CmoCh01G000650 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTAAGTACAGTAGGGCGATCGGAGTCCGTGGAGAACTAACCGGAGCTTGAGCAAAAGCCTCTAGTCCCAAACAATCGCAAGCCCTAGCAAGAAATCGGCGATATGGATTTCTCTGGAGGAGGAAACTGGAGCATGATCCCCAACATCCCTACTCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAGCAATTCTCCCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAACTATCCTTTCACCACCAGCCACAGCAATTCCAGCCCCAAATTCAACCCCAACAGCAATTTCAGCAGCAACAATCCTCCCCCCAATTTCAACAGCTACAACCCTCTCCTCAAATTCAGCCCCAACAACAACTCTCCACCCAATTCCAGCAGCAAATGCAACCCCAACATTTCCCCCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAATATCATTTTCAACAACAACAGCAGCGCCTTCTTCAACAGCAGCAGCAGCAACAGAAACAGCAGCAATATCATCAACACCAGTCTCTGGCTTCCCATTTTCATCTATTTCATGTAATGTCTTCAGAAACCCCTTAATTTTGAGTGCTCTCTAATCTCCGTGTTTTGCGTTTGTTGACTTTCTTGGATGTTTTGTGTGTTGTAGCTTGTGGAGAAATTAGCGGATGCGATTGAGACTGGAGTTAGAGATCAGCAATCGGATGCATTGGTATCAATTTTGATTCTTTTTTGAAATTTTCTCTCAAGATTAATCATACCGTTGTTTCCTCTAATAATTTGTTCATTTAACGTTTTGGAAGGTCAATGATCTGAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGGTAAAGTTGAAATGACAAATCCATCACTACAAATGAGATATCACAATTTTTTTTCTTTTTCATCTTTTGGTTGCAGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATCGAAGGTATGGTGGTAACCAATTTTTGGCTGTGGTTTGCATTAAACTGTCTTCTTCATCAATGGTCCTACTGATGATTCTCTATTAAAAAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGGCAAGGGCGAGCCTTAGCTACTTCTCACCCATTCCTAATTAGGTAATACTTCAATTTATATTTACAGTTTCTTTTCCGCTTATCTCAATTGTCCAAGGTTCTGTTTGGCTTTCCTTTTCTATGTTGTCATCTTTTGCTAAATGGTTTGGTTGTGGGGTTGAAATTGAAAAGTGGTCATCAGGAAAGAAATTCACACACCAAAACATAAATTATTGTACGAATATGAGCTTTCTGTTCAGAAAGGCTAAGATTAGTTTTTGTACATTCTCAACACTAAATGTTGTTTAGGTATCACCTTAGGACTGAGTTGAGGGTCATAGCGTTTCTGGTCTAAAAGTGGGTTCGAAGTTGAATACAATTCAACATTCGAGATTGTGTGTTGTATTGTTCTAGATGTCTTAGGTGTTAGCTGCATAAATAGTCAATCCACACTTTTTGTCGACATGTTTTCGGATGCGAGAAAAAGGAACGTAGAGTTACATTTCGGAGAGAGTAAACCAACTTGTATATGGATATGAATTTTCAATCGATTCAACGCCATCTGTGCGTTCCTTCAATTTTGGTTCAAAATCATTTAAATTGTCTCTTATCAAAAGAAAGGAAAAAGAAACTTGAAGTACATACTTATGAATTCTACACCATTTCAGGCCTGGCTAGCATCATGTACCTGTTTTGAAGGGATGTGAAAAGAGCTGCTTTCACCGGGTCTTGCAATTCCATGGAGGGGCTTTTATCTAATCTGCCTCCCTGCATTTCATAACACGATGATATGATGCACAGTTGAATTCAATCCTCTCTGTTCTCTTCGACTTTTTCAGGAACTCATGTTACCTCTAACGTATCTTGTACAGTTATTCCAACAGTTAACTTCTAAAATTAATGAACAGTAGATGCTTTCTCTAGCTTTCATTCTTTTAAATGTTAAATTTGGATTTGGATTTGGATTGATGCGAATATTAAGTTATAAAACATCATGAAGCTTGACCC TGTAAGTACAGTAGGGCGATCGGAGTCCGTGGAGAACTAACCGGAGCTTGAGCAAAAGCCTCTAGTCCCAAACAATCGCAAGCCCTAGCAAGAAATCGGCGATATGGATTTCTCTGGAGGAGGAAACTGGAGCATGATCCCCAACATCCCTACTCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAGCAATTCTCCCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAACTATCCTTTCACCACCAGCCACAGCAATTCCAGCCCCAAATTCAACCCCAACAGCAATTTCAGCAGCAACAATCCTCCCCCCAATTTCAACAGCTACAACCCTCTCCTCAAATTCAGCCCCAACAACAACTCTCCACCCAATTCCAGCAGCAAATGCAACCCCAACATTTCCCCCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAATATCATTTTCAACAACAACAGCAGCGCCTTCTTCAACAGCAGCAGCAGCAACAGAAACAGCAGCAATATCATCAACACCAGTCTCTGGCTTCCCATTTTCATCTATTTCATCTTGTGGAGAAATTAGCGGATGCGATTGAGACTGGAGTTAGAGATCAGCAATCGGATGCATTGGTCAATGATCTGAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATCGAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGGCAAGGGCGAGCCTTAGCTACTTCTCACCCATTCCTAATTAGGCCTGGCTAGCATCATGTACCTGTTTTGAAGGGATGTGAAAAGAGCTGCTTTCACCGGGTCTTGCAATTCCATGGAGGGGCTTTTATCTAATCTGCCTCCCTGCATTTCATAACACGATGATATGATGCACAGTTGAATTCAATCCTCTCTGTTCTCTTCGACTTTTTCAGGAACTCATGTTACCTCTAACGTATCTTGTACAGTTATTCCAACAGTTAACTTCTAAAATTAATGAACAGTAGATGCTTTCTCTAGCTTTCATTCTTTTAAATGTTAAATTTGGATTTGGATTTGGATTGATGCGAATATTAAGTTATAAAACATCATGAAGCTTGACCC ATGGATTTCTCTGGAGGAGGAAACTGGAGCATGATCCCCAACATCCCTACTCTCAGCAACTCCTCTAATCTTTCCAATCAAGAATCCCTTTACCTTCAACAGCAGCAATTCTCCCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAACTATCCTTTCACCACCAGCCACAGCAATTCCAGCCCCAAATTCAACCCCAACAGCAATTTCAGCAGCAACAATCCTCCCCCCAATTTCAACAGCTACAACCCTCTCCTCAAATTCAGCCCCAACAACAACTCTCCACCCAATTCCAGCAGCAAATGCAACCCCAACATTTCCCCCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAATATCATTTTCAACAACAACAGCAGCGCCTTCTTCAACAGCAGCAGCAGCAACAGAAACAGCAGCAATATCATCAACACCAGTCTCTGGCTTCCCATTTTCATCTATTTCATCTTGTGGAGAAATTAGCGGATGCGATTGAGACTGGAGTTAGAGATCAGCAATCGGATGCATTGGTCAATGATCTGAACAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTAGAGGGACAGAAGAAGAAGCTGGAAGAACATGAGCAGTTGTTAAGTTATCGAAGGGAACTGATTGGCAAATATAAGAGCTCCGTTGAAGAGCTTGGCAAGGGCGAGCCTTAG MDFSGGGNWSMIPNIPTLSNSSNLSNQESLYLQQQQFSLQQQQQQQQQQLSFHHQPQQFQPQIQPQQQFQQQQSSPQFQQLQPSPQIQPQQQLSTQFQQQMQPQHFPQQQQQQQQQQQQYHFQQQQQRLLQQQQQQQKQQQYHQHQSLASHFHLFHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSYRRELIGKYKSSVEELGKGEP Homology
BLAST of CmoCh01G000650 vs. ExPASy Swiss-Prot
Match: Q8RWA2 (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34 Identity = 131/236 (55.51%), Postives = 150/236 (63.56%), Query Frame = 0
BLAST of CmoCh01G000650 vs. ExPASy Swiss-Prot
Match: Q55F68 (Adenylate cyclase, terminal-differentiation specific OS=Dictyostelium discoideum OX=44689 GN=acrA PE=1 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 9.4e-05 Identity = 80/166 (48.19%), Postives = 95/166 (57.23%), Query Frame = 0
BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1GCY0 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111452828 PE=4 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 2.1e-108 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1K651 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111492669 PE=4 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 5.3e-104 Identity = 239/244 (97.95%), Postives = 239/244 (97.95%), Query Frame = 0
BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1FZC2 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111449284 PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 5.2e-91 Identity = 219/243 (90.12%), Postives = 225/243 (92.59%), Query Frame = 0
BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1D301 (Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=3673 GN=LOC111016860 PE=3 SV=1) HSP 1 Score: 317.8 bits (813), Expect = 4.0e-83 Identity = 208/246 (84.55%), Postives = 217/246 (88.21%), Query Frame = 0
BLAST of CmoCh01G000650 vs. ExPASy TrEMBL
Match: A0A6J1HX54 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111467667 PE=3 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 2.5e-77 Identity = 201/250 (80.40%), Postives = 205/250 (82.00%), Query Frame = 0
BLAST of CmoCh01G000650 vs. NCBI nr
Match: XP_022949500.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata]) HSP 1 Score: 401.7 bits (1031), Expect = 4.3e-108 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of CmoCh01G000650 vs. NCBI nr
Match: XP_023523773.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 393.3 bits (1009), Expect = 1.5e-105 Identity = 240/242 (99.17%), Postives = 240/242 (99.17%), Query Frame = 0
BLAST of CmoCh01G000650 vs. NCBI nr
Match: XP_022997827.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima]) HSP 1 Score: 387.1 bits (993), Expect = 1.1e-103 Identity = 239/244 (97.95%), Postives = 239/244 (97.95%), Query Frame = 0
BLAST of CmoCh01G000650 vs. NCBI nr
Match: KAG6606716.1 (hypothetical protein SDJN03_00058, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 387.1 bits (993), Expect = 1.1e-103 Identity = 239/243 (98.35%), Postives = 239/243 (98.35%), Query Frame = 0
BLAST of CmoCh01G000650 vs. NCBI nr
Match: KAG7036431.1 (Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 347.8 bits (891), Expect = 7.4e-92 Identity = 220/227 (96.92%), Postives = 220/227 (96.92%), Query Frame = 0
BLAST of CmoCh01G000650 vs. TAIR 10
Match: AT1G55080.1 (MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). ) HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35 Identity = 131/236 (55.51%), Postives = 150/236 (63.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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