CmoCh01G001790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G001790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ethylene-responsive transcription factor ERF003-like
Location	Cmo_Chr01: 785316 .. 786097 (-)
RNA-Seq Expression	CmoCh01G001790
Synteny	CmoCh01G001790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACTCTTACAGTCTTTCTCTCTCTAAAATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTGCTGTAACTCTTCTAATATCACTTCTCCTCTACTTTTGTACTATAAATTTTTAACTAATTAATGAACTAAATCGTTACTTTATTATTTTTAAATATCAAAATACGTTTCTTTAATAAATTATGATATTATATAAAAAATTGATTTTTTTTTTTTTTTTCCTTTTTGTCTCTCCTTCAGGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACGCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCGACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCGTCAGCCCACCAATTTCGACGACGGCTATGGTGCCTCCGGCGTTCACTTTCCGGAGACGGACTCCAAGTGGGTCGCCGGCGGTGAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA

mRNA sequence

TCACTCTTACAGTCTTTCTCTCTCTAAAATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTGCTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACGCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCGACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCGTCAGCCCACCAATTTCGACGACGGCTATGGTGCCTCCGGCGTTCACTTTCCGGAGACGGACTCCAAGTGGGTCGCCGGCGGTGAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA

Coding sequence (CDS)

ATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTGCTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCACAACGCGCCACGTCACTCTTTGTCCGCGCCGCCGCCGTCCTCGAACCTTCTAACCCCGACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCGTCAGCCCACCAATTTCGACGACGGCTATGGTGCCTCCGGCGTTCACTTTCCGGAGACGGACTCCAAGTGGGTCGCCGGCGGTGAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTGCTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATTATCTTAATGATATTGAGTCTACAAATAATTAA

Protein sequence

MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSRRQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNNNNYLNDIESTNN

Homology

[Close]

BLAST of CmoCh01G001790 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.4e-41
Identity = 103/188 (54.79%), Postives = 115/188 (61.17%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCP--- 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAAR+MC P   
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKK-QFPNKTHFSDRKSA 120
            N P N NA       P  SS LL+ TL  KL KC  AS QM K+ Q   +T  +  +SA
Sbjct: 61  TNFPYNPNA------IPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSA 120

Query: 121 HPSRRQPTNFDDGYGASGVHF-----PETDSKWVAGGE--AQEIARLEDDHVEQMIQELL 178
                      DG  A+  H        T+ KW  G     Q    LE+DH+EQMI+ELL
Sbjct: 121 D---------SDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELL 173

[Close]

BLAST of CmoCh01G001790 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.0e-31
Identity = 87/178 (48.88%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMC---CP 60
           MARPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAAR+MC     
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 120
            N P N NA + S      SS LL+ TLI KL +C  AS QM +   P+    + R  A 
Sbjct: 61  TNFPYNPNASQSS------SSKLLSATLIAKLHRCYMASLQMTR---PSSLPEAPRIIA- 120

Query: 121 PSRRQPTNFDDGYGASGVHFPE------------TDSKWVAGGEAQEIARLEDDHVEQ 164
                P N   G GA  +  P+             D K V    +Q+   LE+DH+ Q
Sbjct: 121 ----SPNNAVKGIGADAMLLPKKREQEEQETGGNLDFKKVKVECSQQFKPLEEDHIAQ 164

[Close]

BLAST of CmoCh01G001790 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.3e-19
Identity = 75/200 (37.50%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPN---NLPT 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA +M   N   N P 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NHN-----------APRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFS 125
           N+N               S  +   SS+ L+  L  KL+KC        K   P+ T   
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC-------CKSPSPSLTCLR 124

Query: 126 -DRKSAHP---SRRQPTNFDDGYGASGVHFPETDSKWVA-----------------GGEA 171
            D  S+H     +R  +  D  +  +    P + S+                    GG  
Sbjct: 125 LDTASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGGSR 184

[Close]

BLAST of CmoCh01G001790 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPN---NLPT 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA +M   N   N P 
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 --NHNAPRH--SLSAPPPSSNLLTPTLIEKLQK 92
            +     H   +++P  S   L+  L  KL+K
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRK 97

[Close]

BLAST of CmoCh01G001790 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.3e-16
Identity = 67/177 (37.85%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIM---CCPNNLPT 65
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA +M       N P 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66  NHNAPRHSL--SAPPPSSNLLTPTLIEKLQK-CRTASFQMVKKQFPN-KTHFSDRKSAHP 125
             +   +SL  ++   S   L+  L  KL+K C+  +  +   +  N  +H    +    
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 126 SRRQP-----TNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLD 171
           S+  P         D   A      ET+   V   + QE    +D    QMI+ELL+
Sbjct: 125 SKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQE----DDQMAMQMIEELLN 177

[Close]

BLAST of CmoCh01G001790 vs. ExPASy TrEMBL
Match: A0A6J1GC95 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111452652 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.1e-107
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120
           PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180
           RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 181 NNYLNDIESTNN 193
           NNYLNDIESTNN
Sbjct: 181 NNYLNDIESTNN 192

[Close]

BLAST of CmoCh01G001790 vs. ExPASy TrEMBL
Match: A0A6J1KDM8 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111492899 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 182/192 (94.79%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120
           PTN NAP HSLSAPPP SNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNRNAPLHSLSAPPP-SNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180
            QPTN DD YG+SGVHFPETD+KWVAG EAQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 PQPTNLDDAYGSSGVHFPETDAKWVAGEEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 181 NNYLNDIESTNN 193
           NN+LNDIESTNN
Sbjct: 181 NNHLNDIESTNN 191

[Close]

BLAST of CmoCh01G001790 vs. ExPASy TrEMBL
Match: A0A1S3BY29 (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103494684 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.1e-63
Identity = 129/183 (70.49%), Postives = 143/183 (78.14%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCC-PNN 60
           M RPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAA IMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 61  LPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPS 120
           L TNH+AP H  S   PSS LLTPTLIEKLQ+CR AS QM K Q      F+ RKSA P+
Sbjct: 61  LSTNHSAPHHP-SPASPSSKLLTPTLIEKLQRCRMASLQMTKAQ------FAVRKSADPT 120

Query: 121 RRQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPN 180
           +   T  + G      H+PE +++WV+  E +E+ RLEDDHVEQMIQELLDLGSFEFCPN
Sbjct: 121 QSPATKLEGG------HWPEKEARWVSSREVEEVRRLEDDHVEQMIQELLDLGSFEFCPN 170

Query: 181 NNN 183
           NNN
Sbjct: 181 NNN 170

[Close]

BLAST of CmoCh01G001790 vs. ExPASy TrEMBL
Match: A0A0A0KVJ4 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006210 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.2e-62
Identity = 132/193 (68.39%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCC-PNN 60
           M RPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAA IMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 61  LPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPS 120
           L TNH+A  H  SA P SS LLTPT IEKLQ+CR AS QM K Q      F+ RKSA P+
Sbjct: 61  LSTNHSASHHPSSA-PLSSKLLTPTSIEKLQRCRMASLQMTKAQ------FAVRKSADPT 120

Query: 121 RRQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPN 180
           +   T  D G      H+PE  ++WV   E +E+ RLED+HVEQMIQELLDLGSFEFCPN
Sbjct: 121 QSPATKLDGG------HWPEKAARWVPSREVEEVRRLEDEHVEQMIQELLDLGSFEFCPN 180

Query: 181 NNNYLNDIESTNN 193
           NNN  +   STNN
Sbjct: 181 NNNNHHHFGSTNN 180

[Close]

