Identity = 118/197 (59.90%), Postives = 138/197 (70.05%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNA+G GSRR KRT KVMKINGET KI  PTTA++VT+H+P+HLLY+S+S+   GLRAK
Sbjct: 1   MGNAIGRGSRRKKRTTKVMKINGETIKITLPTTAYEVTSHYPSHLLYESKSLKLFGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCS-SASDRLECLMLSRRSVSDLQS 120
           PLDPH  L+PKTLYFLL LP LP  H  L R  SDL + SASDRLECL+LSRRS+SDLQ+
Sbjct: 61  PLDPHCHLEPKTLYFLLQLPTLPRDHCSLRRTCSDLHNLSASDRLECLLLSRRSLSDLQT 120

Query: 121 FRLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVD------------ 180
            R DP   ST      PVQ+K ++PR EFERLMKE K+KVE  +RIVD            
Sbjct: 121 LRFDPQRSSTDDGAAKPVQVKFQLPRAEFERLMKECKNKVEVTKRIVDYCARSRDNVYGN 180

[Close]

BLAST of CmoCh01G003710 vs. ExPASy TrEMBL
Match: A0A5A7V2M4 (Putative Encodes a protein whose expression is responsive to nematode infection OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00470 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.3e-44
Identity = 98/149 (65.77%), Postives = 114/149 (76.51%), Query Frame = 0


Query: 19  MKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLKPKTLYFLLH 78
           MKINGETFKI  PTTA++VT+H+PNHLLY+S+S+ Q GLRAKPLDPH QL+PKTLYFLL 
Sbjct: 1   MKINGETFKITLPTTAYEVTSHYPNHLLYESKSLNQFGLRAKPLDPHCQLRPKTLYFLLQ 60

Query: 79  LPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSFRLDPDGMSTACRPTGPVQ 138
           LP L G  R L R  SDL  SASDRLECL+LSRRSVSDLQ+ R DP   S        VQ
Sbjct: 61  LPTLYGVDRSLRRTCSDLHLSASDRLECLLLSRRSVSDLQTLRFDPQRSSIHDGAAKSVQ 120

Query: 139 IKLRVPREEFERLMKESKSKVEAAERIVD 168
           +K ++PR EFERLMKE K+ VE  ++IVD
Sbjct: 121 VKFQLPRAEFERLMKECKNNVEVTKKIVD 149

[Close]

BLAST of CmoCh01G003710 vs. ExPASy TrEMBL
Match: A0A1S3C4W5 (uncharacterized protein At1g66480 OS=Cucumis melo OX=3656 GN=LOC103496878 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 6.3e-44
Identity = 97/149 (65.10%), Postives = 113/149 (75.84%), Query Frame = 0


Query: 19  MKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDPHHQLKPKTLYFLLH 78
           MKINGETFKI  PTTA++VT+H+PNHLLY+S+S+ Q GLRAKPLDPH QL+PKTLYFLL 
Sbjct: 1   MKINGETFKITLPTTAYEVTSHYPNHLLYESKSLNQFGLRAKPLDPHCQLRPKTLYFLLQ 60

Query: 79  LPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSFRLDPDGMSTACRPTGPVQ 138
           LP L G  R L R  SDL  SASDRLECL+LSRRSVSDLQ+ R DP            VQ
Sbjct: 61  LPTLYGVDRSLRRTCSDLHLSASDRLECLLLSRRSVSDLQTLRFDPQRSLIHDGAAKSVQ 120

Query: 139 IKLRVPREEFERLMKESKSKVEAAERIVD 168
           +K ++PR EFERLMKE K+ VE  ++IVD
Sbjct: 121 VKFQLPRAEFERLMKECKNNVEVTKKIVD 149

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: XP_022948507.1 (uncharacterized protein At1g66480-like [Cucurbita moschata])

HSP 1 Score: 377.9 bits (969), Expect = 5.2e-101
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

Query: 181 EKRVSFVKQ 190
           EKRVSFVKQ
Sbjct: 181 EKRVSFVKQ 189

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: XP_022998216.1 (uncharacterized protein At1g66480-like [Cucurbita maxima])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 184/189 (97.35%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMG GSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSI QLGLRAK
Sbjct: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSINQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRS+SDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTA RPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

Query: 181 EKRVSFVKQ 190
           EKRVSFVK+
Sbjct: 181 EKRVSFVKR 189

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: KAG6607003.1 (hypothetical protein SDJN03_00345, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

Query: 181 EKR 184
           E R
Sbjct: 181 EVR 183

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: KAG7036702.1 (hypothetical protein SDJN02_00322, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362.8 bits (930), Expect = 1.7e-96
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of CmoCh01G003710 vs. NCBI nr
Match: XP_023524596.1 (uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 6.9e-93
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGNAMG GSRRSKRTAKVMKINGETFKIRTPTTA QVTTHHPNHLLYDSQSITQLGLRAK
Sbjct: 1   MGNAMGRGSRRSKRTAKVMKINGETFKIRTPTTASQVTTHHPNHLLYDSQSITQLGLRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRS+SDLQSF
Sbjct: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSLSDLQSF 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLWKTGGMCSGQAR 180
           RLDPDGMSTA RPTGPVQIKLRVPREEFERLMKESKSKVEA ERIVDLWKTGGMCSGQAR
Sbjct: 121 RLDPDGMSTASRPTGPVQIKLRVPREEFERLMKESKSKVEAVERIVDLWKTGGMCSGQAR 180

Query: 181 EKR 184
           E R
Sbjct: 181 EVR 183

[Close]

BLAST of CmoCh01G003710 vs. TAIR 10
Match: AT1G66480.1 (plastid movement impaired 2 )

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 84/209 (40.19%), Postives = 121/209 (57.89%), Query Frame = 0


Query: 5   MGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDP 64
           MG      ++ AKVMKI+GETF+I+TP TA +VT  +P ++L DSQ++   G+R+KPL+P
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLP--------GSHRPLSRVRSDLCSSASDRLECLMLSRRSVSD 124
           +  LKPK  YFL+ LP LP         +  P  RV S +   A +RL+ LMLSRR+VSD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 125 LQSFRLD-PDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEA-AERIVDLW----- 184
           +   R D  DG      P G   ++LR+PR +  +LM+E+ +   A AE+I+ ++     
Sbjct: 121 VTIGRSDGGDGFGPELGP-GHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMERSG 180

Query: 185 KTGGMCSG------------QAREKRVSF 187
           + GG   G            +AREK+VSF
Sbjct: 181 ELGGGRGGVDGRRELGSGEIKAREKQVSF 208

[Close]

BLAST of CmoCh01G003710 vs. TAIR 10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection. )

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-29
Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++GG     K+T KVMKI+GETFK++TP TA +V    P H+L DS+S+   G RAK
Sbjct: 1   MGNSLGG-----KKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PL+   +L+ K LYF++     P    P  RVRS +  SA +RLE LML+RRS SDL S 
Sbjct: 61  PLEAKQRLEAKRLYFVVE----PVKECPPRRVRSGIHVSAKERLESLMLARRSSSDL-SI 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW 170
              P G +T        ++K+R+P+ E E+L+KE  ++ EA ++I  L+
Sbjct: 121 LKPPGGWTTEEEEGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALF 159

[Close]

BLAST of CmoCh01G003710 vs. TAIR 10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-26
Identity = 77/208 (37.02%), Postives = 117/208 (56.25%), Query Frame = 0


Query: 5   MGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAKPLDP 64
           MG      +   KVMKI+G+ F+++TP TA   T  +P  +L DS+++ +LG+RAKPL+P
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 65  HHQLKPKTLYFLLHLPPLPGSHR-PLSRVRS-DLCSSASDRLECLMLSRRSVSDLQSFRL 124
           +  LKP   YFL+ LPP+   ++ P  RV S ++   A +RLE LMLSRR+VSD+ + R 
Sbjct: 61  NQILKPNHTYFLVDLPPVDKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGAARS 120

Query: 125 DPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDLW--KTGGMCSG--- 184
           D  G        G  +++LR+PR +  +LM+ES    E A +I+  +   +GG+  G   
Sbjct: 121 DVVGDGP---ELGHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYMESSGGIQGGRDN 180

Query: 185 ----------------QAREKRVSFVKQ 190
                           +AREK VSF ++
Sbjct: 181 DGLRQRLGIAEINNHYKAREKHVSFAEK 205

[Close]

BLAST of CmoCh01G003710 vs. TAIR 10
Match: AT1G71015.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 2.9e-25
Identity = 68/168 (40.48%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 1   MGNAMGGGSRRSKRTAKVMKINGETFKIRTPTTAFQVTTHHPNHLLYDSQSITQLGLRAK 60
           MGN++G     +K+TA +M INGE+FK++TP  A  V    P H+L +S+++ +LG+RAK
Sbjct: 1   MGNSLG-----TKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAK 60

Query: 61  PLDPHHQLKPKTLYFLLHLPPLPGSHRPLSRVRSDLCSSASDRLECLMLSRRSVSDLQSF 120
           PL+PH  L+ K +YF++ LP       P  RVRS +  SA +RLE L LSRRS SDL   
Sbjct: 61  PLEPHQNLESKRIYFMVELPRTWKERTP-RRVRSGIQMSAKERLENLKLSRRSSSDLSVM 120

Query: 121 RLDPDGMSTACRPTGPVQIKLRVPREEFERLMKESKSKVEAAERIVDL 169
           +   + ++   R      +KL++P+ + E+L KES+S  + + +I  L
Sbjct: 121 KKKTE-VNDEEREVS--SVKLKLPKWKIEKLRKESESGSDFSNKITQL 159

The following BLAST results are available for this feature:

BLAST of CmoCh01G003710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLC8	1.6e-28	40.19	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 P...	[more]

BLAST of CmoCh01G003710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9F9	2.5e-101	100.00	uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1K9N3	7.6e-98	97.35	uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC1114929...	[more]
A0A0A0L7W0	4.8e-52	59.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G368690 PE=4 SV=1	[more]
A0A5A7V2M4	1.3e-44	65.77	Putative Encodes a protein whose expression is responsive to nematode infection ...	[more]
A0A1S3C4W5	6.3e-44	65.10	uncharacterized protein At1g66480 OS=Cucumis melo OX=3656 GN=LOC103496878 PE=4 S...	[more]

BLAST of CmoCh01G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948507.1	5.2e-101	100.00	uncharacterized protein At1g66480-like [Cucurbita moschata]	[more]
XP_022998216.1	1.6e-97	97.35	uncharacterized protein At1g66480-like [Cucurbita maxima]	[more]
KAG6607003.1	1.0e-96	99.45	hypothetical protein SDJN03_00345, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036702.1	1.7e-96	100.00	hypothetical protein SDJN02_00322, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023524596.1	6.9e-93	96.72	uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G003710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66480.1	1.1e-29	40.19	plastid movement impaired 2	[more]
AT2G01340.1	2.0e-29	44.38	Encodes a protein whose expression is responsive to nematode infection.	[more]
AT5G37840.1	1.2e-26	37.02	BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT...	[more]
AT1G71015.1	2.9e-25	40.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 1..173
None	No IPR available	PANTHER	PTHR33148:SF3	PLASTID MOVEMENT IMPAIRED PROTEIN	coord: 1..173
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..114 e-value: 6.5E-19 score: 69.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003710.1	CmoCh01G003710.1	mRNA