CmoCh01G001150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G001150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein L37
LocationCmo_Chr01: 509146 .. 510225 (-)
RNA-Seq ExpressionCmoCh01G001150
SyntenyCmoCh01G001150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAACCCTAAACCTTCGCAATATAAGGCCTGCCGCTGATTGCTCATTTCTCTTTGGACGGAAGAGGAATTCGAAGGCTTCATCGTCGAATCGGATTAAATGGTAGCGGCGAACATTCTTCAAATTCGTCTAATCTCTTCGCTTTCTATATGAATGTTGTTGAAATCTTCATTCTAGTTCGTTAATCAATTTGTTTTTTGATCTTTAAATTTTAGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTTAGGTGTGGCCGTCGCAGCTTCCACCTGCAGAAGAGTCGATGTTCCGCCTGTGCATTTCCGGCTGCCCGTAAGCGAAAATGTAAGTTCGTCTTAATAAGTTTGCAACTTGATTGGGTTTCTTCATCATTGCACAATTAAATCTGTTTTATTTATTTTTTCATTAGATCCTCCATTATCGACCCAAATAGCAGTGCATTCTTTATGTATATGCTAATTTGTTCGAGTGAATTCACTTTACTTTTGGATTTAGATAACTGGAGCGTGAAGGCGATCAGGAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGCCATGTTCCACGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTAGTCTACTCTGCATTTTCTTCTCATCAATGTGGTTATTGTGGCATTCTGGTATTTCAATTACATTTGGGTTCTGTGATTAGGTACTGAAGCAGCGCCCAGGAGCAAAGGAGCAGCAGCGTCTGCCTAAAACATTGAAGGTTAATTGTGGCATAACTTTAGTACTCTATTGTAGTTTCTAGGTGGATTTTGTGTTTTTTGGACCAGAATCTATATGAATTTTGTTGGATAATGTCATTACCTTCAATACCGAAGCTCATTTCATTTCTTACAGTTTTGTTTATGGAATTCAGATGATTGGGTTCAAACCACTTGAGTCGTATACTTATTAATCATTTTATGAGGTTAATACTGATCGATATTATCACCCTGAAGGCTGAGGTAGAATGTATTAGTAAGAAAGTTTGGATGTTAAAATCATGAGTTAATGCTTGAATTGTTCCTTAATCTGGG

mRNA sequence

TCAAACCCTAAACCTTCGCAATATAAGGCCTGCCGCTGATTGCTCATTTCTCTTTGGACGGAAGAGGAATTCGAAGGCTTCATCGTCGAATCGGATTAAATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTTAGGTGTGGCCGTCGCAGCTTCCACCTGCAGAAGAGTCGATGTTCCGCCTGTGCATTTCCGGCTGCCCGTAAGCGAAAATATAACTGGAGCGTGAAGGCGATCAGGAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGCCATGTTCCACGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTGAAGCAGCGCCCAGGAGCAAAGGAGCAGCAGCGTCTGCCTAAAACATTGAAGGTTAATTGTGGCATAACTTTAGTACTCTATTGTAGTTTCTAGGTGGATTTTGTGTTTTTTGGACCAGAATCTATATGAATTTTGTTGGATAATGTCATTACCTTCAATACCGAAGCTCATTTCATTTCTTACAGTTTTGTTTATGGAATTCAGATGATTGGGTTCAAACCACTTGAGTCGTATACTTATTAATCATTTTATGAGGTTAATACTGATCGATATTATCACCCTGAAGGCTGAGGTAGAATGTATTAGTAAGAAAGTTTGGATGTTAAAATCATGAGTTAATGCTTGAATTGTTCCTTAATCTGGG

Coding sequence (CDS)

ATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTTAGGTGTGGCCGTCGCAGCTTCCACCTGCAGAAGAGTCGATGTTCCGCCTGTGCATTTCCGGCTGCCCGTAAGCGAAAATATAACTGGAGCGTGAAGGCGATCAGGAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGCCATGTTCCACGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTGAAGCAGCGCCCAGGAGCAAAGGAGCAGCAGCGTCTGCCTAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA
Homology
[Close]
BLAST of CmoCh01G001150 vs. ExPASy Swiss-Prot
Match: Q8LEM8 (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 84/95 (88.42%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PRSK +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy Swiss-Prot
Match: Q43292 (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 6.4e-42
Identity = 83/95 (87.37%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PR+KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy Swiss-Prot
Match: Q8LFH7 (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.4e-41
Identity = 81/95 (85.26%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGT+A PR+K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy Swiss-Prot
Match: Q90YT1 (60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 9.6e-30
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMR+M+ V RRF++GFREGT   PR    AAS+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy Swiss-Prot
Match: P79244 (60S ribosomal protein L37 OS=Bos taurus OX=9913 GN=RPL37 PE=3 SV=4)

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-29
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMR+++ V RRF+ GFREGT   P+    AAS+
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASS 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy TrEMBL
Match: A0A6J1KAY5 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy TrEMBL
Match: A0A6J1D8M5 (Ribosomal protein L37 OS=Momordica charantia OX=3673 GN=LOC111018628 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy TrEMBL
Match: A0A6J1GAE3 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111452398 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy TrEMBL
Match: A0A6J1HHN6 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111464162 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.4e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of CmoCh01G001150 vs. ExPASy TrEMBL
Match: A0A6J1JVQ3 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111488750 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]
BLAST of CmoCh01G001150 vs. NCBI nr
Match: XP_022150495.1 (60S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022998691.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023523625.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6606766.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 6.0e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of CmoCh01G001150 vs. NCBI nr
Match: XP_038902074.1 (60S ribosomal protein L37-3 [Benincasa hispida])

HSP 1 Score: 189.5 bits (480), Expect = 1.3e-44
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTEAAPRSKGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of CmoCh01G001150 vs. NCBI nr
Match: XP_022964011.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6593459.1 60S ribosomal protein L37-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 1.3e-44
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of CmoCh01G001150 vs. NCBI nr
Match: XP_022953178.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022992450.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023548197.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6575534.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014078.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]
BLAST of CmoCh01G001150 vs. NCBI nr
Match: XP_023000413.1 (60S ribosomal protein L37-3-like [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKS+CSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSQCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of CmoCh01G001150 vs. TAIR 10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 173.3 bits (438), Expect = 9.2e-44
Identity = 84/95 (88.42%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PRSK +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of CmoCh01G001150 vs. TAIR 10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 171.0 bits (432), Expect = 4.6e-43
Identity = 83/95 (87.37%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PR+KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of CmoCh01G001150 vs. TAIR 10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.9 bits (424), Expect = 3.9e-42
Identity = 81/95 (85.26%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGT+A PR+K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

The following BLAST results are available for this feature:
BLAST of CmoCh01G001150 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LEM81.3e-4288.4260S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1[more]
Q432926.4e-4287.3760S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2[more]
Q8LFH75.4e-4185.2660S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1[more]
Q90YT19.6e-3068.4260S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3[more]
P792444.8e-2966.3260S ribosomal protein L37 OS=Bos taurus OX=9913 GN=RPL37 PE=3 SV=4[more]
BLAST of CmoCh01G001150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KAY52.9e-45100.00Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1[more]
A0A6J1D8M52.9e-45100.00Ribosomal protein L37 OS=Momordica charantia OX=3673 GN=LOC111018628 PE=3 SV=1[more]
A0A6J1GAE32.9e-45100.00Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111452398 PE=3 SV=1[more]
A0A6J1HHN66.4e-4598.95Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111464162 PE=3 SV=1[more]
A0A6J1JVQ31.4e-4497.89Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111488750 PE=3 SV=1[more]
BLAST of CmoCh01G001150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150495.16.0e-45100.0060S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal ... [more]
XP_038902074.11.3e-4498.9560S ribosomal protein L37-3 [Benincasa hispida][more]
XP_022964011.11.3e-4498.9560S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S riboso... [more]
XP_022953178.13.0e-4497.8960S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022992450.1 60S riboso... [more]
XP_023000413.13.9e-4497.8960S ribosomal protein L37-3-like [Cucurbita maxima][more]
BLAST of CmoCh01G001150 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G16080.19.2e-4488.42Zinc-binding ribosomal protein family protein [more]
AT1G52300.14.6e-4387.37Zinc-binding ribosomal protein family protein [more]
AT1G15250.13.9e-4285.26Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011331Ribosomal protein L37ae/L37eGENE3D2.20.25.30coord: 1..87
e-value: 3.5E-46
score: 157.4
IPR001569Ribosomal protein L37ePFAMPF01907Ribosomal_L37ecoord: 3..53
e-value: 1.0E-25
score: 89.6
IPR001569Ribosomal protein L37eHAMAPMF_00547Ribosomal_L37ecoord: 2..53
score: 16.159836
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..95
NoneNo IPR availablePANTHERPTHR10768:SF31RIBOSOMAL PROTEIN L37coord: 1..94
NoneNo IPR availablePANTHERPTHR1076860S RIBOSOMAL PROTEIN L37coord: 1..94
IPR018267Ribosomal protein L37e, conserved sitePROSITEPS01077RIBOSOMAL_L37Ecoord: 4..23
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G001150.1CmoCh01G001150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome