CmoCh01G002230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L6
Location	Cmo_Chr01: 985729 .. 987574 (+)
RNA-Seq Expression	CmoCh01G002230
Synteny	CmoCh01G002230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTAAGGCAGCGAGAGCTAGCAGGAACCCTGATCTCATTCGTGGGGTTGGGAAATATTCGAGGTCGAAGATGTACCACAAGCGTGGTCTTTGGGCAATCAAGGCAAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCAAGCCTCAGGCCGACGCTCCGGCAGAGAAGGCGCCGAAGTTTTACCCTGCTGACGATGTCAAGAAGCCACTTGTCAACAAGCGCAAGGCTAAGCCCACCAAACTTAGGTTTATCTCTCTCAATGTCTTTCTTTTGATGTTTATTGCAGTGCCTTGGAACGTATATTGTTTGGTGTATTTTGAGTTTGTTATGGTTCGGAAACTGAGGAATTTGGAATCAACTAAGAAACAATTGCTTTAATTACATGAAATTACAAAATGAATGGGGCAGTGTCACTCTCTATTAGACTGAATAGAGTTCATGCTGTAGCTATGAAAAAAGGGGGATTTTACATTTTTAGGTTTCCAGATTTGAAATTTGTTGAAGTCTGAACTGCGTGTAGTGAAGTAATGTTGCTCATTTTCCAAATAATAAACATTTGGGTCAGTTCAAAGAAATGTGCGTCGGGTGTTTTCATATAACATAGTTTGTCAATTTCATATCATTTGCAGGTCTAGCATTACTCCTGGAACCGTGCTTATCATTCTCGCTGGAAGGTTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTTTTAGTCACTGGTGAGTATTGGCAATTTTCTCTAATCGCCTTCCTTTGTAATTTTGCTGTAATATCGCTATCTGTTCATGTGGTCGTTGTGCTGTAATGTCGCTATCTTAAATGTGTTGTGTGCATTACTTTTCCTATTGACAAGTAAGAAGTATTGGGACGTTGTATGCCTCCATTTCTGTCTAATATACCCTGCAATTACATGCCACTTTAATGTCTCATGCCTCCTATTCTGACTGTATGTTGTGCAAATTTTCTTTACATACCTTAGACCTTTAAGCTTCATTTGGTGTTGAAACAAAGAGAGTTTCTAAGCTTCATTTGGCGGTTGTGGGTTGGGGAGGGGTTGGTCTAGATGATGCAGACTGTAGTGATAGTGATAGATGTTTGGGAGAAAGGGTGCACATAAAGTAGCGATTGGCCAAGTCTTTGATTTTTGAATTTGCAATTTTCGAACCTACAAGGGATTTTCTTAATGTAAAGTTTGCTTTTTTAGGACCATTCAAGGTCAATGGTGTTCCGTTGAGGCGTGTGAATCAGTCGTATGTGATTGCAACCTCCACCAAGGTAGACATTGCAGGAGTCAACGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTAAGATGAAGAAAAAGAAGGGAGAAGGAGAGTTCTTTGAGGCAGAGAAGGAGGTTCGTAATTGTTTTTATGATGATTGTTTTTTCAAATACTTCAATTTTTGTCACTTTCTTGTCTTAATTTCTGGTCACCATTGTTTTACATGTAGGAAAAAAGCTCGCTCCCACAGGACAAAAAGGATGATCAGAAGGCCGTGGACTCAGCTTTGCTCAAGTCGATCGAGGCTGTTTCAGATTTAAAGACATACTTAGCTGCGAGGTTTTCTCTAAAGGCAGGCATGAAACCTCATGAGCTTGTTTTCTAGATATTTGCTGTTTTCTTGTGGAATTGGTCACTACAATTTTCTTGTTATGTGTTTTGTTATGAGGATCCTAGATTTGAAATTATATCCCGTAATGAATTTTGACTGATAGTGATAAGATATGTAATATTTCTTTTATTCCCATCACTTTACTTACGCTTACTTACAAAGTAATCTACAAAGTAATCG

mRNA sequence

ATGGCTCCTAAGGCAGCGAGAGCTAGCAGGAACCCTGATCTCATTCGTGGGGTTGGGAAATATTCGAGGTCGAAGATGTACCACAAGCGTGGTCTTTGGGCAATCAAGGCAAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCAAGCCTCAGGCCGACGCTCCGGCAGAGAAGGCGCCGAAGTTTTACCCTGCTGACGATGTCAAGAAGCCACTTGTCAACAAGCGCAAGGCTAAGCCCACCAAACTTAGGTTTATCTCTCTCAATGTCTTTCTTTTGATGTCTAGCATTACTCCTGGAACCGTGCTTATCATTCTCGCTGGAAGGTTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTTTTAGTCACTGGACCATTCAAGGTCAATGGTGTTCCGTTGAGGCGTGTGAATCAGTCGTATGTGATTGCAACCTCCACCAAGGTAGACATTGCAGGAGTCAACGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTAAGATGAAGAAAAAGAAGGGAGAAGGAGAGTTCTTTGAGGCAGAGAAGGAGGAAAAAAGCTCGCTCCCACAGGACAAAAAGGATGATCAGAAGGCCGTGGACTCAGCTTTGCTCAAGTCGATCGAGGCTGTTTCAGATTTAAAGACATACTTAGCTGCGAGGTTTTCTCTAAAGGCAGGCATGAAACCTCATGAGCTTGTTTTCTAGATATTTGCTGTTTTCTTGTGGAATTGGTCACTACAATTTTCTTGTTATGTGTTTTGTTATGAGGATCCTAGATTTGAAATTATATCCCGTAATGAATTTTGACTGATAGTGATAAGATATGTAATATTTCTTTTATTCCCATCACTTTACTTACGCTTACTTACAAAGTAATCTACAAAGTAATCG

Coding sequence (CDS)

ATGGCTCCTAAGGCAGCGAGAGCTAGCAGGAACCCTGATCTCATTCGTGGGGTTGGGAAATATTCGAGGTCGAAGATGTACCACAAGCGTGGTCTTTGGGCAATCAAGGCAAAAAATGGAGGTGTCTTCCCTCGCCACGATGCCAAGCCTCAGGCCGACGCTCCGGCAGAGAAGGCGCCGAAGTTTTACCCTGCTGACGATGTCAAGAAGCCACTTGTCAACAAGCGCAAGGCTAAGCCCACCAAACTTAGGTTTATCTCTCTCAATGTCTTTCTTTTGATGTCTAGCATTACTCCTGGAACCGTGCTTATCATTCTCGCTGGAAGGTTCAAGGGAAAGAGAGTTGTGTTCTTGAAGCAACTTCCATCTGGGTTGCTTTTAGTCACTGGACCATTCAAGGTCAATGGTGTTCCGTTGAGGCGTGTGAATCAGTCGTATGTGATTGCAACCTCCACCAAGGTAGACATTGCAGGAGTCAACGTGGAGAAGTTTGATGACAAATATTTCTCCAAGGAAGTTAAGATGAAGAAAAAGAAGGGAGAAGGAGAGTTCTTTGAGGCAGAGAAGGAGGAAAAAAGCTCGCTCCCACAGGACAAAAAGGATGATCAGAAGGCCGTGGACTCAGCTTTGCTCAAGTCGATCGAGGCTGTTTCAGATTTAAAGACATACTTAGCTGCGAGGTTTTCTCTAAAGGCAGGCATGAAACCTCATGAGCTTGTTTTCTAG

Protein sequence

MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAPKFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKGEGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF

Homology

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BLAST of CmoCh01G002230 vs. ExPASy Swiss-Prot
Match: Q9C9C6 (60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 5.5e-98
Identity = 186/238 (78.15%), Postives = 205/238 (86.13%), Query Frame = 0


Query: 4   KAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAPKFY 63
           + A+ +RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK + DAP EK PKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQLPS 123
           PA+DVKKPL N+R AKP KLR          +SITPGTVLIILAGRFKGKRVVFLKQL S
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLR----------ASITPGTVLIILAGRFKGKRVVFLKQLAS 125

Query: 124 GLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKGEGE 183
           GLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDI+GV ++KFDDKYF K  + KKKK EGE
Sbjct: 126 GLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGE 185

Query: 184 FFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 242
           FFEAEKEEK  +PQ KKDDQKAVD+AL+K+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 186 FFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of CmoCh01G002230 vs. ExPASy Swiss-Prot
Match: Q9FZ76 (60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 9.4e-98
Identity = 184/240 (76.67%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 2   APKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAPK 61
           A +  + +RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+P+ DAP EK  K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQL 121
           FYPA+DVKKPLVN+RK KPTKL+          +SITPGTVLIILAGRFKGKRVVFLKQL
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLK----------ASITPGTVLIILAGRFKGKRVVFLKQL 123

Query: 122 PSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKGE 181
            SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTK+DI+GVN EKFDDKYF K  + KKKK E
Sbjct: 124 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTE 183

Query: 182 GEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 241
           GEFFEAEKEEK  +PQ+KK+DQK VD+AL+KSIEAV +LK YL ARFSL  GMKPHELVF
Sbjct: 184 GEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of CmoCh01G002230 vs. ExPASy Swiss-Prot
Match: Q9C9C5 (60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 9.4e-98
Identity = 186/238 (78.15%), Postives = 205/238 (86.13%), Query Frame = 0


Query: 4   KAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAPKFY 63
           +  + +RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK + DAP EK PKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQLPS 123
           PA+DVKKPL N+R AKPTKLR          +SITPGTVLIILAGRFKGKRVVFLKQL S
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLR----------ASITPGTVLIILAGRFKGKRVVFLKQLAS 125

Query: 124 GLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKGEGE 183
           GLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDI+GV ++KFDDKYF K  + KKKK EGE
Sbjct: 126 GLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGE 185

Query: 184 FFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 242
           FFEAEKEEK  +PQ KKDDQKAVD+AL+K+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 186 FFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of CmoCh01G002230 vs. ExPASy Swiss-Prot
Match: P34091 (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.0e-96
Identity = 185/233 (79.40%), Postives = 200/233 (85.84%), Query Frame = 0


Query: 9   SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAPKFYPADDV 68
           SRNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  K       EK PKFYPADDV
Sbjct: 12  SRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDV 71

Query: 69  KKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 128
           KKPL+NKRK KPTKLR          +SITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 72  KKPLINKRKPKPTKLR----------ASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLV 131

Query: 129 TGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKGEGEFFEAE 188
           TGPFKVNGVPLRRVNQ+YVIATSTKVDI+GVNVEKFDDKYF K+ + K KKGEGEFFEAE
Sbjct: 132 TGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAE 191

Query: 189 KEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 242
           K+E + LPQ+KKDDQKAVD ALLK+IE V +LK YL ARFSLKAGMKPHELVF
Sbjct: 192 KKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

[Close]

BLAST of CmoCh01G002230 vs. ExPASy Swiss-Prot
Match: P21533 (60S ribosomal protein L6 OS=Rattus norvegicus OX=10116 GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 183.7 bits (465), Expect = 2.4e-45
Identity = 121/254 (47.64%), Postives = 156/254 (61.42%), Query Frame = 0


Query: 9   SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQAD--------------- 68
           SRNP L+RG+G+YSRS MY ++ L+  K K      + + K + +               
Sbjct: 54  SRNPVLVRGIGRYSRSAMYSRKALY--KRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKN 113

Query: 69  -----APAEKAPKFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAG 128
                    K P++YP +DV + L++  K KP      S +V  L SSITPGTVLIIL G
Sbjct: 114 GGTRVVKLRKMPRYYPTEDVPRKLLSHGK-KP-----FSQHVRRLRSSITPGTVLIILTG 173

Query: 129 RFKGKRVVFLKQLPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEK-FDDK 188
           R +GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTKVDI+ V + K   D 
Sbjct: 174 RHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDA 233

Query: 189 YFSKEVKMKKKKGEGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAAR 242
           YF K+   K +  EGE F+ EK EK  + + +K DQKAVDS +L  I+AV  L+ YL ++
Sbjct: 234 YFKKKPLRKPRHQEGEIFDTEK-EKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQ 293

[Close]

BLAST of CmoCh01G002230 vs. ExPASy TrEMBL
Match: A0A6J1GC93 (60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111452826 PE=3 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.8e-118
Identity = 231/241 (95.85%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP
Sbjct: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          SSITPGTVLIILAGRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------SSITPGTVLIILAGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV
Sbjct: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. ExPASy TrEMBL
Match: A0A6J1KGX0 (60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111493107 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.4e-117
Identity = 228/241 (94.61%), Postives = 229/241 (95.02%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPKAAR SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEK P
Sbjct: 1   MAPKAARTSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          SSITPGTVLIILAGRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------SSITPGTVLIILAGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKS+LPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV
Sbjct: 181 EGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. ExPASy TrEMBL
Match: A0A6J1F5G0 (60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111442321 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.1e-112
Identity = 219/241 (90.87%), Postives = 225/241 (93.36%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPK AR SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+P+ DAPAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          SSITPGTVLIIL GRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------SSITPGTVLIILTGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD+AGVNVEKFDDKYFSKEV+ KKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKS+LPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLK+GMKPHELV
Sbjct: 181 EGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKSGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. ExPASy TrEMBL
Match: A0A0A0L9J7 (60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_3G698560 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.8e-112
Identity = 219/241 (90.87%), Postives = 225/241 (93.36%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPK AR SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKP+A+APAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAEAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKP+VNKRKAKPTKLR          SSITPGTVLIIL GRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPIVNKRKAKPTKLR----------SSITPGTVLIILTGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI GV+VEKFDDKYFSKEV+ KKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDITGVSVEKFDDKYFSKEVQKKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKS+LPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV
Sbjct: 181 EGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. ExPASy TrEMBL
Match: A0A5D3CKB9 (60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00210 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.9e-112
Identity = 218/241 (90.46%), Postives = 223/241 (92.53%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPK AR SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKP+ +APAEK P
Sbjct: 1   MAPKTARVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKPEAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          +SITPGTVLIIL GRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------ASITPGTVLIILTGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI GVNVEKFDDKYFSKEV+ KKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDITGVNVEKFDDKYFSKEVQKKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKS+LPQDKKDDQK VDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV
Sbjct: 181 EGEFFEAEKEEKSALPQDKKDDQKTVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. NCBI nr
Match: XP_022949498.1 (60S ribosomal protein L6-2-like [Cucurbita moschata] >KAG7036570.1 60S ribosomal protein L6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434.1 bits (1115), Expect = 7.8e-118
Identity = 231/241 (95.85%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP
Sbjct: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          SSITPGTVLIILAGRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------SSITPGTVLIILAGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV
Sbjct: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. NCBI nr
Match: XP_023525962.1 (60S ribosomal protein L6-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 230/241 (95.44%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAK QADAPAEKAP
Sbjct: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLQADAPAEKAP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          SSITPGTVLIILAGRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------SSITPGTVLIILAGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV
Sbjct: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. NCBI nr
Match: XP_022998493.1 (60S ribosomal protein L6-2-like [Cucurbita maxima])

HSP 1 Score: 429.5 bits (1103), Expect = 1.9e-116
Identity = 228/241 (94.61%), Postives = 229/241 (95.02%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPKAAR SRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEK P
Sbjct: 1   MAPKAARTSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          SSITPGTVLIILAGRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------SSITPGTVLIILAGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKS+LPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV
Sbjct: 181 EGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. NCBI nr
Match: KAG6606864.1 (60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 429.1 bits (1102), Expect = 2.5e-116
Identity = 229/241 (95.02%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQAD+ AEKAP
Sbjct: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADSLAEKAP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          SSITPGTVLIILAGRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------SSITPGTVLIILAGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV
Sbjct: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. NCBI nr
Match: XP_023528566.1 (60S ribosomal protein L6-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.1 bits (1076), Expect = 2.6e-113
Identity = 221/241 (91.70%), Postives = 227/241 (94.19%), Query Frame = 0


Query: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAP 60
           MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDA+P+ DAPAEK P
Sbjct: 1   MAPKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKTDAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQ 120
           KFYPADDVKKPLVNKRKAKPTKLR          SSITPGTVLIIL GRFKGKRVVFLKQ
Sbjct: 61  KFYPADDVKKPLVNKRKAKPTKLR----------SSITPGTVLIILTGRFKGKRVVFLKQ 120

Query: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKG 180
           LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD+AGVNVEKFDDKYFSKEV+ KKKKG
Sbjct: 121 LPSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDLAGVNVEKFDDKYFSKEVQKKKKKG 180

Query: 181 EGEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELV 240
           EGEFFEAEKEEKS+LPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLK+GMKPHELV
Sbjct: 181 EGEFFEAEKEEKSALPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKSGMKPHELV 231

Query: 241 F 242
           F
Sbjct: 241 F 231

[Close]

BLAST of CmoCh01G002230 vs. TAIR 10
Match: AT1G74060.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 358.6 bits (919), Expect = 3.9e-99
Identity = 186/238 (78.15%), Postives = 205/238 (86.13%), Query Frame = 0


Query: 4   KAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAPKFY 63
           + A+ +RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK + DAP EK PKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQLPS 123
           PA+DVKKPL N+R AKP KLR          +SITPGTVLIILAGRFKGKRVVFLKQL S
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLR----------ASITPGTVLIILAGRFKGKRVVFLKQLAS 125

Query: 124 GLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKGEGE 183
           GLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDI+GV ++KFDDKYF K  + KKKK EGE
Sbjct: 126 GLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGE 185

Query: 184 FFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 242
           FFEAEKEEK  +PQ KKDDQKAVD+AL+K+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 186 FFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of CmoCh01G002230 vs. TAIR 10
Match: AT1G18540.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 357.8 bits (917), Expect = 6.7e-99
Identity = 184/240 (76.67%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 2   APKAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAPK 61
           A +  + +RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+P+ DAP EK  K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQL 121
           FYPA+DVKKPLVN+RK KPTKL+          +SITPGTVLIILAGRFKGKRVVFLKQL
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLK----------ASITPGTVLIILAGRFKGKRVVFLKQL 123

Query: 122 PSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKGE 181
            SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTK+DI+GVN EKFDDKYF K  + KKKK E
Sbjct: 124 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTE 183

Query: 182 GEFFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 241
           GEFFEAEKEEK  +PQ+KK+DQK VD+AL+KSIEAV +LK YL ARFSL  GMKPHELVF
Sbjct: 184 GEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of CmoCh01G002230 vs. TAIR 10
Match: AT1G74050.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 357.8 bits (917), Expect = 6.7e-99
Identity = 186/238 (78.15%), Postives = 205/238 (86.13%), Query Frame = 0


Query: 4   KAARASRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPQADAPAEKAPKFY 63
           +  + +RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAK + DAP EK PKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKAKPTKLRFISLNVFLLMSSITPGTVLIILAGRFKGKRVVFLKQLPS 123
           PA+DVKKPL N+R AKPTKLR          +SITPGTVLIILAGRFKGKRVVFLKQL S
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLR----------ASITPGTVLIILAGRFKGKRVVFLKQLAS 125

Query: 124 GLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIAGVNVEKFDDKYFSKEVKMKKKKGEGE 183
           GLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDI+GV ++KFDDKYF K  + KKKK EGE
Sbjct: 126 GLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGE 185

Query: 184 FFEAEKEEKSSLPQDKKDDQKAVDSALLKSIEAVSDLKTYLAARFSLKAGMKPHELVF 242
           FFEAEKEEK  +PQ KKDDQKAVD+AL+K+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 186 FFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

The following BLAST results are available for this feature:

BLAST of CmoCh01G002230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9C6	5.5e-98	78.15	60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1	[more]
Q9FZ76	9.4e-98	76.67	60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1	[more]
Q9C9C5	9.4e-98	78.15	60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1	[more]
P34091	3.0e-96	79.40	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 S...	[more]
P21533	2.4e-45	47.64	60S ribosomal protein L6 OS=Rattus norvegicus OX=10116 GN=Rpl6 PE=1 SV=5	[more]

BLAST of CmoCh01G002230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GC93	3.8e-118	95.85	60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111452826 PE=3 SV=1	[more]
A0A6J1KGX0	9.4e-117	94.61	60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111493107 PE=3 SV=1	[more]
A0A6J1F5G0	1.1e-112	90.87	60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111442321 PE=3 SV=1	[more]
A0A0A0L9J7	1.8e-112	90.87	60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_3G698560 PE=3 SV=1	[more]
A0A5D3CKB9	6.9e-112	90.46	60S ribosomal protein L6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of CmoCh01G002230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949498.1	7.8e-118	95.85	60S ribosomal protein L6-2-like [Cucurbita moschata] >KAG7036570.1 60S ribosomal...	[more]
XP_023525962.1	1.1e-116	95.44	60S ribosomal protein L6-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998493.1	1.9e-116	94.61	60S ribosomal protein L6-2-like [Cucurbita maxima]	[more]
KAG6606864.1	2.5e-116	95.02	60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023528566.1	2.6e-113	91.70	60S ribosomal protein L6-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh01G002230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74060.1	3.9e-99	78.15	Ribosomal protein L6 family protein	[more]
AT1G18540.1	6.7e-99	76.67	Ribosomal protein L6 family protein	[more]
AT1G74050.1	6.7e-99	78.15	Ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 95..179 e-value: 3.3E-17 score: 64.3
IPR005568	Ribosomal protein L6, N-terminal	PFAM	PF03868	Ribosomal_L6e_N	coord: 7..58 e-value: 6.6E-15 score: 55.1
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 134..241 e-value: 3.5E-39 score: 133.8
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 1..241
IPR000915	60S ribosomal protein L6E	PROSITE	PS01170	RIBOSOMAL_L6E	coord: 135..153
None	No IPR available	PANTHER	PTHR10715:SF9	60S RIBOSOMAL PROTEIN L6	coord: 1..241
IPR041997	Ribosomal Protein L6, KOW domain	CDD	cd13156	KOW_RPL6	coord: 79..241 e-value: 2.13617E-76 score: 225.89
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 94..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G002230.1	CmoCh01G002230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome