CmoCh01G003200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	U1 small nuclear ribonucleoprotein A-like
Location	Cmo_Chr01: 1525479 .. 1528406 (+)
RNA-Seq Expression	CmoCh01G003200
Synteny	CmoCh01G003200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCTCTGTGAGCGGCGGTGGAATTGCATGTACCGGACCGAGCCGTCGTTTTCTGAAGTCGACCGTCGTTGTGTTCTTTCGACGTTTGTGGTTTAGCTGTTTAAGCATTTCTATTCGGCGGACGGTGGTGTAAGAAATGGCGGAGGTCAACAGCACTGGCAATGAGATTCCTCCGAACATGACCATCTACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGGTATTTTTGAGGGGAGGGGAATGTCGAAGCTTCTTTAATAGTCTGAAATGTGTTGTAATTTTTATTGTTTTCTTCTTTGTAAGAGCAGAATTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTATTGGCTTTCAAAACCTTGAAGCACAAAGGACAGGCTTGGGTTGTCTTCGAAGAAGTATCTTCTGCCACTAATGCGCTTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGGTAATGTGCTTACTAGAACCTACTAATTCTTGCAGTGAAAGGGTGGTTATCGTCGATAAAGAATTGAAATTGATTGCTCCAATTTTAAATTGTTTCTTGCAATTTCTTGGCTCAAACGGAGGGTTATACTAATGTGAGTCAATGTGGAAATTATGAAAGTTCTGATAGATTCTTCTGAGTAACCAAATTGGAACTTTGTTTGGGTTATGAATCATCTAGGTAGTTGAGATTTACTCGCACATGGCTAGGAAATAATGTGATTGCTTGCAGATTGCTGTACTGATGGTGTGGTCTACTATGAATATTCATAGCTGATTTCATTTTAGCAAGGTTAAAGGACAATTATTGTTTGAATGATCAATACCCTGAGCAGTGATCTTGAATGATTACTTCTTAAAAATATCACATTGCAGATGTTTGAGTATACTCCTGAGCTTTATTACTTTGGTTCTTAATAGTTTGACACACATCATATGGTTGTCAAACGTGGCTTCTGTCAATCTTGTGATAGTTCTATATCTGTTGAGCATTTCTGGTTTGTAGGTCTGGTGGCTAACATCTACGTTCTCTATGCATTTTTGTACGGTGTCGTAGGCTTTGTATCTTCTCCATGTTATAAAGTGCGACCAATTTTTTGTATCATTTGTTGCTCTGTTCTATTATTCGTCTTTTGTTAGCTTGACGAAGTTTGGTGTAATACGAAGTTAAGTGTTGTTGATTTGCAATCATGTAGAGGATACAATATGCAAAGACGAAATCGGATGTTATCTCGAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCATGAGGAGAAGGGTATAATTTGTCTCCATTTTCTATTTGACAATTCAAATTCAAATGTGTCTAAATTAGCTTGGTTCATGAAGATCTTTTTCTTCAGTATTTGATACAATAGTAGAGTGTTGTAGGTTTTTACTTTAGGTATTTTATTCAAATCTATTGGAGCAGTATTGACATCTTAGGGAAGTAACTTTTCAGTAAGTTCTTATAAAAAAAAAAAAAAAGGAACTTTTTTTCAGAAAGTAAGGAAAATGTTGTCTTATAGTTTATGTAGCAGTCTTTTGATCTAAGATCTGTCCATTCTTTCGATGTGGTAGGGAGGAAGAAGAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTATGAATCCTGCTTTTGGTGGAGCATATGGTGCAACAGCGGTAAGTATCTCTATTTAATTCCTAAAGTTTGGTCTTTGATAAATTTTATAAACTTTTATATCTATAATATATTCATTTCTAGATTTGAGCCTCATATACATAGTTTAATTCTCCAACAAAGACGATCAAGATATTATATGTTCACCTGTTGTTGAAAAATGTATTCTAAGTGCTTCACTGATATGATATGGCTGACATGATTATCAACTATAAGATTATAGAGAATGAGAGTATTAGAATGTAATAACTAATAAAAGGTAGAACTTCACTACTTTAGGTTAATTTTGTTCATTAAAAATGATTCGCTCTCGACCTTTTTCGTTTCTCACTCTCCTCACTATATTAAGAACGATTCTTAATTTGTATGCTATTCATTGACATAGGGCACTTATTTCTTTTAACTTGCTCCAGGGTAGTAAGAGTCATTTTTGTTGTTCTTTTTGAATTTATCCGTCTTTTCCTTGTTTCATACAATCATGCTTGTTAAAGAACTGTAACGACCCTAAATTTTATCAGATGTTCCCTTAAGGTCGTTACAAGAACCCTTTGCCAATTAATTCATCATATTTATAATTATGGTACTCGTTATGTTTATTTATTGGAAATTGTATGTTGCTAACGCAATCTCTCTTTCGTTTCCTCCCCTGAAAATGGTGCAGCACTCTCAAGTACCTTATTCTGGTGGAGTTATGGTGCCAGAAGCACCAGCCCCACCCAATAGCATTTTGTTTGTACAAAATCTTCCCCATGAAACGACTCCAATGATGCTACAAATGCTGTTCTGTCAGTACCCTGGTTTTAAGGAGGTTCGTATGATCGAAGCAAAGCCAGGTATTGCATTTGTAGAGTACGCCGATGAGGTACAATCGACAGTCGCCATGCAAGCGCTACAAGGTTTCAAGATGAACCCGCAAAACTCGATGTTGATAACTTATGCAAAGAAATAGGATAGCAAATCTTGGTCTCTTCCCTGTATGGAAAGCCAACTGCTATCTTTTGATTCTCAGTACAGGAGATCGTGTGTAAAATACTGTCATCATGAACTTGCTGAAAATTCTATTCAGATCAGTTTTCTTAACTAGGAATAGAACGGATCTCGGATCCCATGAACACAGCGGTTGCCATGATTATCGTTGAACTCGTAGTAAAGTTTGATTTTCATTATCATATTTTGTTCTTGTAGTAAAAAAAAAATAAACTAAAAGCTTTTATGAATATGAGATTGAAG

mRNA sequence

GACCTCTGTGAGCGGCGGTGGAATTGCATGTACCGGACCGAGCCGTCGTTTTCTGAAGTCGACCGTCGTTGTGTTCTTTCGACGTTTGTGGTTTAGCTGTTTAAGCATTTCTATTCGGCGGACGGTGGTGTAAGAAATGGCGGAGGTCAACAGCACTGGCAATGAGATTCCTCCGAACATGACCATCTACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGAATTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTATTGGCTTTCAAAACCTTGAAGCACAAAGGACAGGCTTGGGTTGTCTTCGAAGAAGTATCTTCTGCCACTAATGCGCTTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGAGGATACAATATGCAAAGACGAAATCGGATGTTATCTCGAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCATGAGGAGAAGGGGAGGAAGAAGAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTATGAATCCTGCTTTTGGTGGAGCATATGGTGCAACAGCGCACTCTCAAGTACCTTATTCTGGTGGAGTTATGGTGCCAGAAGCACCAGCCCCACCCAATAGCATTTTGTTTGTACAAAATCTTCCCCATGAAACGACTCCAATGATGCTACAAATGCTGTTCTGTCAGTACCCTGGTTTTAAGGAGGTTCGTATGATCGAAGCAAAGCCAGGTATTGCATTTGTAGAGTACGCCGATGAGGTACAATCGACAGTCGCCATGCAAGCGCTACAAGGTTTCAAGATGAACCCGCAAAACTCGATGTTGATAACTTATGCAAAGAAATAGGATAGCAAATCTTGGTCTCTTCCCTGTATGGAAAGCCAACTGCTATCTTTTGATTCTCAGTACAGGAGATCGTGTGTAAAATACTGTCATCATGAACTTGCTGAAAATTCTATTCAGATCAGTTTTCTTAACTAGGAATAGAACGGATCTCGGATCCCATGAACACAGCGGTTGCCATGATTATCGTTGAACTCGTAGTAAAGTTTGATTTTCATTATCATATTTTGTTCTTGTAGTAAAAAAAAAATAAACTAAAAGCTTTTATGAATATGAGATTGAAG

Coding sequence (CDS)

ATGGCGGAGGTCAACAGCACTGGCAATGAGATTCCTCCGAACATGACCATCTACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGAATTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTATTGGCTTTCAAAACCTTGAAGCACAAAGGACAGGCTTGGGTTGTCTTCGAAGAAGTATCTTCTGCCACTAATGCGCTTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGAGGATACAATATGCAAAGACGAAATCGGATGTTATCTCGAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCATGAGGAGAAGGGGAGGAAGAAGAAAGAGCAGCATGATGCTAATCAAGCTGGGATGGGTATGAATCCTGCTTTTGGTGGAGCATATGGTGCAACAGCGCACTCTCAAGTACCTTATTCTGGTGGAGTTATGGTGCCAGAAGCACCAGCCCCACCCAATAGCATTTTGTTTGTACAAAATCTTCCCCATGAAACGACTCCAATGATGCTACAAATGCTGTTCTGTCAGTACCCTGGTTTTAAGGAGGTTCGTATGATCGAAGCAAAGCCAGGTATTGCATTTGTAGAGTACGCCGATGAGGTACAATCGACAGTCGCCATGCAAGCGCTACAAGGTTTCAAGATGAACCCGCAAAACTCGATGTTGATAACTTATGCAAAGAAATAG

Protein sequence

MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYAKK

Homology

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BLAST of CmoCh01G003200 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.3e-96
Identity = 186/249 (74.70%), Postives = 209/249 (83.94%), Query Frame = 0


Query: 1   MAEVN-STGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N   G+E+ PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKG 120
           AWVVF+   SA+ A+ +M  FPFYDK MRIQYAKTKSDV++K+DGTFVPREKRKRHEEKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEQHDANQAGMGMNPAFGGAYGATAH-SQVPYSGGVM--VPEAPAPPNSILFVQ 180
              +KK + HD+ Q GM MN A+ G YGA    SQVPY GG+   +PEAPAPPN+ILFVQ
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQN 240
           NLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ADE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

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BLAST of CmoCh01G003200 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 8.5e-91
Identity = 175/239 (73.22%), Postives = 203/239 (84.94%), Query Frame = 0


Query: 9   NEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGRKK---KEQ 128
           SAT AL+ MQ FPF++KPMRIQYAKTKSD+I+K+DGTFVPRE+RKR++EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDANQAGMGMNPAFGGAYGATAHSQVPYSGG--VMVPEAPAPPNSILFVQNLPHETTPMM 188
           HD +Q G+G+N A+ G YGA   SQ+P++G   VM+PE    PN+ILFVQNLPHETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRM+EAKPGIAFVEY DE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of CmoCh01G003200 vs. ExPASy Swiss-Prot
Match: Q0DKM4 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 8.5e-91
Identity = 175/239 (73.22%), Postives = 203/239 (84.94%), Query Frame = 0


Query: 9   NEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGRKK---KEQ 128
           SAT AL+ MQ FPF++KPMRIQYAKTKSD+I+K+DGTFVPRE+RKR++EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDANQAGMGMNPAFGGAYGATAHSQVPYSGG--VMVPEAPAPPNSILFVQNLPHETTPMM 188
           HD +Q G+G+N A+ G YGA   SQ+P++G   VM+PE    PN+ILFVQNLPHETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRM+EAKPGIAFVEY DE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of CmoCh01G003200 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.3e-72
Identity = 139/233 (59.66%), Postives = 184/233 (78.97%), Query Frame = 0


Query: 10  EIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           +IPPN +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD ++K++GTFVP++K+++ EEK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           +      P+   A G +A++ VP        +   PPN+ILF+QNLPHETT MMLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RMI+AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of CmoCh01G003200 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.5e-71
Identity = 137/233 (58.80%), Postives = 179/233 (76.82%), Query Frame = 0


Query: 10  EIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           +IPPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD ++K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           Q  M          GAT  + +P        +   PPN+ILF+ NLP ET  MMLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RMIEAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of CmoCh01G003200 vs. ExPASy TrEMBL
Match: A0A6J1K6I0 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC111492748 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 3.9e-131
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. ExPASy TrEMBL
Match: A0A6J1GA71 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC111452325 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 3.9e-131
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. ExPASy TrEMBL
Match: A0A5D3E0R3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001140 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 6.9e-128
Identity = 233/242 (96.28%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. ExPASy TrEMBL
Match: A0A1S3BYG3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 6.9e-128
Identity = 233/242 (96.28%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. ExPASy TrEMBL
Match: A0A0A0KWK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.5e-127
Identity = 232/242 (95.87%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY+DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. NCBI nr
Match: XP_022948748.1 (U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U1 small nuclear ribonucleoprotein A-like [Cucurbita maxima] >XP_023524504.1 U1 small nuclear ribonucleoprotein A [Cucurbita pepo subsp. pepo] >KAG7036660.1 U1 small nuclear ribonucleoprotein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 477.2 bits (1227), Expect = 8.1e-131
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. NCBI nr
Match: XP_038906378.1 (U1 small nuclear ribonucleoprotein A [Benincasa hispida])

HSP 1 Score: 468.4 bits (1204), Expect = 3.8e-128
Identity = 234/242 (96.69%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGAT HSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATVHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. NCBI nr
Match: XP_008454331.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 466.5 bits (1199), Expect = 1.4e-127
Identity = 233/242 (96.28%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. NCBI nr
Match: XP_011652939.1 (U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical protein Csa_014424 [Cucumis sativus])

HSP 1 Score: 465.3 bits (1196), Expect = 3.2e-127
Identity = 232/242 (95.87%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY+DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CmoCh01G003200 vs. NCBI nr
Match: KAA0044384.1 (U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 461.8 bits (1187), Expect = 3.5e-126
Identity = 233/243 (95.88%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLE-ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           MAEV +TGNE+PPNMTIYINNLNEKIKLE ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEAELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKG 120
           AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRHEEKG
Sbjct: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120

Query: 121 RKKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180
           RKKKEQHDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET
Sbjct: 121 RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180

Query: 181 TPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITY 240
           TPMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITY
Sbjct: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY 240

Query: 241 AKK 243
           AKK
Sbjct: 241 AKK 243

[Close]

BLAST of CmoCh01G003200 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 186/249 (74.70%), Postives = 209/249 (83.94%), Query Frame = 0


Query: 1   MAEVN-STGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N   G+E+ PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKG 120
           AWVVF+   SA+ A+ +M  FPFYDK MRIQYAKTKSDV++K+DGTFVPREKRKRHEEKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEQHDANQAGMGMNPAFGGAYGATAH-SQVPYSGGVM--VPEAPAPPNSILFVQ 180
              +KK + HD+ Q GM MN A+ G YGA    SQVPY GG+   +PEAPAPPN+ILFVQ
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQN 240
           NLPHETTPM+LQMLFCQY GFKEVRMIEAKPGIAFVE+ADE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]

BLAST of CmoCh01G003200 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 273.5 bits (698), Expect = 1.7e-73
Identity = 139/233 (59.66%), Postives = 184/233 (78.97%), Query Frame = 0


Query: 10  EIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           +IPPN +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD ++K++GTFVP++K+++ EEK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           +      P+   A G +A++ VP        +   PPN+ILF+QNLPHETT MMLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RMI+AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of CmoCh01G003200 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 268.5 bits (685), Expect = 5.3e-72
Identity = 137/233 (58.80%), Postives = 179/233 (76.82%), Query Frame = 0


Query: 10  EIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           +IPPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD ++K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           Q  M          GAT  + +P        +   PPN+ILF+ NLP ET  MMLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RMIEAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of CmoCh01G003200 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.8 bits (678), Expect = 3.5e-71
Identity = 139/238 (58.40%), Postives = 181/238 (76.05%), Query Frame = 0


Query: 10  EIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           +IPPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD ++K++G+FVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPA-----PPNSILFVQNLPHETTPMML 189
           Q  M          GAT  + +P       P  P+     PPN+ILF+ NLP ET  MML
Sbjct: 125 QPSM--------PNGATTQNGMP------PPFQPSGQDTMPPNNILFIHNLPIETNSMML 184

Query: 190 QMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           Q+LF QYPGFKE+RMIEAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of CmoCh01G003200 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-59
Identity = 116/202 (57.43%), Postives = 153/202 (75.74%), Query Frame = 0


Query: 41  QFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVIS 100
           +FG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRIQYAK+KSD ++
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 101 KSDGTFVPREKRKRHEEKGRKKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVP 160
           K++G+FVP+EK+ + EEK  +K+   +  Q  M          GAT  + +P        
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQNGMPVPPFQPSG 126

Query: 161 EAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVA 220
           +   PPN+ILF+ NLP ET  MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+VQS++A
Sbjct: 127 QDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMA 186

Query: 221 MQALQGFKMNPQNSMLITYAKK 243
           MQALQGFK+ PQN M++++AKK
Sbjct: 187 MQALQGFKITPQNPMVVSFAKK 200

The following BLAST results are available for this feature:

BLAST of CmoCh01G003200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39244	2.3e-96	74.70	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]
A2Y0J7	8.5e-91	73.22	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]
Q0DKM4	8.5e-91	73.22	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
O22922	2.3e-72	59.66	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
Q8H1S6	7.5e-71	58.80	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]

BLAST of CmoCh01G003200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K6I0	3.9e-131	100.00	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GA71	3.9e-131	100.00	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5D3E0R3	6.9e-128	96.28	U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BYG3	6.9e-128	96.28	U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=...	[more]
A0A0A0KWK4	1.5e-127	95.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1	[more]

BLAST of CmoCh01G003200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948748.1	8.1e-131	100.00	U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U...	[more]
XP_038906378.1	3.8e-128	96.69	U1 small nuclear ribonucleoprotein A [Benincasa hispida]	[more]
XP_008454331.1	1.4e-127	96.28	PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 sm...	[more]
XP_011652939.1	3.2e-127	95.87	U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical ...	[more]
KAA0044384.1	3.5e-126	95.88	U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh01G003200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47580.1	1.6e-97	74.70	spliceosomal protein U1A	[more]
AT2G30260.1	1.7e-73	59.66	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.1	5.3e-72	58.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	3.5e-71	58.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.3	1.0e-59	57.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..90 e-value: 1.4E-13 score: 61.1 coord: 169..238 e-value: 5.0E-10 score: 49.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..87 e-value: 1.6E-10 score: 40.6 coord: 170..230 e-value: 5.8E-13 score: 48.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..94 score: 14.538761
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 168..242 score: 12.287449
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 157..242 e-value: 1.4E-20 score: 75.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..115 e-value: 4.3E-31 score: 109.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..132
None	No IPR available	PANTHER	PTHR10501:SF46	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 6..242
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 6..242
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 166..238 e-value: 4.99108E-38 score: 125.759
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 16..93 e-value: 5.52531E-51 score: 158.846
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003200.1	CmoCh01G003200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0003676	nucleic acid binding