CmoCh01G001980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G001980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 889571 .. 889858 (-)
RNA-Seq Expression	CmoCh01G001980
Synteny	CmoCh01G001980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTGACAGCATTCTAGCTTCTCCTCGCAGGAGGACCCCAACATTTAGGAAGCAGTTTCCTGCAAATGAGTTGGGAAGTTGGTCAACTCTCTTCAATCGACATCGCTTCCTCCTAACCGCACTGGCACTCTTGACTTGCCTTTGCACAATCTACCTTTATTTTGCAATCACATTAGGGGCTACTGCATCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAAGAATTGTGTCATCTGGAGCATGCCAAGGCTTCTCTGGCTAAAGGCAAATTGAAATTTCTATGA

mRNA sequence

ATGGTTCTTGACAGCATTCTAGCTTCTCCTCGCAGGAGGACCCCAACATTTAGGAAGCAGTTTCCTGCAAATGAGTTGGGAAGTTGGTCAACTCTCTTCAATCGACATCGCTTCCTCCTAACCGCACTGGCACTCTTGACTTGCCTTTGCACAATCTACCTTTATTTTGCAATCACATTAGGGGCTACTGCATCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAAGAATTGTGTCATCTGGAGCATGCCAAGGCTTCTCTGGCTAAAGGCAAATTGAAATTTCTATGA

Coding sequence (CDS)

ATGGTTCTTGACAGCATTCTAGCTTCTCCTCGCAGGAGGACCCCAACATTTAGGAAGCAGTTTCCTGCAAATGAGTTGGGAAGTTGGTCAACTCTCTTCAATCGACATCGCTTCCTCCTAACCGCACTGGCACTCTTGACTTGCCTTTGCACAATCTACCTTTATTTTGCAATCACATTAGGGGCTACTGCATCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAAGAATTGTGTCATCTGGAGCATGCCAAGGCTTCTCTGGCTAAAGGCAAATTGAAATTTCTATGA

Protein sequence

MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITLGATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL

Homology

[Close]

BLAST of CmoCh01G001980 vs. ExPASy TrEMBL
Match: A0A6J1GA22 (uncharacterized protein LOC111452323 OS=Cucurbita moschata OX=3662 GN=LOC111452323 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.2e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL
Sbjct: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. ExPASy TrEMBL
Match: A0A6J1KCQ7 (uncharacterized protein LOC111493123 OS=Cucurbita maxima OX=3661 GN=LOC111493123 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.7e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLD+ILASPRRRTPTFRK FPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL
Sbjct: 1  MVLDNILASPRRRTPTFRKHFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. ExPASy TrEMBL
Match: A0A6J1DJ35 (uncharacterized protein LOC111020959 OS=Momordica charantia OX=3673 GN=LOC111020959 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLDSILASP RR+P+FRKQFPANELGSWS LFNRHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSVLFNRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSCSGLTGAQKELC +EHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCRMEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. ExPASy TrEMBL
Match: A0A0A0L9L6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLDSILASP RR+P+FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSCSGLTG Q+ELC LEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. ExPASy TrEMBL
Match: A0A5D3DCR7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00060 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-38
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLDSILASP RR+P+FRKQFPANELGSWSTLF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSCSGLTG Q+ELC LEHAKASLA GKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLANGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. NCBI nr
Match: XP_022948745.1 (uncharacterized protein LOC111452323 [Cucurbita moschata] >XP_022948746.1 uncharacterized protein LOC111452323 [Cucurbita moschata])

HSP 1 Score: 187.2 bits (474), Expect = 6.6e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL
Sbjct: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. NCBI nr
Match: XP_022998509.1 (uncharacterized protein LOC111493123 [Cucurbita maxima] >XP_022998510.1 uncharacterized protein LOC111493123 [Cucurbita maxima])

HSP 1 Score: 184.1 bits (466), Expect = 5.6e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLD+ILASPRRRTPTFRK FPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL
Sbjct: 1  MVLDNILASPRRRTPTFRKHFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. NCBI nr
Match: KAG6606842.1 (hypothetical protein SDJN03_00184, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.7 bits (465), Expect = 7.3e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLDSILASPRRRTPTFRK FPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL
Sbjct: 1  MVLDSILASPRRRTPTFRKHFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GA+ASSCSGLTGAQKELCHLEHAKASLAKGKLKFL
Sbjct: 61 GASASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. NCBI nr
Match: XP_023523364.1 (uncharacterized protein LOC111787579 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLDSILASPRRRTPTFRK FPANELGSWSTLFNRHR+LLTALALLTCLCTIYLYFAITL
Sbjct: 1  MVLDSILASPRRRTPTFRKHFPANELGSWSTLFNRHRYLLTALALLTCLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSC+GLTGAQKELCHLEHAKASLAKGKLKFL
Sbjct: 61 GATASSCAGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. NCBI nr
Match: XP_022153454.1 (uncharacterized protein LOC111020959 [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-39
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLDSILASP RR+P+FRKQFPANELGSWS LFNRHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSVLFNRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 96
          GATASSCSGLTGAQKELC +EHAKASLAKGKLKFL
Sbjct: 61 GATASSCSGLTGAQKELCRMEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh01G001980 vs. TAIR 10
Match: AT1G16170.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-24
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLD +++SP RR    +KQ+  +ELGSWSTL  RH++LLTALALL  LCT+YLYFA+TL
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKF 95
          GA  SSC GLTG  K +C L+  +A L+KGKLKF
Sbjct: 61 GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

[Close]

BLAST of CmoCh01G001980 vs. TAIR 10
Match: AT1G79660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 103.6 bits (257), Expect = 8.9e-23
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60
          MVLD I++SP RR    +KQ+  ++LGS ST+  RHRFLLTA+ LL  LCTIY+YFA+TL
Sbjct: 1  MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKF 95
          GA    CSG+TG  K +C +EH +AS + GKLKF
Sbjct: 61 GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92

The following BLAST results are available for this feature:

BLAST of CmoCh01G001980 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G001980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA22	3.2e-44	100.00	uncharacterized protein LOC111452323 OS=Cucurbita moschata OX=3662 GN=LOC1114523...	[more]
A0A6J1KCQ7	2.7e-43	97.89	uncharacterized protein LOC111493123 OS=Cucurbita maxima OX=3661 GN=LOC111493123...	[more]
A0A6J1DJ35	1.1e-39	92.63	uncharacterized protein LOC111020959 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L9L6	5.3e-39	91.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1	[more]
A0A5D3DCR7	2.0e-38	90.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh01G001980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948745.1	6.6e-44	100.00	uncharacterized protein LOC111452323 [Cucurbita moschata] >XP_022948746.1 unchar...	[more]
XP_022998509.1	5.6e-43	97.89	uncharacterized protein LOC111493123 [Cucurbita maxima] >XP_022998510.1 uncharac...	[more]
KAG6606842.1	7.3e-43	97.89	hypothetical protein SDJN03_00184, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023523364.1	1.2e-42	96.84	uncharacterized protein LOC111787579 [Cucurbita pepo subsp. pepo]	[more]
XP_022153454.1	2.2e-39	92.63	uncharacterized protein LOC111020959 [Momordica charantia]	[more]

BLAST of CmoCh01G001980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16170.1	6.2e-24	61.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G79660.1	8.9e-23	57.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774	EPHRIN-A3 PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G001980.1	CmoCh01G001980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane