CmoCh01G000160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G000160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein SA
Location	Cmo_Chr01: 53379 .. 56003 (+)
RNA-Seq Expression	CmoCh01G000160
Synteny	CmoCh01G000160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAACTCTTTGTTCCGGCCGAAAGAAAGAAACCTAGAGAAGCCCTAGCCCCTCCTGTTCTGTTCACAGGCCCCTTCTTTGTTGGTTCAACCTCCTTAAATTACTGCTATTCTGCAAACCCTAATACAACTCTCGATTCACAGAGATCCCGCCATGGCCACTGGAACAGCACCGCGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAGAACTGTAACTTCCAAATGGAGCGTTACGTTTTCAAGCGTCGAAACGATGGTATGTTGTGAATCACTTTACTTTTAGTTTTTCCAAGTTTGTTGAACTCCCCAAACCGCTTCCTAGATCCTCTTTGTTTTCAATATTGACTGTGATTTGTCTTGCACTGTAACATTGAGCACTAATGTCCCTGCCCAATGACCCTAAGTTTTGGAATGAAATTCTAAGGACTAGAGCGATCATAATTTCATGAGTCCGTATATATATCCGTGATCTCTTTGTTAAATTTGTGATAGTGATTACAATTCAGAGACGGTGTCTGACTATTGTTTGGTTTACCTCTTTAGTTATGACTGTATTTGCCAAGGACACATTGTTGAATAGTCCTATGGATTCTACATGTTTGGTGTGCGACAGCACGTGTGATGTCATTTTTAATTTGATCCCACAATGTTGGTTCATACGGTCAAAGATTTGAAGATTAATCCAATCTCTATTGTTTGAAGAATCAATTTTGTATTCGAGTCTGTTACTTTGAGGAATGTTAAGTTATTAAAGGCTTAAAAAGAGGTTTGATCTCTATATTTTCCATATGACGAACCTTTTTTTTTCTAATTCTCCTTTTTAGGAATCTACATTATTAACCTTGGTAAGACATGGGAGAAACTTCAGATGGCTGCCAGAGTTATTGTGGGTATTGAGAATCCACAGGACATCATTGTTCAGTCTGCAAGGCCTTATGGTCAGAGGGCCGTCTTGAAGTTTGCTCAACACACTGGGGCTCATGCAATAGCCGGGAGGCATACCCCTGGAACCTTCACTAACCAGCTTCAGACCTCTTTCAATGAACCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGGTGATTGAGCCTTTTTAAAGACCGATAAAAGTTTTCTGTTATTAGTTTTAAGTCAAAAGGATCGTCTTCTTTTTACCAATGCTAGATTCACTTTTGTTCCCTTCATTTTATTTATACCTGACTTGTTGCTGCTATTTGTGTTGTCTGGTTGGTTTCTCGTTTCCAGCCCATTAAGGAAGGTGCGCTTGGAAACATTCCTACAATTGCCTTTTGCGATACTGATTCACCAATGCGGTATGTTGATATTGGGATTCCAGCAAATAACAAGGGGAAACATAGCATTGGATGTCTTTTCTGGCTTTTGGCAAGGATGGTTCTGCAGATGCGTGGAACAATTCGTGCAGGGCATAAATGGGACGTGATGGTAAGATCAACATTATATTTTATATCGTAGCATTGTAAACCGTGTTCTGAACTGGAAGTTTGGGTTAACACTTTAGTGTTGGAAGTTTAATTGAAGGTTTGGATTGAATCAATGGATGTGTTTCTTCTGCAGGTGGATTTGTTTTTCTACCGAGAGCCTGAGGAGGCCAAGGAGAAAGAGGAAGAGGCTGTTGCGCCTCCAGATTATGGCATTGCCGATTATGGGGCTGCTCCACTTGTTGCCTCAGATCAATGGGCAGGACAAATTTCTGATGCTCAGTGGGGTGACCCTGATGTGGTTCCACCACCTGTAGCTGCTGCAGTTGTGCCACCTGTTCCGAGTGTTGAGTGGGCCCAAGAGCCAGGTTGAGCCCGAGTTTCCTTTTATGATTTAGTTGAATACCCGTGCTCATTGCCGTGTGTTTAGCTTTTAAAAGAAATCACGCTGGTTTATGTTTATAATTACCACCTGCCAGTTCCAGTTACCTTGTAGTCTGTCATTCGATAACTTGGTTGGTTGTCTGTTTGAGTCGTAGCAAAAAACAACGTTGTTTTTCCATGAACATACTTATTTTTTGACGCCTTCTTTTCTGGGTTTTTTTTTTCCTTGTGCAGTTGCTTTAGCATCAGACGGATGGGATGTTGCAGTACCGCCACCAGCACCTTCAGCCGAAGGTGCTGCGCCTCCGGCTGCCAGTTGGTAGGGTACACTAAGGGAACTATCGAGAATTCATTAATCGTTTTATGAGTTTGCTTGTTTATGTAGGGGTACCACCTTTTTTGGTTGCAAAATTGGCTTGCCTCTTTTCTGATAGTCCAGTTTTAGATTTTGATATTGAAATTTTGACATCAACTTTGGTATCTTGGTACAATTTTTTTGGGATATATGGAATTTACTCGTCTCAAGTTTAGTGGACATCCATATGAATAATGACTCTAAATAATGGGTGGTGGTAGATCCTCCATTGAACACAGTCATAGTGATACTCCTGTCCAATTGATAATATGTCAATTTAATTGACTACTCTTTGTTTCCTGTTGAAATTTTGTTTGATAAACTATGTAAAATTATAATATTTTGAGTTGGGAACTGAGAGTCGAGAAGTTCTAAGGGGTCTAGAGTGTAGAAGAAATAAAT

mRNA sequence

TTGCAACTCTTTGTTCCGGCCGAAAGAAAGAAACCTAGAGAAGCCCTAGCCCCTCCTGTTCTGTTCACAGGCCCCTTCTTTGTTGGTTCAACCTCCTTAAATTACTGCTATTCTGCAAACCCTAATACAACTCTCGATTCACAGAGATCCCGCCATGGCCACTGGAACAGCACCGCGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAGAACTGTAACTTCCAAATGGAGCGTTACGTTTTCAAGCGTCGAAACGATGGAATCTACATTATTAACCTTGGTAAGACATGGGAGAAACTTCAGATGGCTGCCAGAGTTATTGTGGGTATTGAGAATCCACAGGACATCATTGTTCAGTCTGCAAGGCCTTATGGTCAGAGGGCCGTCTTGAAGTTTGCTCAACACACTGGGGCTCATGCAATAGCCGGGAGGCATACCCCTGGAACCTTCACTAACCAGCTTCAGACCTCTTTCAATGAACCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGCCCATTAAGGAAGGTGCGCTTGGAAACATTCCTACAATTGCCTTTTGCGATACTGATTCACCAATGCGGTATGTTGATATTGGGATTCCAGCAAATAACAAGGGGAAACATAGCATTGGATGTCTTTTCTGGCTTTTGGCAAGGATGGTTCTGCAGATGCGTGGAACAATTCGTGCAGGGCATAAATGGGACGTGATGGTGGATTTGTTTTTCTACCGAGAGCCTGAGGAGGCCAAGGAGAAAGAGGAAGAGGCTGTTGCGCCTCCAGATTATGGCATTGCCGATTATGGGGCTGCTCCACTTGTTGCCTCAGATCAATGGGCAGGACAAATTTCTGATGCTCAGTGGGGTGACCCTGATGTGGTTCCACCACCTGTAGCTGCTGCAGTTGTGCCACCTGTTCCGAGTGTTGAGTGGGCCCAAGAGCCAGTTGCTTTAGCATCAGACGGATGGGATGTTGCAGTACCGCCACCAGCACCTTCAGCCGAAGGTGCTGCGCCTCCGGCTGCCAGTTGGTAGGGTACACTAAGGGAACTATCGAGAATTCATTAATCGTTTTATGAGTTTGCTTGTTTATGTAGGGGTACCACCTTTTTTGGTTGCAAAATTGGCTTGCCTCTTTTCTGATAGTCCAGTTTTAGATTTTGATATTGAAATTTTGACATCAACTTTGGTATCTTGGTACAATTTTTTTGGGATATATGGAATTTACTCGTCTCAAGTTTAGTGGACATCCATATGAATAATGACTCTAAATAATGGGTGGTGGTAGATCCTCCATTGAACACAGTCATAGTGATACTCCTGTCCAATTGATAATATGTCAATTTAATTGACTACTCTTTGTTTCCTGTTGAAATTTTGTTTGATAAACTATGTAAAATTATAATATTTTGAGTTGGGAACTGAGAGTCGAGAAGTTCTAAGGGGTCTAGAGTGTAGAAGAAATAAAT

Coding sequence (CDS)

ATGGCCACTGGAACAGCACCGCGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAGAACTGTAACTTCCAAATGGAGCGTTACGTTTTCAAGCGTCGAAACGATGGAATCTACATTATTAACCTTGGTAAGACATGGGAGAAACTTCAGATGGCTGCCAGAGTTATTGTGGGTATTGAGAATCCACAGGACATCATTGTTCAGTCTGCAAGGCCTTATGGTCAGAGGGCCGTCTTGAAGTTTGCTCAACACACTGGGGCTCATGCAATAGCCGGGAGGCATACCCCTGGAACCTTCACTAACCAGCTTCAGACCTCTTTCAATGAACCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGCCCATTAAGGAAGGTGCGCTTGGAAACATTCCTACAATTGCCTTTTGCGATACTGATTCACCAATGCGGTATGTTGATATTGGGATTCCAGCAAATAACAAGGGGAAACATAGCATTGGATGTCTTTTCTGGCTTTTGGCAAGGATGGTTCTGCAGATGCGTGGAACAATTCGTGCAGGGCATAAATGGGACGTGATGGTGGATTTGTTTTTCTACCGAGAGCCTGAGGAGGCCAAGGAGAAAGAGGAAGAGGCTGTTGCGCCTCCAGATTATGGCATTGCCGATTATGGGGCTGCTCCACTTGTTGCCTCAGATCAATGGGCAGGACAAATTTCTGATGCTCAGTGGGGTGACCCTGATGTGGTTCCACCACCTGTAGCTGCTGCAGTTGTGCCACCTGTTCCGAGTGTTGAGTGGGCCCAAGAGCCAGTTGCTTTAGCATCAGACGGATGGGATGTTGCAGTACCGCCACCAGCACCTTCAGCCGAAGGTGCTGCGCCTCCGGCTGCCAGTTGGTAG

Protein sequence

MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAAPPAASW

Homology

[Close]

BLAST of CmoCh01G000160 vs. ExPASy Swiss-Prot
Match: O22518 (40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 3.8e-128
Identity = 232/294 (78.91%), Postives = 244/294 (82.99%), Query Frame = 0


Query: 2   ATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQ 61
           A    PRQLSQKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTWEKLQ
Sbjct: 7   AAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQ 66

Query: 62  MAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEP 121
           +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+EP
Sbjct: 67  LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEP 126

Query: 122 RLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 181
           RLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA
Sbjct: 127 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 186

Query: 182 RMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQW 241
           RMVLQMRGTIR G KWDVMVDLFFYREPEEAK++EEE     DY I D+ A  + A  QW
Sbjct: 187 RMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAIAADGQW 246

Query: 242 AGQISDAQWGDPDVVPPPVAAAVVPPVPSVEW---AQEPVALASDGWDVAVPPP 293
            G I D  W   D VP P     +P VP V W   A+ P A   D W  AVPPP
Sbjct: 247 PGTI-DQSWS--DAVPQP-----IPAVPGVNWGAPAEAPAAAGGD-WGEAVPPP 291

[Close]

BLAST of CmoCh01G000160 vs. ExPASy Swiss-Prot
Match: O65751 (40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.9e-127
Identity = 237/309 (76.70%), Postives = 256/309 (82.85%), Query Frame = 0


Query: 1   MATGTAP-RQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT TAP RQL+QKEADIQMMLAA+VHLGTKNCNFQMERY+FKRRNDGIYIINLGKTW+K
Sbjct: 1   MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDK 60

Query: 61  LQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L +AAR+IV IEN QDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASD 240
           LARMVLQMRGTIR G KWDVMVDLFFYREPEEAK+ EE+ VA PDY IAD+  + + +  
Sbjct: 181 LARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNVSAIPSDG 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPP--APSAE 300
           QW   I D  W   D VP P     +P VP+V WA  P A+A D W  AVPPP   P+A 
Sbjct: 241 QWPAAI-DQPWN--DAVPQP-----IPAVPAVNWA-APEAVAGD-WGEAVPPPQQIPTAG 299

Query: 301 GAAPPAASW 307
             + PA  W
Sbjct: 301 IESVPATGW 299

[Close]

BLAST of CmoCh01G000160 vs. ExPASy Swiss-Prot
Match: A5BUU4 (40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 7.2e-127
Identity = 242/316 (76.58%), Postives = 253/316 (80.06%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT T  R LSQKE DIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATPT--RALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIV IENP+DIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+E
Sbjct: 61  QLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKE-EEAVAPPDYGIADYGAAPL--VA 240
           ARMVLQMR TI  GHKWDVMVDLFFYREPEE KE+E +E VA PDYGI DY A  L  + 
Sbjct: 181 ARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLG 240

Query: 241 SDQWAGQISDA-QWGDPDVVPPPVAAAVVPPVPSVEWAQ-----EPVALASDGWDVAVPP 300
              W   I+DA QWG    VP   A A +P VP   W         V +A+DGWD A  P
Sbjct: 241 GGDWGAPITDAPQWGAD--VP---AVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAP 300

Query: 301 PA----PSAEGAAPPA 304
           P     P  EG  PPA
Sbjct: 301 PVAVPPPVVEGVPPPA 309

[Close]

BLAST of CmoCh01G000160 vs. ExPASy Swiss-Prot
Match: O80377 (40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 7.9e-126
Identity = 234/303 (77.23%), Postives = 251/303 (82.84%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MA+G   R+LS  EADIQMM AAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MASGA--RELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
            +AARVIV IENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+E
Sbjct: 61  MLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240
           ARMVLQMRG I  GHKW+VMVDLFFYREPEE K++EEE +   DY +ADY AAP+  +DQ
Sbjct: 181 ARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDY-VADYAAAPIGGADQ 240

Query: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300
           W   I DAQWG  DVV P  +A     VP+  W  +   +A DGWD A  PP P A G  
Sbjct: 241 W-NAIPDAQWGG-DVVQPANSA-----VPAGTWT-DAGPIAGDGWDAAAAPPVPGAVGLD 292

Query: 301 PPA 304
            PA
Sbjct: 301 VPA 292

[Close]

BLAST of CmoCh01G000160 vs. ExPASy Swiss-Prot
Match: Q08682 (40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3)

HSP 1 Score: 432.2 bits (1110), Expect = 5.0e-120
Identity = 222/304 (73.03%), Postives = 241/304 (79.28%), Query Frame = 0


Query: 9   QLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIV 68
           QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWEKLQMAARVIV
Sbjct: 11  QLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIV 70

Query: 69  GIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTD 128
            IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF+EPRLLILTD
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 130

Query: 129 PRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 188
           PRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMR
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190

Query: 189 GTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAP-----LVASDQW-A 248
           GTI AG KWDVMVDLFFYREPEE K ++E+   P     A+YGA P     +V  DQW  
Sbjct: 191 GTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ----AEYGALPAPEYGMVGGDQWTT 250

Query: 249 GQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAAPP 307
            QI DA W  P     P++AA      +  W+    A A  GW+ A PP       +  P
Sbjct: 251 AQIPDAAW--PGEGQAPISAAPA----AASWSDSAAAPADGGWEAAAPP-------SGAP 297

[Close]

BLAST of CmoCh01G000160 vs. ExPASy TrEMBL
Match: A0A6J1GCP6 (40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111452769 PE=3 SV=1)

HSP 1 Score: 625.2 bits (1611), Expect = 1.5e-175
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240
           ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ
Sbjct: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240

Query: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300
           WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA
Sbjct: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300

Query: 301 PPAASW 307
           PPAASW
Sbjct: 301 PPAASW 306

[Close]

BLAST of CmoCh01G000160 vs. ExPASy TrEMBL
Match: A0A6J1K9M4 (40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111492923 PE=3 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 5.2e-173
Identity = 302/306 (98.69%), Postives = 303/306 (99.02%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVGIENPQ+IIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVGIENPQNIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240
           ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ
Sbjct: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240

Query: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300
           WAGQISDAQWGDPDVVPPPVAAAVVPPV SVEWAQEPVALASDGWDVAVPPPAP  EGAA
Sbjct: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVSSVEWAQEPVALASDGWDVAVPPPAPPTEGAA 300

Query: 301 PPAASW 307
           PPAASW
Sbjct: 301 PPAASW 306

[Close]

BLAST of CmoCh01G000160 vs. ExPASy TrEMBL
Match: A0A1S3CDH5 (40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103499190 PE=3 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 4.2e-162
Identity = 287/307 (93.49%), Postives = 294/307 (95.77%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT TAPRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATTTAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEK EEEAVAPPDYGIADYG APLVASD
Sbjct: 181 ARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVASD 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGA 300
           QWAGQISDAQWG PD++P P AA VVPPV +VEW QEPVALASDGWD AVPPPAP+AEG 
Sbjct: 241 QWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPVALASDGWDAAVPPPAPAAEGG 300

Query: 301 APPAASW 307
           A PAASW
Sbjct: 301 A-PAASW 306

[Close]

BLAST of CmoCh01G000160 vs. ExPASy TrEMBL
Match: A0A0A0L946 (40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_3G646520 PE=3 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 3.3e-159
Identity = 286/309 (92.56%), Postives = 293/309 (94.82%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT TAPRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEK EEEAVAPPDYGIADYG APLVASD
Sbjct: 181 ARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVASD 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAA-AVVPPVPSVEWAQEP-VALASDGWDVAVPPPAPSAE 300
           QWAGQISDAQWG PD++P P AA  VVPPV +VEW QEP VA+ASDGWD A PPPAPSAE
Sbjct: 241 QWAGQISDAQWGAPDLIPAPDAAPVVVPPVSNVEWTQEPVVAIASDGWDAAAPPPAPSAE 300

Query: 301 GAAPPAASW 307
           G A PAASW
Sbjct: 301 GGA-PAASW 308

[Close]

BLAST of CmoCh01G000160 vs. ExPASy TrEMBL
Match: A0A6J1IX68 (40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111479974 PE=3 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.8e-158
Identity = 282/308 (91.56%), Postives = 289/308 (93.83%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT T PRQLSQKEADIQMMLA+EVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATATPPRQLSQKEADIQMMLASEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEE--AVAPPDYGIADYGAAPLVAS 240
           ARMVLQMRGTIRAG KWDVMVDLFFYREPEEAKEKEEE    AP DYGIAD+GAAPLV S
Sbjct: 181 ARMVLQMRGTIRAGLKWDVMVDLFFYREPEEAKEKEEEEAIAAPLDYGIADFGAAPLVTS 240

Query: 241 DQWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEG 300
           DQWAGQISDAQWG PDVVPPP AA V PPV +VEW+QEPVA +SDGW  AVPPPAPS EG
Sbjct: 241 DQWAGQISDAQWGAPDVVPPPDAALVPPPVSNVEWSQEPVA-SSDGWQAAVPPPAPSVEG 300

Query: 301 AAPPAASW 307
            APPAASW
Sbjct: 301 GAPPAASW 307

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: XP_022949415.1 (40S ribosomal protein SA-like [Cucurbita moschata] >XP_023525119.1 40S ribosomal protein SA-like [Cucurbita pepo subsp. pepo] >KAG7036393.1 40S ribosomal protein SA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 625.2 bits (1611), Expect = 3.0e-175
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240
           ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ
Sbjct: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240

Query: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300
           WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA
Sbjct: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300

Query: 301 PPAASW 307
           PPAASW
Sbjct: 301 PPAASW 306

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: XP_022998206.1 (40S ribosomal protein SA-like [Cucurbita maxima])

HSP 1 Score: 616.7 bits (1589), Expect = 1.1e-172
Identity = 302/306 (98.69%), Postives = 303/306 (99.02%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVGIENPQ+IIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVGIENPQNIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240
           ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ
Sbjct: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240

Query: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300
           WAGQISDAQWGDPDVVPPPVAAAVVPPV SVEWAQEPVALASDGWDVAVPPPAP  EGAA
Sbjct: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVSSVEWAQEPVALASDGWDVAVPPPAPPTEGAA 300

Query: 301 PPAASW 307
           PPAASW
Sbjct: 301 PPAASW 306

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: KAG6606673.1 (40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 611.3 bits (1575), Expect = 4.6e-171
Identity = 299/301 (99.34%), Postives = 299/301 (99.34%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240
           ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ
Sbjct: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAPLVASDQ 240

Query: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAA 300
           WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEG  
Sbjct: 241 WAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGVP 300

Query: 301 P 302
           P
Sbjct: 301 P 301

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: XP_008460336.2 (PREDICTED: 40S ribosomal protein SA-like [Cucumis melo])

HSP 1 Score: 580.5 bits (1495), Expect = 8.6e-162
Identity = 287/307 (93.49%), Postives = 294/307 (95.77%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT TAPRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATTTAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEK EEEAVAPPDYGIADYG APLVASD
Sbjct: 181 ARMVLQMRGTIRAGHQWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGAPLVASD 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGA 300
           QWAGQISDAQWG PD++P P AA VVPPV +VEW QEPVALASDGWD AVPPPAP+AEG 
Sbjct: 241 QWAGQISDAQWGAPDLIPAPDAAVVVPPVSNVEWTQEPVALASDGWDAAVPPPAPAAEGG 300

Query: 301 APPAASW 307
           A PAASW
Sbjct: 301 A-PAASW 306

[Close]

BLAST of CmoCh01G000160 vs. NCBI nr
Match: XP_038903491.1 (40S ribosomal protein SA-like [Benincasa hispida])

HSP 1 Score: 580.1 bits (1494), Expect = 1.1e-161
Identity = 286/307 (93.16%), Postives = 292/307 (95.11%), Query Frame = 0


Query: 1   MATGTAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT TAPRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKEK-EEEAVAPPDYGIADYGAAPLVASD 240
           ARMVLQMRGTIRAGH+WDVMVDLFFYREPEEAKEK EEEAVAPPDYGIADYG A LV+SD
Sbjct: 181 ARMVLQMRGTIRAGHEWDVMVDLFFYREPEEAKEKEEEEAVAPPDYGIADYGGASLVSSD 240

Query: 241 QWAGQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGA 300
           QWAGQISDAQWG PDVVP P    + PPVP+VEW QEPVALASDGWD AVPPPAPSAEG 
Sbjct: 241 QWAGQISDAQWGAPDVVPAP-DGVIAPPVPNVEWTQEPVALASDGWDAAVPPPAPSAEGG 300

Query: 301 APPAASW 307
           APPAASW
Sbjct: 301 APPAASW 306

[Close]

BLAST of CmoCh01G000160 vs. TAIR 10
Match: AT1G72370.1 (40s ribosomal protein SA )

HSP 1 Score: 432.2 bits (1110), Expect = 3.5e-121
Identity = 222/304 (73.03%), Postives = 241/304 (79.28%), Query Frame = 0


Query: 9   QLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIV 68
           QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWEKLQMAARVIV
Sbjct: 11  QLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIV 70

Query: 69  GIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTD 128
            IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF+EPRLLILTD
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 130

Query: 129 PRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 188
           PRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMR
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190

Query: 189 GTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAP-----LVASDQW-A 248
           GTI AG KWDVMVDLFFYREPEE K ++E+   P     A+YGA P     +V  DQW  
Sbjct: 191 GTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ----AEYGALPAPEYGMVGGDQWTT 250

Query: 249 GQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAAPP 307
            QI DA W  P     P++AA      +  W+    A A  GW+ A PP       +  P
Sbjct: 251 AQIPDAAW--PGEGQAPISAAPA----AASWSDSAAAPADGGWEAAAPP-------SGAP 297

[Close]

BLAST of CmoCh01G000160 vs. TAIR 10
Match: AT1G72370.2 (40s ribosomal protein SA )

HSP 1 Score: 427.6 bits (1098), Expect = 8.7e-120
Identity = 221/304 (72.70%), Postives = 240/304 (78.95%), Query Frame = 0


Query: 9   QLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIV 68
           QLSQKEAD++MM AAEVHLGTKNCN+QMERYVFKRRNDGIYI NLGKTWEKLQMAARVIV
Sbjct: 11  QLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIV 70

Query: 69  GIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTD 128
            IENPQDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF+EPRLLILTD
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 130

Query: 129 PRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 188
           PRTDHQPIKEGALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMR
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190

Query: 189 GTIRAGHKWDVMVDLFFYREPEEAKEKEEEAVAPPDYGIADYGAAP-----LVASDQW-A 248
           GTI AG KWDVMVDLFFYREPEE K ++E+   P     A+YGA P     +V  DQW  
Sbjct: 191 GTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ----AEYGALPAPEYGMVGGDQWTT 250

Query: 249 GQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWDVAVPPPAPSAEGAAPP 307
            QI DA W  P     P++AA      +  W+      A  GW+ A PP       +  P
Sbjct: 251 AQIPDAAW--PGEGQAPISAAPA----AASWSDS----ADGGWEAAAPP-------SGAP 293

[Close]

BLAST of CmoCh01G000160 vs. TAIR 10
Match: AT3G04770.2 (40s ribosomal protein SA B )

HSP 1 Score: 419.1 bits (1076), Expect = 3.1e-117
Identity = 215/284 (75.70%), Postives = 236/284 (83.10%), Query Frame = 0


Query: 5   TAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAA 64
           TA RQ+S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+KLQMAA
Sbjct: 8   TAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAA 67

Query: 65  RVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLL 124
           RVIV IENP+DIIVQSARPYGQRAVLKFAQ+TG +AIAGRHTPGTFTNQ+QTSF+EPRLL
Sbjct: 68  RVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLL 127

Query: 125 ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMV 184
           ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMV
Sbjct: 128 ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMV 187

Query: 185 LQMRGTIRAGHKWDVMVDLFFYREPEEAK-EKEEEAVAPPDYGIADYGAAPLVASDQW-A 244
           LQMRGTI A  KWDVMVDLFFYREPEEAK E +EEA    DYG        +V  DQW  
Sbjct: 188 LQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAEVQADYG--------MVGGDQWTT 247

Query: 245 GQISDAQWGDPDVVPPPVAAAVVPPVPSVEWAQEPVALASDGWD 287
            QISDA W   +V  P  AA  V    +  W  E  ++ + GW+
Sbjct: 248 AQISDAAWSG-EVEQPISAAPAVGVTVAAGW--EAASVPAAGWE 280

[Close]

BLAST of CmoCh01G000160 vs. TAIR 10
Match: AT3G04770.1 (40s ribosomal protein SA B )

HSP 1 Score: 373.2 bits (957), Expect = 1.9e-103
Identity = 177/198 (89.39%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 5   TAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQMAA 64
           TA RQ+S+KEADIQMML+A+VHLGTKNCN+QMERYVFKRR+DGIYIINLGKTW+KLQMAA
Sbjct: 8   TAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAA 67

Query: 65  RVIVGIENPQDIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLL 124
           RVIV IENP+DIIVQSARPYGQRAVLKFAQ+TG +AIAGRHTPGTFTNQ+QTSF+EPRLL
Sbjct: 68  RVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLL 127

Query: 125 ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMV 184
           ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMV
Sbjct: 128 ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMV 187

Query: 185 LQMRGTIRAGHKWDVMVD 203
           LQMRGTI A  KWDVMV+
Sbjct: 188 LQMRGTILAAQKWDVMVN 205

The following BLAST results are available for this feature:

BLAST of CmoCh01G000160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22518	3.8e-128	78.91	40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1	[more]
O65751	1.9e-127	76.70	40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1	[more]
A5BUU4	7.2e-127	76.58	40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV...	[more]
O80377	7.9e-126	77.23	40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1	[more]
Q08682	5.0e-120	73.03	40S ribosomal protein Sa-1 OS=Arabidopsis thaliana OX=3702 GN=RPSaA PE=1 SV=3	[more]

BLAST of CmoCh01G000160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCP6	1.5e-175	100.00	40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111452769 PE=3 SV=1	[more]
A0A6J1K9M4	5.2e-173	98.69	40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111492923 PE=3 SV=1	[more]
A0A1S3CDH5	4.2e-162	93.49	40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103499190 PE=3 SV=1	[more]
A0A0A0L946	3.3e-159	92.56	40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_3G646520 PE=3 SV=1	[more]
A0A6J1IX68	4.8e-158	91.56	40S ribosomal protein SA OS=Cucurbita maxima OX=3661 GN=LOC111479974 PE=3 SV=1	[more]

BLAST of CmoCh01G000160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949415.1	3.0e-175	100.00	40S ribosomal protein SA-like [Cucurbita moschata] >XP_023525119.1 40S ribosomal...	[more]
XP_022998206.1	1.1e-172	98.69	40S ribosomal protein SA-like [Cucurbita maxima]	[more]
KAG6606673.1	4.6e-171	99.34	40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008460336.2	8.6e-162	93.49	PREDICTED: 40S ribosomal protein SA-like [Cucumis melo]	[more]
XP_038903491.1	1.1e-161	93.16	40S ribosomal protein SA-like [Benincasa hispida]	[more]

BLAST of CmoCh01G000160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72370.1	3.5e-121	73.03	40s ribosomal protein SA	[more]
AT1G72370.2	8.7e-120	72.70	40s ribosomal protein SA	[more]
AT3G04770.2	3.1e-117	75.70	40s ribosomal protein SA B	[more]
AT3G04770.1	1.9e-103	89.39	40s ribosomal protein SA B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 159..173 score: 53.64 coord: 47..56 score: 64.92 coord: 138..149 score: 46.03 coord: 96..113 score: 47.01 coord: 121..138 score: 44.62 coord: 17..35 score: 35.79
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 20..113 e-value: 3.9E-14 score: 52.4 coord: 119..184 e-value: 6.0E-11 score: 42.0
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 20..186 e-value: 1.84048E-72 score: 219.761
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	TIGRFAM	TIGR01012	TIGR01012	coord: 12..208 e-value: 5.7E-96 score: 317.6
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 9..306
None	No IPR available	GENE3D	3.40.50.10490		coord: 16..221 e-value: 2.8E-103 score: 345.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..306
None	No IPR available	PANTHER	PTHR11489:SF25	40S RIBOSOMAL PROTEIN SA	coord: 9..306
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 121..145
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 17..28
IPR027498	Ribosomal protein S2, eukaryotic	HAMAP	MF_03015	Ribosomal_S2_euk	coord: 4..276 score: 50.215267
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 12..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G000160.1	CmoCh01G000160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome