CmoCh01G003070 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G003070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GATA zinc finger domain-containing protein 8-like
Location	Cmo_Chr01: 1467689 .. 1468321 (+)
RNA-Seq Expression	CmoCh01G003070
Synteny	CmoCh01G003070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACAACCTCAAATCTCTACAATCTTCCATTACCGACGACAACAACAAGAACAACAACAACCTAGTCGGTAACAATGGCAACAATGGCGTCGCCCCTCCTAAGAACACGACGAAGAAGAAGAACAAGAGCCTTAACATTCTCAGGGTGGCTTTGATGCTCCTCCGCCGCCGCTCCAGCAAGCCCAATGCTGCTTCTGTTGAGGTTGCCTCTAAGGGCATGTGGAACCGCCTTGTTGCCTCCATCCGCCCTTTACATGTCCAAAGCAATCACTCACCTCAACATCCTCAACCCATTATTGTACCCTCCATGCCCGACGCCACCACGTTACGCGCCTCGCCCTCCATCGACTGCTTCGAGGACGTTAAGTCGTCCTCCGCTTCTTCCGTTGATGGCATGAGCCGATACGCTTCCGCCATCAATCTCCAAGAGCTCGACCAAAACAATGATGACGACGACGACAATAACGATAACGATAATCAAGCCGAGCCAAAAATTGACGAGGATGAGAATGCGGATGATATGATCGATGCAAAAGCAGAAATGTTCATAGCTCAATTCTATGAACAAATGAGGCGCTCGAACTCCGACGTTCGTTACCTAGAGATGATCAAGAGATCGATCCGCTAA

mRNA sequence

ATGGCAGACAACCTCAAATCTCTACAATCTTCCATTACCGACGACAACAACAAGAACAACAACAACCTAGTCGGTAACAATGGCAACAATGGCGTCGCCCCTCCTAAGAACACGACGAAGAAGAAGAACAAGAGCCTTAACATTCTCAGGGTGGCTTTGATGCTCCTCCGCCGCCGCTCCAGCAAGCCCAATGCTGCTTCTGTTGAGGTTGCCTCTAAGGGCATGTGGAACCGCCTTGTTGCCTCCATCCGCCCTTTACATGTCCAAAGCAATCACTCACCTCAACATCCTCAACCCATTATTGTACCCTCCATGCCCGACGCCACCACGTTACGCGCCTCGCCCTCCATCGACTGCTTCGAGGACGTTAAGTCGTCCTCCGCTTCTTCCGTTGATGGCATGAGCCGATACGCTTCCGCCATCAATCTCCAAGAGCTCGACCAAAACAATGATGACGACGACGACAATAACGATAACGATAATCAAGCCGAGCCAAAAATTGACGAGGATGAGAATGCGGATGATATGATCGATGCAAAAGCAGAAATGTTCATAGCTCAATTCTATGAACAAATGAGGCGCTCGAACTCCGACGTTCGTTACCTAGAGATGATCAAGAGATCGATCCGCTAA

Coding sequence (CDS)

ATGGCAGACAACCTCAAATCTCTACAATCTTCCATTACCGACGACAACAACAAGAACAACAACAACCTAGTCGGTAACAATGGCAACAATGGCGTCGCCCCTCCTAAGAACACGACGAAGAAGAAGAACAAGAGCCTTAACATTCTCAGGGTGGCTTTGATGCTCCTCCGCCGCCGCTCCAGCAAGCCCAATGCTGCTTCTGTTGAGGTTGCCTCTAAGGGCATGTGGAACCGCCTTGTTGCCTCCATCCGCCCTTTACATGTCCAAAGCAATCACTCACCTCAACATCCTCAACCCATTATTGTACCCTCCATGCCCGACGCCACCACGTTACGCGCCTCGCCCTCCATCGACTGCTTCGAGGACGTTAAGTCGTCCTCCGCTTCTTCCGTTGATGGCATGAGCCGATACGCTTCCGCCATCAATCTCCAAGAGCTCGACCAAAACAATGATGACGACGACGACAATAACGATAACGATAATCAAGCCGAGCCAAAAATTGACGAGGATGAGAATGCGGATGATATGATCGATGCAAAAGCAGAAATGTTCATAGCTCAATTCTATGAACAAATGAGGCGCTCGAACTCCGACGTTCGTTACCTAGAGATGATCAAGAGATCGATCCGCTAA

Protein sequence

MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRSSKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAKAEMFIAQFYEQMRRSNSDVRYLEMIKRSIR

Homology

[Close]

BLAST of CmoCh01G003070 vs. ExPASy TrEMBL
Match: A0A6J1GBN8 (GATA zinc finger domain-containing protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111452503 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.9e-104
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRS 60
           MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRS
Sbjct: 1   MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRS 60

Query: 61  SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCF 120
           SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCF
Sbjct: 61  SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCF 120

Query: 121 EDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAK 180
           EDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAK
Sbjct: 121 EDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAK 180

Query: 181 AEMFIAQFYEQMRRSNSDVRYLEMIKRSIR 211
           AEMFIAQFYEQMRRSNSDVRYLEMIKRSIR
Sbjct: 181 AEMFIAQFYEQMRRSNSDVRYLEMIKRSIR 210

[Close]

BLAST of CmoCh01G003070 vs. ExPASy TrEMBL
Match: A0A6J1KHA3 (uncharacterized protein LOC111493213 OS=Cucurbita maxima OX=3661 GN=LOC111493213 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91
Identity = 194/209 (92.82%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRS 60
           MADNL SL+SSITDDNNK NNNLVGNNGNNGVAPPKNTT KKNKSLNILRVALMLLRRRS
Sbjct: 1   MADNLISLESSITDDNNK-NNNLVGNNGNNGVAPPKNTTTKKNKSLNILRVALMLLRRRS 60

Query: 61  SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCF 120
           SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPS PDA TLR SPSIDCF
Sbjct: 61  SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSFPDA-TLRTSPSIDCF 120

Query: 121 EDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAK 180
           EDVKSSSASSVDGMSRYASAINLQELDQNN+DD   NDNDN+AEPK+DEDENADDMIDAK
Sbjct: 121 EDVKSSSASSVDGMSRYASAINLQELDQNNEDD---NDNDNEAEPKMDEDENADDMIDAK 180

Query: 181 AEMFIAQFYEQMRRSNSDVRYLEMIKRSI 210
           AEMFIAQFYEQ+RRSNSDVRY EMIKRSI
Sbjct: 181 AEMFIAQFYEQIRRSNSDVRYREMIKRSI 204

[Close]

BLAST of CmoCh01G003070 vs. ExPASy TrEMBL
Match: A0A5A7TSQ6 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001350 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35
Identity = 101/177 (57.06%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 40  KKKNKSLNILRVALMLLRRRSSKPNA----ASVEVASKGMWNRLVASIRPLHVQSNHSPQ 99
           KKK +S NIL+VAL LLR+RS KPN     A+++V SKGMWNRLV ++RPLH+QS+ S  
Sbjct: 48  KKKKRSTNILKVALKLLRQRSRKPNVTNVPAAIDVGSKGMWNRLVGAMRPLHLQSDESTT 107

Query: 100 HPQ-PIIVPSMPDATTLRASPSIDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDD 159
            P  P      P      +SPS+D FEDV SSS+SSVDGMSRYAS  NLQ LDQN+++++
Sbjct: 108 IPSLPTSTDPHPPPPLFPSSPSVDNFEDVNSSSSSSVDGMSRYASVDNLQALDQNDEEEE 167

Query: 160 DNNDNDNQAEPKIDEDENADDMIDAKAEMFIAQFYEQ--MRRSNSDVRYLEMIKRSI 210
           + N++   A       +  D+MIDAKAEMFIAQFYEQ  ++RS SDVRY EMIKRSI
Sbjct: 168 ERNNDKFYANM-----DGEDEMIDAKAEMFIAQFYEQIKLQRSESDVRYNEMIKRSI 219

[Close]

BLAST of CmoCh01G003070 vs. ExPASy TrEMBL
Match: A0A1S4DZU7 (uncharacterized protein LOC103494745 OS=Cucumis melo OX=3656 GN=LOC103494745 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35
Identity = 101/177 (57.06%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 40  KKKNKSLNILRVALMLLRRRSSKPNA----ASVEVASKGMWNRLVASIRPLHVQSNHSPQ 99
           KKK +S NIL+VAL LLR+RS KPN     A+++V SKGMWNRLV ++RPLH+QS+ S  
Sbjct: 48  KKKKRSTNILKVALKLLRQRSRKPNVTNVPAAIDVGSKGMWNRLVGAMRPLHLQSDESTT 107

Query: 100 HPQ-PIIVPSMPDATTLRASPSIDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDD 159
            P  P      P      +SPS+D FEDV SSS+SSVDGMSRYAS  NLQ LDQN+++++
Sbjct: 108 IPSLPTSTDPHPPPPLFPSSPSVDNFEDVNSSSSSSVDGMSRYASVDNLQALDQNDEEEE 167

Query: 160 DNNDNDNQAEPKIDEDENADDMIDAKAEMFIAQFYEQ--MRRSNSDVRYLEMIKRSI 210
           + N++   A       +  D+MIDAKAEMFIAQFYEQ  ++RS SDVRY EMIKRSI
Sbjct: 168 ERNNDKFYANM-----DGEDEMIDAKAEMFIAQFYEQIKLQRSESDVRYNEMIKRSI 219

[Close]

BLAST of CmoCh01G003070 vs. ExPASy TrEMBL
Match: A0A0A0KT88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002570 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34
Identity = 116/204 (56.86%), Postives = 137/204 (67.16%), Query Frame = 0


Query: 14  DDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRSSKPN------AAS 73
           DD N ++N  V +        PK   KKK KS NIL+VALMLLR+RS KPN      A  
Sbjct: 25  DDTNYDHNVKVEHE-----CEPK---KKKKKSTNILKVALMLLRQRSRKPNVVVNNSAIV 84

Query: 74  VEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCFEDVKSSS 133
             V SKGMWNRLV ++RPLH+QS+ S   P      + P    L +SPS+D FEDV SSS
Sbjct: 85  DHVGSKGMWNRLVGAMRPLHLQSDESTTVPSLPAASTEPPLPRLPSSPSLDNFEDVNSSS 144

Query: 134 ASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAKAEMFIAQ 193
            SSVDGMSRYASA NLQ+LDQN+ +D++ N ND  +     EDE  D+MIDAKAEMFIAQ
Sbjct: 145 -SSVDGMSRYASAANLQDLDQNDGEDEEIN-NDKVSSNVDGEDE--DEMIDAKAEMFIAQ 204

Query: 194 FYEQMR--RSNSDVRYLEMIKRSI 210
           FYEQM+  RS SD+RY EMIKRSI
Sbjct: 205 FYEQMKLQRSESDIRYNEMIKRSI 216

[Close]

BLAST of CmoCh01G003070 vs. NCBI nr
Match: XP_022949039.1 (GATA zinc finger domain-containing protein 8-like [Cucurbita moschata])

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-103
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRS 60
           MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRS
Sbjct: 1   MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRS 60

Query: 61  SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCF 120
           SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCF
Sbjct: 61  SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCF 120

Query: 121 EDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAK 180
           EDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAK
Sbjct: 121 EDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAK 180

Query: 181 AEMFIAQFYEQMRRSNSDVRYLEMIKRSIR 211
           AEMFIAQFYEQMRRSNSDVRYLEMIKRSIR
Sbjct: 181 AEMFIAQFYEQMRRSNSDVRYLEMIKRSIR 210

[Close]

BLAST of CmoCh01G003070 vs. NCBI nr
Match: KAG6606945.1 (hypothetical protein SDJN03_00287, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 371.3 bits (952), Expect = 5.4e-99
Identity = 207/217 (95.39%), Postives = 209/217 (96.31%), Query Frame = 0


Query: 1   MADNLKSLQSSIT-DDNNKNNNNLV------GNNGNNGVAPPKNTTKKKNKSLNILRVAL 60
           MADNL SL+SS+T DDNNKNNNNLV      GNNGNNGVAPPKNTTKKKNKSLNILRVAL
Sbjct: 1   MADNLNSLKSSVTDDDNNKNNNNLVGNNDNNGNNGNNGVAPPKNTTKKKNKSLNILRVAL 60

Query: 61  MLLRRRSSKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRA 120
           MLLRRRSSKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRA
Sbjct: 61  MLLRRRSSKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRA 120

Query: 121 SPSIDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENA 180
           SPSIDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENA
Sbjct: 121 SPSIDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENA 180

Query: 181 DDMIDAKAEMFIAQFYEQMRRSNSDVRYLEMIKRSIR 211
           DDMIDAKAEMFIAQFYEQMRRSNSDVRYLEMIKRSIR
Sbjct: 181 DDMIDAKAEMFIAQFYEQMRRSNSDVRYLEMIKRSIR 217

[Close]

BLAST of CmoCh01G003070 vs. NCBI nr
Match: XP_022998628.1 (uncharacterized protein LOC111493213 [Cucurbita maxima])

HSP 1 Score: 344.7 bits (883), Expect = 5.5e-91
Identity = 194/209 (92.82%), Postives = 199/209 (95.22%), Query Frame = 0


