CmoCh01G001050 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCCGTATAGCTTATTACATGCTGAGGAAAGGAATTTGTAAGAGCAAGCTTATGGCCGACCTCACAAATCTCATGTCCAAACGCCGCAAAATCACCGGCAAAGCCATCGCGAATCTCATGTTCCACCACCAAGATGGTGCCGCCTCTGCCTTCTCCCTCGCCCCTTTTCGCCGTAACCACCACCCCGATGGCACCGCCAGTCACTACGAATTTAGCTGCCGCAACAGCCCTGCTTTTCCCAGCTTCCATTACTTTAACAAACGCCGTCGTTTCTTCACGTGTACTCAGACACCCAACACGCTGGACGATGACGTGGCCGCGATGAATGCTTTCAAGACTGTTTTGGAAGTTCTGAACAATGACATGGCGTCCCCTGCGCTACCCGAGTTTGGGCGAAGCCCGATGGTGGTGAGGCAGCTGAGAGTTACTGACTCGCCGTGTCCGGTTGCGGGAGCTGCCGTGGAGGACAGCCACGTGGATAAAGCGGCGGAGGAATTTATAAACCGGTTTTATAAGAAGCTTCGGTTACAGAAGATGGGGGAGTAA ATGGTCCGTATAGCTTATTACATGCTGAGGAAAGGAATTTGTAAGAGCAAGCTTATGGCCGACCTCACAAATCTCATGTCCAAACGCCGCAAAATCACCGGCAAAGCCATCGCGAATCTCATGTTCCACCACCAAGATGGTGCCGCCTCTGCCTTCTCCCTCGCCCCTTTTCGCCGTAACCACCACCCCGATGGCACCGCCAGTCACTACGAATTTAGCTGCCGCAACAGCCCTGCTTTTCCCAGCTTCCATTACTTTAACAAACGCCGTCGTTTCTTCACGTGTACTCAGACACCCAACACGCTGGACGATGACGTGGCCGCGATGAATGCTTTCAAGACTGTTTTGGAAGTTCTGAACAATGACATGGCGTCCCCTGCGCTACCCGAGTTTGGGCGAAGCCCGATGGTGGTGAGGCAGCTGAGAGTTACTGACTCGCCGTGTCCGGTTGCGGGAGCTGCCGTGGAGGACAGCCACGTGGATAAAGCGGCGGAGGAATTTATAAACCGGTTTTATAAGAAGCTTCGGTTACAGAAGATGGGGGAGTAA ATGGTCCGTATAGCTTATTACATGCTGAGGAAAGGAATTTGTAAGAGCAAGCTTATGGCCGACCTCACAAATCTCATGTCCAAACGCCGCAAAATCACCGGCAAAGCCATCGCGAATCTCATGTTCCACCACCAAGATGGTGCCGCCTCTGCCTTCTCCCTCGCCCCTTTTCGCCGTAACCACCACCCCGATGGCACCGCCAGTCACTACGAATTTAGCTGCCGCAACAGCCCTGCTTTTCCCAGCTTCCATTACTTTAACAAACGCCGTCGTTTCTTCACGTGTACTCAGACACCCAACACGCTGGACGATGACGTGGCCGCGATGAATGCTTTCAAGACTGTTTTGGAAGTTCTGAACAATGACATGGCGTCCCCTGCGCTACCCGAGTTTGGGCGAAGCCCGATGGTGGTGAGGCAGCTGAGAGTTACTGACTCGCCGTGTCCGGTTGCGGGAGCTGCCGTGGAGGACAGCCACGTGGATAAAGCGGCGGAGGAATTTATAAACCGGTTTTATAAGAAGCTTCGGTTACAGAAGATGGGGGAGTAA MVRIAYYMLRKGICKSKLMADLTNLMSKRRKITGKAIANLMFHHQDGAASAFSLAPFRRNHHPDGTASHYEFSCRNSPAFPSFHYFNKRRRFFTCTQTPNTLDDDVAAMNAFKTVLEVLNNDMASPALPEFGRSPMVVRQLRVTDSPCPVAGAAVEDSHVDKAAEEFINRFYKKLRLQKMGE Homology
BLAST of CmoCh01G001050 vs. ExPASy TrEMBL
Match: A0A6J1GBG7 (uncharacterized protein LOC111452647 OS=Cucurbita moschata OX=3662 GN=LOC111452647 PE=4 SV=1) HSP 1 Score: 367.9 bits (943), Expect = 2.5e-98 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of CmoCh01G001050 vs. ExPASy TrEMBL
Match: A0A6J1KB27 (uncharacterized protein LOC111492696 OS=Cucurbita maxima OX=3661 GN=LOC111492696 PE=4 SV=1) HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91 Identity = 172/183 (93.99%), Postives = 174/183 (95.08%), Query Frame = 0
BLAST of CmoCh01G001050 vs. ExPASy TrEMBL
Match: A0A0A0LBN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G462680 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 7.7e-71 Identity = 147/192 (76.56%), Postives = 156/192 (81.25%), Query Frame = 0
BLAST of CmoCh01G001050 vs. ExPASy TrEMBL
Match: A0A5A7U4P4 (Avr9/Cf-9 rapidly elicited protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00700 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 3.8e-70 Identity = 146/194 (75.26%), Postives = 154/194 (79.38%), Query Frame = 0
BLAST of CmoCh01G001050 vs. ExPASy TrEMBL
Match: A0A1S4DWM0 (uncharacterized protein LOC103490087 OS=Cucumis melo OX=3656 GN=LOC103490087 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 3.8e-70 Identity = 146/194 (75.26%), Postives = 154/194 (79.38%), Query Frame = 0
BLAST of CmoCh01G001050 vs. NCBI nr
Match: XP_022949233.1 (uncharacterized protein LOC111452647 [Cucurbita moschata]) HSP 1 Score: 367.9 bits (943), Expect = 5.2e-98 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of CmoCh01G001050 vs. NCBI nr
Match: KAG7036469.1 (hypothetical protein SDJN02_00086, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 364.0 bits (933), Expect = 7.5e-97 Identity = 179/182 (98.35%), Postives = 180/182 (98.90%), Query Frame = 0
BLAST of CmoCh01G001050 vs. NCBI nr
Match: XP_023524876.1 (uncharacterized protein LOC111788674 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 361.7 bits (927), Expect = 3.7e-96 Identity = 178/182 (97.80%), Postives = 179/182 (98.35%), Query Frame = 0
BLAST of CmoCh01G001050 vs. NCBI nr
Match: XP_022997865.1 (uncharacterized protein LOC111492696 [Cucurbita maxima]) HSP 1 Score: 345.1 bits (884), Expect = 3.6e-91 Identity = 172/183 (93.99%), Postives = 174/183 (95.08%), Query Frame = 0
BLAST of CmoCh01G001050 vs. NCBI nr
Match: KAG6606756.1 (hypothetical protein SDJN03_00098, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 330.5 bits (846), Expect = 9.2e-87 Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0
BLAST of CmoCh01G001050 vs. TAIR 10
Match: AT1G52140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 111.7 bits (278), Expect = 6.3e-25 Identity = 85/201 (42.29%), Postives = 107/201 (53.23%), Query Frame = 0
BLAST of CmoCh01G001050 vs. TAIR 10
Match: AT3G16330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 102.1 bits (253), Expect = 5.0e-22 Identity = 85/207 (41.06%), Postives = 103/207 (49.76%), Query Frame = 0
BLAST of CmoCh01G001050 vs. TAIR 10
Match: AT4G29110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14 Identity = 69/185 (37.30%), Postives = 89/185 (48.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|