CmoCh01G001110 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G001110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr01: 494314 .. 495376 (-)
RNA-Seq ExpressionCmoCh01G001110
SyntenyCmoCh01G001110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACATGTGAGCGGAAGTACAGGCGAAGAATGGCAGCTCCGACAAACATGCACAGGTGTTAGCCCGAGAGACGAGTTCTCACGAGCTTTCAGAAGATCACCACATGATTCAGGAACCACTTCCTATGTCCTCCTCCTCACCGCTTTCAATCTTTTTGCACACCAACCGATCCATGCTCAATTTCCGGTTTGCTTCTTTTGCTTTCAACCTCCGGTGCACGCTACCACTCGCTCGCCTTCCCCGATTTCCAATGCCGAAATTAGTTCGTCTTCAATCGGAGCCCTCATCGCCGTTGCTCGAACCACTCTAGCCCTGTTCCGGCGCATTTTAGTCACTCTCTCGGCCCTCTCGCTTTCTTCTTCCGCGATTTTAGAGGTACGCGTCGTTAATTCTTGCCTCTCTCTGATTTAAACTCTAGATTATTTGCATTTTGCTCGTGTCCTTCGATGTGTGTTAAATTGTGCGGATGGTTTTATTTTTTGTACAGAAATTTATGTTTTAGGTAATTTGTATAGAATTTATAATGGAGAAGTATGTTAATCTTTGTATATTGAATTCATTGATCATTTGTACTGAGAGCTCTTTCTCTTAAATGTTAATCTCTGTGTATTGAATTTATTGATCATCTGTACTGCTGTAATAGACTCACGATTATAACAATTAAAGGTTCAATACGATAACTCTAATAATTTATAGTTGAAACGATAAATTGTTTTGTGTCGATCGGACAGATTATTACGGAATGTCAACGTGAATGTCTTCTTGTTCGTGTTTTTTAATCAATCTTGGGTCCGTATAGAAATATATTAACCTGCTGCGGCAAAGAAATTAAGAAGTATTTAGAAAAATAAATAATCGATAGTTATAAGGATACTCTGCATTCATGAGGTGTTTATTTTCTCTGCTAATTGTAACTGTTTTTTTCTTTGGACATTTTTTTATATCCTTTGGGATATTAAGGTCGACATGATGCCATCCTGTTGATACTCAGGATTTTTCATCGTTTCTGTTTTTGTTGCTTTGGTCTTCCTTAGCATTCCATTCCCAGGTGCTACTAG

mRNA sequence

ATGGTTTACATATCACCACATGATTCAGGAACCACTTCCTATGTCCTCCTCCTCACCGCTTTCAATCTTTTTGCACACCAACCGATCCATGCTCAATTTCCGGTTTGCTTCTTTTGCTTTCAACCTCCGGTGCACGCTACCACTCGCTCGCCTTCCCCGATTTCCAATGCCGAAATTAGTTCGTCTTCAATCGGAGCCCTCATCGCCGTTGCTCGAACCACTCTAGCCCTGTTCCGGCGCATTTTAGTCACTCTCTCGGCCCTCTCGCTTTCTTCTTCCGCGATTTTAGAGCATTCCATTCCCAGGTGCTACTAG

Coding sequence (CDS)

ATGGTTTACATATCACCACATGATTCAGGAACCACTTCCTATGTCCTCCTCCTCACCGCTTTCAATCTTTTTGCACACCAACCGATCCATGCTCAATTTCCGGTTTGCTTCTTTTGCTTTCAACCTCCGGTGCACGCTACCACTCGCTCGCCTTCCCCGATTTCCAATGCCGAAATTAGTTCGTCTTCAATCGGAGCCCTCATCGCCGTTGCTCGAACCACTCTAGCCCTGTTCCGGCGCATTTTAGTCACTCTCTCGGCCCTCTCGCTTTCTTCTTCCGCGATTTTAGAGCATTCCATTCCCAGGTGCTACTAG

Protein sequence

MVYISPHDSGTTSYVLLLTAFNLFAHQPIHAQFPVCFFCFQPPVHATTRSPSPISNAEISSSSIGALIAVARTTLALFRRILVTLSALSLSSSAILEHSIPRCY
Homology
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BLAST of CmoCh01G001110 vs. NCBI nr
Match: KAG6606760.1 (putative plastidic glucose transporter 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MVYI-SPHDSGTTSYVLLLTAFNLFAHQPIHAQFPVCFFCFQPPVHATTRSPSPISNAEI 60
           MVYI SPHDSGTTSYVLLLTAFNLFAHQPIHAQFPVCFFCFQPPVHATTRSPSPISNAEI
Sbjct: 1   MVYIRSPHDSGTTSYVLLLTAFNLFAHQPIHAQFPVCFFCFQPPVHATTRSPSPISNAEI 60

Query: 61  SSSSIGALIAVARTTLALFRRILVTLSALSLSSSAILEHS 100
           SSSSIGALIAVARTTLALFRRILVTLSALSLSSSAILE++
Sbjct: 61  SSSSIGALIAVARTTLALFRRILVTLSALSLSSSAILENT 100

The following BLAST results are available for this feature:
BLAST of CmoCh01G001110 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G001110 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh01G001110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606760.11.5e-4197.00putative plastidic glucose transporter 3, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of CmoCh01G001110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G001110.1CmoCh01G001110.1mRNA