Query: 1   MADNLKSLQSSITDDNNKNNNNLVGNNGNNGVAPPKNTTKKKNKSLNILRVALMLLRRRS 60
           MADNL SL+SSITDDNNK NNNLVGNNGNNGVAPPKNTT KKNKSLNILRVALMLLRRRS
Sbjct: 1   MADNLISLESSITDDNNK-NNNLVGNNGNNGVAPPKNTTTKKNKSLNILRVALMLLRRRS 60

Query: 61  SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPSIDCF 120
           SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPS PDA TLR SPSIDCF
Sbjct: 61  SKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSFPDA-TLRTSPSIDCF 120

Query: 121 EDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAK 180
           EDVKSSSASSVDGMSRYASAINLQELDQNN+DD   NDNDN+AEPK+DEDENADDMIDAK
Sbjct: 121 EDVKSSSASSVDGMSRYASAINLQELDQNNEDD---NDNDNEAEPKMDEDENADDMIDAK 180

Query: 181 AEMFIAQFYEQMRRSNSDVRYLEMIKRSI 210
           AEMFIAQFYEQ+RRSNSDVRY EMIKRSI
Sbjct: 181 AEMFIAQFYEQIRRSNSDVRYREMIKRSI 204

[Close]

BLAST of CmoCh01G003070 vs. NCBI nr
Match: XP_023524600.1 (GATA zinc finger domain-containing protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.7 bits (857), Expect = 5.6e-88
Identity = 192/213 (90.14%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 1   MADNLKSLQSSITDDNNKNNNNLVG---NNGNNGVAPPKN-TTKKKNKSLNILRVALMLL 60
           MADNL SL+SSITDDN  NNNNLVG   NNGNNGVA PKN TTKKKNKSLNILRVALMLL
Sbjct: 1   MADNLISLESSITDDNKNNNNNLVGNNDNNGNNGVAAPKNTTTKKKNKSLNILRVALMLL 60

Query: 61  RRRSSKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDATTLRASPS 120
           RRRSSKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDA TLRASPS
Sbjct: 61  RRRSSKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQPIIVPSMPDA-TLRASPS 120

Query: 121 IDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDM 180
           IDCFEDVKSSSASSVDGMSRYASAINLQE DQNN   DDNN+NDNQ EPK+DED+N DDM
Sbjct: 121 IDCFEDVKSSSASSVDGMSRYASAINLQEFDQNN---DDNNENDNQVEPKMDEDDNVDDM 180

Query: 181 IDAKAEMFIAQFYEQMRRSNSDVRYLEMIKRSI 210
           IDAKAEMFIA+FYEQMRRSNSDVRY EMIKRSI
Sbjct: 181 IDAKAEMFIARFYEQMRRSNSDVRYREMIKRSI 209

[Close]

BLAST of CmoCh01G003070 vs. NCBI nr
Match: XP_016901496.1 (PREDICTED: uncharacterized protein LOC103494745 [Cucumis melo] >KAA0044405.1 DUF761 domain-containing protein [Cucumis melo var. makuwa] >TYK29532.1 DUF761 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-35
Identity = 101/177 (57.06%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 40  KKKNKSLNILRVALMLLRRRSSKPNA----ASVEVASKGMWNRLVASIRPLHVQSNHSPQ 99
           KKK +S NIL+VAL LLR+RS KPN     A+++V SKGMWNRLV ++RPLH+QS+ S  
Sbjct: 48  KKKKRSTNILKVALKLLRQRSRKPNVTNVPAAIDVGSKGMWNRLVGAMRPLHLQSDESTT 107

Query: 100 HPQ-PIIVPSMPDATTLRASPSIDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDD 159
            P  P      P      +SPS+D FEDV SSS+SSVDGMSRYAS  NLQ LDQN+++++
Sbjct: 108 IPSLPTSTDPHPPPPLFPSSPSVDNFEDVNSSSSSSVDGMSRYASVDNLQALDQNDEEEE 167

Query: 160 DNNDNDNQAEPKIDEDENADDMIDAKAEMFIAQFYEQ--MRRSNSDVRYLEMIKRSI 210
           + N++   A       +  D+MIDAKAEMFIAQFYEQ  ++RS SDVRY EMIKRSI
Sbjct: 168 ERNNDKFYANM-----DGEDEMIDAKAEMFIAQFYEQIKLQRSESDVRYNEMIKRSI 219

[Close]

BLAST of CmoCh01G003070 vs. TAIR 10
Match: AT4G02160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61710.1); Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-09
Identity = 63/181 (34.81%), Postives = 89/181 (49.17%), Query Frame = 0


Query: 24  VGNNGNNGVAPPKNTTKKK-NKSLNILRVAL-MLLRRRSSKPNAASVEVASKGMWNRLVA 83
           + N  N G    KN  KKK ++  +++ V L ML RRR SKP        + G W R+V 
Sbjct: 3   IQNQINGGQEEIKNMKKKKRSRGFHVIGVVLYMLRRRRRSKP-------LNNGFWRRVVE 62

Query: 84  SIRPLHVQS-NHSPQHPQPIIVPSMPDATTLRASPSID-----CFEDVKSSSASSVDGMS 143
           S   L   +    P      I+P      T     S D       E + ++S+S   G+S
Sbjct: 63  SFGQLKNDNVTVLPSSSNITILPPSSSPVTDEVPASSDDQVSEMVEVLTATSSSCSSGIS 122

Query: 144 RYASAINLQELDQNNDDDDDNNDNDNQAEPKIDEDENADDMIDAKAEMFIAQFYEQMRRS 197
            Y SA +L+++D  ++DDDD+ +  N        D+  D+MIDAKAE FI +FYEQMR  
Sbjct: 123 GYGSAKSLRDMDCLDEDDDDDENYGN--------DDGGDEMIDAKAEEFIVRFYEQMRMQ 168

[Close]

BLAST of CmoCh01G003070 vs. TAIR 10
Match: AT5G61710.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-05
Identity = 48/157 (30.57%), Postives = 72/157 (45.86%), Query Frame = 0


Query: 40  KKKNKSLNILRVALMLLRRRSSKPNAASVEVASKGMWNRLVASIRPLHVQSNHSPQHPQP 99
           KK ++ +++  V + +LRRR           ++   W R+V S+R +      S     P
Sbjct: 6   KKSSRGMHMFSVVMFMLRRR---------RTSNTRFWRRVVESVRKV-----RSEITIMP 65

Query: 100 IIVPSMPDATTLRASPSIDCFEDVKSSSASSVDGMSRYASAINLQELDQNNDDDDDNNDN 159
           +      D          +  E   + S+SS  G+S Y SA++L++LD   DDD D   +
Sbjct: 66  VTEMGGDDGDNEVDDRLSETMEVFTAPSSSSSSGISGYGSAMSLRDLDYPYDDDIDECYS 125

Query: 160 DNQAEPKIDEDENADDMIDAKAEMFIAQFYEQMRRSN 197
           D Q           DDMID KAE FI +FY QM+  N
Sbjct: 126 DVQ---------GGDDMIDEKAEEFIVRFYAQMKMQN 139

The following BLAST results are available for this feature:

BLAST of CmoCh01G003070 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBN8	7.9e-104	100.00	GATA zinc finger domain-containing protein 8-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KHA3	2.6e-91	92.82	uncharacterized protein LOC111493213 OS=Cucurbita maxima OX=3661 GN=LOC111493213...	[more]
A0A5A7TSQ6	3.5e-35	57.06	DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4DZU7	3.5e-35	57.06	uncharacterized protein LOC103494745 OS=Cucumis melo OX=3656 GN=LOC103494745 PE=...	[more]
A0A0A0KT88	1.7e-34	56.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002570 PE=4 SV=1	[more]

BLAST of CmoCh01G003070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949039.1	1.6e-103	100.00	GATA zinc finger domain-containing protein 8-like [Cucurbita moschata]	[more]
KAG6606945.1	5.4e-99	95.39	hypothetical protein SDJN03_00287, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998628.1	5.5e-91	92.82	uncharacterized protein LOC111493213 [Cucurbita maxima]	[more]
XP_023524600.1	5.6e-88	90.14	GATA zinc finger domain-containing protein 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_016901496.1	7.2e-35	57.06	PREDICTED: uncharacterized protein LOC103494745 [Cucumis melo] >KAA0044405.1 DUF...	[more]

BLAST of CmoCh01G003070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02160.1	7.3e-09	34.81	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G61710.1	2.9e-05	30.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 174..207 e-value: 2.2E-8 score: 33.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..173
None	No IPR available	PANTHER	PTHR36378	COTTON FIBER PROTEIN	coord: 13..199
None	No IPR available	PANTHER	PTHR36378:SF1	COTTON FIBER PROTEIN	coord: 13..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003070.1	CmoCh01G003070.1	mRNA