BLAST of CmoCh01G001790 vs. ExPASy TrEMBL
Match: A0A6J1DIX5 (ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3673 GN=LOC111020953 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 7.6e-61
Identity = 131/184 (71.20%), Postives = 136/184 (73.91%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60
           MARPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNHNAP---RHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 120
            +NHNAP     S S   P S LLTPTLI+KL+KCR ASFQM KK+ P KTH SDR    
Sbjct: 61  SSNHNAPPQYSSSASTLGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLSDR---- 120

Query: 121 PSRRQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFC 180
            SRR     D G    GV  PET          QE  RLEDDHVEQMIQELLDLGSF FC
Sbjct: 121 -SRRPAAKLDGG----GVQSPET----------QEFHRLEDDHVEQMIQELLDLGSFHFC 165

Query: 181 PNNN 182
           PNNN
Sbjct: 181 PNNN 165

[Close]

BLAST of CmoCh01G001790 vs. NCBI nr
Match: XP_022949239.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])

HSP 1 Score: 399.1 bits (1024), Expect = 2.2e-107
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120
           PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180
           RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 181 NNYLNDIESTNN 193
           NNYLNDIESTNN
Sbjct: 181 NNYLNDIESTNN 192

[Close]

BLAST of CmoCh01G001790 vs. NCBI nr
Match: KAG7036532.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397.9 bits (1021), Expect = 5.0e-107
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 81

Query: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120
           PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 82  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 141

Query: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180
           RQPTNFDDGYGASGVHFPETDSKWVAGG+AQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 142 RQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 201

Query: 181 NNYLNDIESTNN 193
           NNYLNDIESTNN
Sbjct: 202 NNYLNDIESTNN 213

[Close]

BLAST of CmoCh01G001790 vs. NCBI nr
Match: KAG6606826.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.0 bits (1016), Expect = 1.9e-106
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120
           PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180
           RQPTNFDDGYGASGVHFPETDSKWVAGG+AQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 181 NNYLNDIESTNN 193
           NNYLNDIE TNN
Sbjct: 181 NNYLNDIEPTNN 192

[Close]

BLAST of CmoCh01G001790 vs. NCBI nr
Match: XP_023525763.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 185/192 (96.35%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120
           PTNHN+PRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNHNSPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180
             PTN +DGYGASGVH PETD+KWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 PHPTNLNDGYGASGVHLPETDAKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 181 NNYLNDIESTNN 193
           NNYLNDIESTNN
Sbjct: 181 NNYLNDIESTNN 192

[Close]

BLAST of CmoCh01G001790 vs. NCBI nr
Match: XP_022998174.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita maxima])

HSP 1 Score: 372.5 bits (955), Expect = 2.2e-99
Identity = 182/192 (94.79%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60
           MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120
           PTN NAP HSLSAPPP SNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR
Sbjct: 61  PTNRNAPLHSLSAPPP-SNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180
            QPTN DD YG+SGVHFPETD+KWVAG EAQEIARLEDDHVEQMIQELLDLGSFEFCPNN
Sbjct: 121 PQPTNLDDAYGSSGVHFPETDAKWVAGEEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

Query: 181 NNYLNDIESTNN 193
           NN+LNDIESTNN
Sbjct: 181 NNHLNDIESTNN 191

[Close]

BLAST of CmoCh01G001790 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 168.3 bits (425), Expect = 6.0e-42
Identity = 103/188 (54.79%), Postives = 115/188 (61.17%), Query Frame = 0


Query: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCP--- 60
           MARPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAAR+MC P   
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  NNLPTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKK-QFPNKTHFSDRKSA 120
            N P N NA       P  SS LL+ TL  KL KC  AS QM K+ Q   +T  +  +SA
Sbjct: 61  TNFPYNPNA------IPTSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSA 120

Query: 121 HPSRRQPTNFDDGYGASGVHF-----PETDSKWVAGGE--AQEIARLEDDHVEQMIQELL 178
                      DG  A+  H        T+ KW  G     Q    LE+DH+EQMI+ELL
Sbjct: 121 D---------SDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELL 173

[Close]

BLAST of CmoCh01G001790 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-20
Identity = 75/200 (37.50%), Postives = 99/200 (49.50%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPN---NLPT 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA +M   N   N P 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NHN-----------APRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFS 125
           N+N               S  +   SS+ L+  L  KL+KC        K   P+ T   
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKC-------CKSPSPSLTCLR 124

Query: 126 -DRKSAHP---SRRQPTNFDDGYGASGVHFPETDSKWVA-----------------GGEA 171
            D  S+H     +R  +  D  +  +    P + S+                    GG  
Sbjct: 125 LDTASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGGSR 184

[Close]

BLAST of CmoCh01G001790 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-17
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPN---NLPT 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA +M   N   N P 
Sbjct: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66 --NHNAPRH--SLSAPPPSSNLLTPTLIEKLQK 92
            +     H   +++P  S   L+  L  KL+K
Sbjct: 65 VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRK 97

[Close]

BLAST of CmoCh01G001790 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-17
Identity = 67/177 (37.85%), Postives = 92/177 (51.98%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIM---CCPNNLPT 65
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA +M       N P 
Sbjct: 5   KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66  NHNAPRHSL--SAPPPSSNLLTPTLIEKLQK-CRTASFQMVKKQFPN-KTHFSDRKSAHP 125
             +   +SL  ++   S   L+  L  KL+K C+  +  +   +  N  +H    +    
Sbjct: 65  IKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQKRAG 124

Query: 126 SRRQP-----TNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLD 171
           S+  P         D   A      ET+   V   + QE    +D    QMI+ELL+
Sbjct: 125 SKTSPNWVKLVELGDKVNARPGGDIETNKMKVRNEDVQE----DDQMAMQMIEELLN 177

[Close]

BLAST of CmoCh01G001790 vs. TAIR 10
Match: AT4G13620.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-15
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 4   PQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIM 55
           P + YRGVRQRHWG WV+EIR P  +TR+WLGTFETAE AA AYD AA I+
Sbjct: 228 PTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYIL 278

The following BLAST results are available for this feature:

BLAST of CmoCh01G001790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AW5	8.4e-41	54.79	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	6.0e-31	48.88	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]
Q9XI33	5.3e-19	37.50	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LFN7	1.9e-16	53.76	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q3E958	9.3e-16	37.85	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CmoCh01G001790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GC95	1.1e-107	100.00	ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KDM8	1.1e-99	94.79	ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661...	[more]
A0A1S3BY29	8.1e-63	70.49	ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KVJ4	5.2e-62	68.39	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006210 PE=...	[more]
A0A6J1DIX5	7.6e-61	71.20	ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3...	[more]

BLAST of CmoCh01G001790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949239.1	2.2e-107	100.00	ethylene-responsive transcription factor ERF003-like [Cucurbita moschata]	[more]
KAG7036532.1	5.0e-107	99.48	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
KAG6606826.1	1.9e-106	98.96	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_023525763.1	2.6e-103	96.35	ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo...	[more]
XP_022998174.1	2.2e-99	94.79	ethylene-responsive transcription factor ERF003-like [Cucurbita maxima]	[more]

BLAST of CmoCh01G001790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25190.1	6.0e-42	54.79	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	3.8e-20	37.50	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	1.3e-17	53.76	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	6.6e-17	37.85	Integrase-type DNA-binding superfamily protein	[more]
AT4G13620.1	1.3e-15	70.59	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 30..46 score: 70.91 coord: 8..19 score: 66.97
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 7..67 e-value: 1.5E-29 score: 114.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 7..52 e-value: 3.4E-11 score: 43.2
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 7..67 score: 18.91345
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 6..55 e-value: 2.62763E-28 score: 98.883
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 6..66 e-value: 4.1E-21 score: 76.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..121
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..178
None	No IPR available	PANTHER	PTHR31194:SF48	ETHYLENE RESPONSE FACTOR	coord: 1..178
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 7..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G001790.1	CmoCh01G001790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity