CmoCh00G000970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh00G000970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	defensin-like protein 2
Location	Cmo_Chr00: 17590771 .. 17591127 (-)
RNA-Seq Expression	CmoCh00G000970
Synteny	CmoCh00G000970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAAGAAAAGAATGGCGGGACAAAGCTTGAGAAATCTCAAAATTGTGGTGTTCATCTTCCTAGCCCTTACTTCTGGTACTTGATCCTTCCTGCTTCTCCATATTGATTTAGATTGACAGATAGTATTGAAAAGTAGGTTTTTGTTTGTATGAATAAGTTCGTGTTACTGTTGCAGGATGGATGGTGGCTCAGACGGAGGGGCGGACATGCTATAAACACAGCGATGCGTTTATAGGACCGTGCATTGAAGAAACATGTGCTGAACTTTGCATTTCTTTTGAGAAGTGGGATGGCGGATTTTGCTCGGGTGATAAATGCACTTGTTCGAAGCAATGTGCTGAGTCCACGCTTTAA

mRNA sequence

AAGAGAAGAAAAGAATGGCGGGACAAAGCTTGAGAAATCTCAAAATTGTGGTGTTCATCTTCCTAGCCCTTACTTCTGGATGGATGGTGGCTCAGACGGAGGGGCGGACATGCTATAAACACAGCGATGCGTTTATAGGACCGTGCATTGAAGAAACATGTGCTGAACTTTGCATTTCTTTTGAGAAGTGGGATGGCGGATTTTGCTCGGGTGATAAATGCACTTGTTCGAAGCAATGTGCTGAGTCCACGCTTTAA

Coding sequence (CDS)

ATGGCGGGACAAAGCTTGAGAAATCTCAAAATTGTGGTGTTCATCTTCCTAGCCCTTACTTCTGGATGGATGGTGGCTCAGACGGAGGGGCGGACATGCTATAAACACAGCGATGCGTTTATAGGACCGTGCATTGAAGAAACATGTGCTGAACTTTGCATTTCTTTTGAGAAGTGGGATGGCGGATTTTGCTCGGGTGATAAATGCACTTGTTCGAAGCAATGTGCTGAGTCCACGCTTTAA

Protein sequence

MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWDGGFCSGDKCTCSKQCAESTL

Homology

[Close]

BLAST of CmoCh00G000970 vs. ExPASy Swiss-Prot
Match: B3F051 (Defensin Lc-def OS=Lens culinaris subsp. culinaris OX=362247 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-04
Identity = 24/64 (37.50%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 14 FIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEE-TCAELCISFEKWDGGFCSGD-KCTC 73
          F+F+ L     +A TE +TC   SD+F GPCI +  C + C   E    G C  D +C C
Sbjct: 11 FLFIVLFVAQEIAVTEAKTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWC 70

Query: 74 SKQC 76
          ++ C
Sbjct: 71 TRNC 74

[Close]

BLAST of CmoCh00G000970 vs. ExPASy TrEMBL
Match: A0A6J1EZ71 (defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440132 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.8e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
          GGFCSGDKCTCSKQCAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of CmoCh00G000970 vs. ExPASy TrEMBL
Match: A0A6J1F464 (defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440135 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.2e-40
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCI+ETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIKETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
          GGFCSGDKCTCSKQCAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of CmoCh00G000970 vs. ExPASy TrEMBL
Match: A0A6J1HDV2 (defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111461967 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.2e-40
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          M GQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MGGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
          GGFCSGDKCTCSKQCAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of CmoCh00G000970 vs. ExPASy TrEMBL
Match: A0A6J1F4H8 (defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440651 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.8e-40
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAEST 80
          GGFCSGDKCTCSKQCAEST
Sbjct: 61 GGFCSGDKCTCSKQCAEST 79

[Close]

BLAST of CmoCh00G000970 vs. ExPASy TrEMBL
Match: A0A6J1IBG0 (defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473130 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.3e-37
Identity = 74/80 (92.50%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMV QTEGRTCYKHSDAFIGPCI  TCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVVQTEGRTCYKHSDAFIGPCIAATCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
           GFCSGDKCTC+KQCAES L
Sbjct: 61 DGFCSGDKCTCTKQCAESML 80

[Close]

BLAST of CmoCh00G000970 vs. NCBI nr
Match: XP_022933232.1 (defensin-like protein 2 [Cucurbita moschata] >XP_022933235.1 defensin-like protein 2 [Cucurbita moschata] >XP_022933353.1 defensin-like protein 2 [Cucurbita moschata] >KAG6590360.1 Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031896.1 Defensin-like protein 8 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6590362.1 Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590366.1 Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590367.1 Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.5 bits (441), Expect = 3.7e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
          GGFCSGDKCTCSKQCAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of CmoCh00G000970 vs. NCBI nr
Match: KAG6590363.1 (Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
          GGFCSGDKCTCSK+CAESTL
Sbjct: 61 GGFCSGDKCTCSKKCAESTL 80

[Close]

BLAST of CmoCh00G000970 vs. NCBI nr
Match: KAG6590359.1 (Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          M GQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MTGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
          GGFCSGDKCTCSKQCAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of CmoCh00G000970 vs. NCBI nr
Match: XP_022961379.1 (defensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          M GQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MGGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
          GGFCSGDKCTCSKQCAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of CmoCh00G000970 vs. NCBI nr
Match: XP_022933233.1 (defensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCI+ETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIKETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKQCAESTL 81
          GGFCSGDKCTCSKQCAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

The following BLAST results are available for this feature:

BLAST of CmoCh00G000970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3F051	2.6e-04	37.50	Defensin Lc-def OS=Lens culinaris subsp. culinaris OX=362247 PE=1 SV=1	[more]

BLAST of CmoCh00G000970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZ71	1.8e-40	100.00	defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440132 PE=4 SV=1	[more]
A0A6J1F464	5.2e-40	98.75	defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440135 PE=4 SV=1	[more]
A0A6J1HDV2	5.2e-40	98.75	defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111461967 PE=4 SV=1	[more]
A0A6J1F4H8	6.8e-40	100.00	defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440651 PE=4 SV=1	[more]
A0A6J1IBG0	9.3e-37	92.50	defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473130 PE=4 SV=1	[more]

BLAST of CmoCh00G000970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933232.1	3.7e-40	100.00	defensin-like protein 2 [Cucurbita moschata] >XP_022933235.1 defensin-like prote...	[more]
KAG6590363.1	1.1e-39	98.75	Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6590359.1	1.1e-39	98.75	Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022961379.1	1.1e-39	98.75	defensin-like protein 2 [Cucurbita moschata]	[more]
XP_022933233.1	1.1e-39	98.75	defensin-like protein 2 [Cucurbita moschata]	[more]

BLAST of CmoCh00G000970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003614	Knottin, scorpion toxin-like	SMART	SM00505	gth_4	coord: 32..75 e-value: 0.0018 score: 27.5
IPR036574	Knottin, scorpion toxin-like superfamily	GENE3D	3.30.30.10		coord: 25..80 e-value: 6.4E-10 score: 40.7
IPR036574	Knottin, scorpion toxin-like superfamily	SUPERFAMILY	57095	Scorpion toxin-like	coord: 31..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G000970.1	CmoCh00G000970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
biological_process	GO:0006952	defense response
cellular_component	GO:0016021	integral component of membrane