CmoCh01G002370 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 1069828 .. 1073459 (-)
RNA-Seq Expression	CmoCh01G002370
Synteny	CmoCh01G002370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTAAAAGGTTATTACCGGCACTCCGACGTGGATGAGGGCTTGCACAGTTACATCTCCGGAGAAGATTCCAGCTCCGAAGTACATGATCACTGCAACAATCACAGCAAGTCCAACGCCGAGAACGAAGCTCATCTGCATTTTCGCCCCAAGTAAATTCATGCTTACTTACGATTCATGTATTATTTTCTATGTTTCTTTCATTTTGGACTGTATTTTCGTTGGGGAATTTTGTCGAGCATGTTATGTGCAATGCATTAGACTGGGAATTTGGTTACCTGTAGCACTCTTGTGGCTGTAGCCGTTGTCTTGTCGTAGTCTTTCTCTGCAAATGCACAGGCTAGGATCGCCTGAAGGAAGAATTTAACGCCCACAATAAGTGATTACTAGTATTTCTGTTTTGGAGTTCATCAACAAATGGAATGAAACGATTCAAATTTTTGATCTCTTGATCGATTGGAAATGACAGAAGTTCGTAAGTTATGGTTGATAACATGAGGTTTTGATTTTAGTACCTGTCCGGCAACAGCAAGCCCATCAGCGAGGAGGGAGGACGTCATCCAGACTTGTAAGCAAGTCTGGAAGGCAGCCATCGGCGTTGGACCTAGCCGAGCAGCCATGGATGCAGCAAGTGTCACGCAGAAGGTCACAGCTATAACTCTTGCCAACAGCAGACTACCTGCATTCAGAAAAGCTCTACCATGTTGGAACCAATATTGATTTGAATTTGTAAACTTCTAATGGAAATCTTCAAACAACTTTTGATTTCTATGTTGTTGTTTTCAGGTACAAATCTCATTAGTAGAAGAAAAGGAAGGTATGAAGAATGGTTATTACCATTTTTGAGAAATCGACCGAGCTGCAATTCTCTAAGGCTAGGAGGTAAGAGATCCACTTTTTGCATTAATCTCCAAGCTAGAACCAACACAATTAAGTACCTGAGGTAATAATAATATCAAGTTATGATTGAAATGAATGTATTGGAATAACACAAATATGTGAGTGATGATATTACTTACTGAGAAAGAACATGTGCTATGGCTGCACCCTTCACTCCCAAATGGCACACAAATATCAATATTGGATCCAAAATGATATTTGTTGTGTACCCCAAAACTGTTCCAAAAGTTCAAAGAAGAGAATGAAGAAAAGTTAGAGAAAGATGGAAATTCCTAACAGTTTTAAAGAAGTCTGATAAAAATTTTGAGCTACCAATAACATAGAGAGGAGTTCTTGTGTCCTTAAATCCTCTGAAGATTCCCTGCATGGCCAGAGAGAGAAGAACAGCGGGAGCACCAAGTGACCTTAACACCAAGTATTTCATTGCAGGAGCTAGCATTGGAGAGCCCTGTTGATTCAATGTATCAATACTAGAAAAAATGAGTACAATATGGAAGAAGTTGCATTAGAAACCGTAAGCGTCAGGGTTTATTGTTGTTTTCAAGTAAGTTTTTGAAGATGAGGAAACTTACTTGCTTCACTCCCATTACATTTAATAGGAATTTAGCCCCAAATGCAAGGAAAACTGCTTGCAGGAGGCCCAAAACTGTCCCAAAGATCAGTGCTGTGGATGCTGAAGCAATGTGCTTCTTCTCTCTATTCTTGGGCTTGACAGTAGGAGGTTGACTCTTCTTTGTGCTCAAATCTGCGATTGAAAATCCCAAGCTACTCAGTTTGAATATAGAAATTAGATTAATCCCTTCGTTTACTTAGTTATGGTATTAGCAATCTCGTTTTAAGGTTAGAGGTTCAATTCATGATCCTCATCGTTGTTTAAACAATAAAAAGATTTTACCTTTTTCAGAGTTCTCAAGTGTGGCATTTTCTTGTACAGATTCTCTTTTTCCATCATGTTCTTCTGAGGACTTCTTTTCCAACATGTTTGGATTCTTTTCCAAATCATGAATGGTGCCATTTCCGGGTGTCGAATTTCTCGTTTCTTTAGTTATAAGTGAAGCAGAACTACTCTTTTCCAACATGTTTTCCTTCTTGGTTTCATCCTGTAATGTAAGTTCTCTCTTTCGGCCATTCTCTGTCAAATGCTTCTCTGTCTCACCTTTCACTGGTTTTATGGCTGTTTTTCCAATAGTGTCTTCCTCAGCAACAAATGATGTTGTTATGCTCACCAATGGGAATATGGTGATCCTTGAAGCTTGATTGAATATCGCAACAGACACTCCAACGGCTGCAAGTTCAACAGCTCCTGCAGAAGCCAAGTTGAACATTATCTTCATCAATACAAATGATTAAATTGGTTGCAATGAAAAGATAGCAGCAAATGCAAGGTATATACCAATATGGCCGACGAAAATGGTGTCGATAAGAGAAGCAATGGGATCAGCAGCAACAGCTAGAGCAGCTGGAAATGCAATTCCTAGGATCTCTTTTCCAAGATCATCCCACTTGAAAACAAGTCTAGAAGGACATTTCTTTGCATCAGTAACAAATTAAAGAGACTACAAAGAGAATTCAAGAAGCAAAAGATCATGGCGGGTTTCGCCCTATTGACTTTAAAGTGAAAATTGGAGCGGAAAGTTCTATCTATACCTTGCATCCTTGAAGAAAACACTCATTGGCATCTTCCACTGGTTCTTTTTTATCACCAAACCAAGCTCATTAGCCATAATTTAGTTTTTTTTTTTCTTATCTGATCAAGTTCTTAGTCTTTTTATATAGCAATCAGCCACTTGTCTCTCTCTTTCTCCAAATGTCGCAGAGAAGCAAGATATGAAATCTTCAGGCTGAGTGATTATGAGGCAAAACATCAGTTACAATCACAGAAAAACATGGAATGTATGCAAAAGAAATGATGCCTTCTTCACCAAAAACATGGAAAGCAATTGAAACGCATGGAAGCTCTCTTCTGCTCACATGGTGAAGCAGCATGCTGATGAAAAGGTATGCAAATGAATGCAGATATTGAGATGAAAAGACAACCAGTGCTGTGCTCATGACAAGGTATGTGCTTTTTTATACTGATTTTCCAACACTAGCTTTGGAAAGATATGGTTGTCTTAATATTACGCTCAGCATTGGAATCTTGGGATAAAATCTGACCTCCCTTAGTTCTCTCGGTCTGTGAAACAACCTAAAAATGTTCTAACCAAGAGAATATATGTACTTTTTTTAGGACAACTTGGTTGAACAATGAGAAAATTCCTTTGTTGTCTCACTCATGTTGGGACTTCTGACATGTTGGGAAGATTGTTTTCATCTTCACCACCCCAGATTTGCTTCTTTGGAATGATTCCAAATGGCCAATCTAGGATATGTGACATCCCACGTCAGTTAGAGAGAGAAACAAAACATTCCTTATAAGGGTGTGGAAATCTCTCCTTAACAGGTACGTTTTAAAACCGTGAAGCTGACGATGATACGTAATAGGCTAAATTGTACAATATCGGCTAGTGATGTGCTTGGATTGTTGCAGGTTCACGGTTTTTGATGCAAAGAAAGAGAGTGAAATGTTGTTTGCAGAGATTTGATTAAAGATGTAAGTGGTTCAAAATTTGATATACCTCAGAAAGAACCAATTCTTTCCTTTTTGATGTTCATGTGCATGTTCATGTTGAATTTGACATGTCGTGAAAATGGATAGTTAAGTTGCTGAATTATTTAAAGAATATTAG

mRNA sequence

ATGTATTTAAAAGGTTATTACCGGCACTCCGACGTGGATGAGGGCTTGCACAGTTACATCTCCGGAGAAGATTCCAGCTCCGAAGTACATGATCACTGCAACAATCACAGCAAGTCCAACGCCGAGAACGAAGCTCATCTGCATTTTCGCCCCAATACCTGTCCGGCAACAGCAAGCCCATCAGCGAGGAGGGAGGACGTCATCCAGACTTGTAAGCAAGTCTGGAAGGCAGCCATCGGCGTTGGACCTAGCCGAGCAGCCATGGATGCAGCAAGTGTCACGCAGAAGGTACAAATCTCATTAGTAGAAGAAAAGGAAGAATATTAG

Coding sequence (CDS)

ATGTATTTAAAAGGTTATTACCGGCACTCCGACGTGGATGAGGGCTTGCACAGTTACATCTCCGGAGAAGATTCCAGCTCCGAAGTACATGATCACTGCAACAATCACAGCAAGTCCAACGCCGAGAACGAAGCTCATCTGCATTTTCGCCCCAATACCTGTCCGGCAACAGCAAGCCCATCAGCGAGGAGGGAGGACGTCATCCAGACTTGTAAGCAAGTCTGGAAGGCAGCCATCGGCGTTGGACCTAGCCGAGCAGCCATGGATGCAGCAAGTGTCACGCAGAAGGTACAAATCTCATTAGTAGAAGAAAAGGAAGAATATTAG

Protein sequence

MYLKGYYRHSDVDEGLHSYISGEDSSSEVHDHCNNHSKSNAENEAHLHFRPNTCPATASPSARREDVIQTCKQVWKAAIGVGPSRAAMDAASVTQKVQISLVEEKEEY

Homology

[Close]

BLAST of CmoCh01G002370 vs. ExPASy TrEMBL
Match: J3LLF7 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.9e-07
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 53 TCPATASPSARREDVIQTCKQVWKAAIGVGPSRAAMDAASVTQKV 98
          TCPATASPSARR+   Q+ +Q+WKAA+ VGP RAA D ASVTQKV
Sbjct: 5  TCPATASPSARRDVASQSWQQIWKAAMMVGPWRAANDDASVTQKV 49

The following BLAST results are available for this feature:

BLAST of CmoCh01G002370 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
J3LLF7	7.9e-07	71.11	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]

BLAST of CmoCh01G002370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G002370.1	CmoCh01G002370.1	mRNA