CmoCh01G001970 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G001970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 886876 .. 887355 (-)
RNA-Seq ExpressionCmoCh01G001970
SyntenyCmoCh01G001970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGGTCAGCATCACTGTATGCTGAGATTCTTGAACCTGGTAGGCTCGGTTTCTTGATTCTTCTTGATCAATTATCGGTTCCGTCCTCAATCTCTGTTCATCATTCTCTCATACGGCAATTGGAATTCTCAGCCTTTTGGTGCTTCATTCGCTCGCCTCTGCAATCTAGGTTTTCTTTCATCTTTTGATGTTGAATTCTTAACTGAATAGGTTTTCCCCTGTGGAATCTTTCATTTCCGAGCTCGTGAGAAGGAATTCTATATTTGTATCTGTTGTACGCTCTCTGAGAACCGCCGCCTTTGTTCTCCTTGGGAGGTGATTCTCTTTTTCTTTTCGTCCTCTGTTGTTTCGTTATATGATTTGATACCTGCGGTTGCAGTTACATTTTTAGGGTTGAGTTATTCCAGTTAGAAATAGATTTGGTTGAGAATTACTGATTTGTTACTTTCCCTTGTAGACTGCACGAGCATTGCTAA

mRNA sequence

ATGATATGGTCAGCATCACTGTATGCTGAGATTCTTGAACCTGGTAGGCTCGGTTTCTTGATTCTTCTTGATCAATTATCGGTTCCGTCCTCAATCTCTGTTCATCATTCTCTCATACGGCAATTGGAATTCTCAGCCTTTTGGTGCTTCATTCGCTCGCCTCTGCAATCTAGGTTTTCCCCTGTGGAATCTTTCATTTCCGAGCTCGTGAGAAGGAATTCTATATTTGTATCTGTTGTACGCTCTCTGAGAACCGCCGCCTTTGTTCTCCTTGGGAGACTGCACGAGCATTGCTAA

Coding sequence (CDS)

ATGATATGGTCAGCATCACTGTATGCTGAGATTCTTGAACCTGGTAGGCTCGGTTTCTTGATTCTTCTTGATCAATTATCGGTTCCGTCCTCAATCTCTGTTCATCATTCTCTCATACGGCAATTGGAATTCTCAGCCTTTTGGTGCTTCATTCGCTCGCCTCTGCAATCTAGGTTTTCCCCTGTGGAATCTTTCATTTCCGAGCTCGTGAGAAGGAATTCTATATTTGTATCTGTTGTACGCTCTCTGAGAACCGCCGCCTTTGTTCTCCTTGGGAGACTGCACGAGCATTGCTAA

Protein sequence

MIWSASLYAEILEPGRLGFLILLDQLSVPSSISVHHSLIRQLEFSAFWCFIRSPLQSRFSPVESFISELVRRNSIFVSVVRSLRTAAFVLLGRLHEHC
Homology
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BLAST of CmoCh01G001970 vs. NCBI nr
Match: KAG7036547.1 (hypothetical protein SDJN02_00166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1  MIWSASLYAEILEPGRLGFLILLDQLSVPSSISVHHSLIRQLEFSAFWCFIRSPLQSRFS 60
          MIWSASLYAEILEPGRLGFLILLDQLSVPSSISVHHSLIRQLEFSAFWCFIRSPLQSRFS
Sbjct: 1  MIWSASLYAEILEPGRLGFLILLDQLSVPSSISVHHSLIRQLEFSAFWCFIRSPLQSRFS 60

Query: 61 PVESFISELVRRNSIFVSVVRSLRTAAFVLL 92
          PV+ FISELVRRNSIFVSVVRSLRTAAF+ +
Sbjct: 61 PVKYFISELVRRNSIFVSVVRSLRTAAFIFV 91

The following BLAST results are available for this feature:
BLAST of CmoCh01G001970 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G001970 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G001970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036547.11.9e-3894.51hypothetical protein SDJN02_00166, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh01G001970 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G001970.1CmoCh01G001970.1mRNA