CmoCh00G000800 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh00G000800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr00: 16352224 .. 16353995 (+)
RNA-Seq Expression	CmoCh00G000800
Synteny	CmoCh00G000800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGGGGTCCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCGATGCTTCCGACTTTGCTCTAGGTGGGGTCCTTATTCCAGAAGGCCACCCCATCGCTTATGAAAGTCGAAAGCTCAACGATGCCGAACGAAGATACACTGTCTCCNGGCCGAATTCGACTTCAAGTTCGAACACAAAGCAGGAAAGAGTAATCAAGCAGCCGACGCGCTGAGTCGGAAGGGCAAACATGCGGCCCTGTGCATGTTATCCCATATTCATTCAAGTAAGATCGATGGATTGATGCGCGACATCATCAAGGAACATTTACACAAAGACCCATCGGCCAAAGCTGTTGTCGAACTAGCTAAGGCTGGAAAGACACGACAGTTTTGGGTTGAGGGGGACCTCCTGATAACCAAAGGAAACAGATTGTACGTCCCAAGAACGGGAGAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGCTGGACACCCTGGGTGGCAAAGAACATACGCCCTAATAAAGAAGGGGTACTTCTGGCAAAATATGCGAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGCCAACAGGATAAGGTCGAGAAAGCCAAAGTCTCTGGACTCTTGGAACCTCTACCTGTGCCAACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGACGCCATCTTGGTCATTGTAGACCGATTCTCCAAATATGCGACATTCATCCCCACTCCCAAATTATGCTCGGCGGAACTCACAGCCCAACTGTTTTTCAAACACGTTGTAAAGCTATCGGGCATTCCGTCGAGCATCATCAGTGATAGGGATGGCAGATTCATTGGGACATTCTGGACTGAGTTATTCGCTTTCTTGGGAACAACCTTGAACATCTCCTCGAGTTATCACCCTCAAACCGATGGACAGACAGAACGGTTCAATTGCTTGCTCGAAGAATACTTACGTCACTTCATCGACGCTCGCCAAAAGAACTGGATACAATTGTTAGATGTCGCCCAATTTTGCTTCAATTGTCAAACAAGCTCGTCTACAGGGAAGAGTCCCTTCGAAATTGTAAGTGGACGACAACCGGCCTTACCCCATATTATTGATCATCCTTATGCAGGAAAAAACCCTCAAGCTCACAACTTTACAAGAGAATGGAAGCAGACGACAAATATAGCCCGGGCATATTTAGAGAAGGCTTCCAAGCATATGAAGAAATGGGCGGACAAGAAGCGTCGCCCCCTTCAATTCCGTGCAGGAGATCAAGTCCTTATCAAGCTGAGACCAGAACAAATCAGATTTCGTAGCCGAAAGGACCAGAGACTAGTTCGTAAATATGAAGGCCCGGTTGAAGTCCTTAAAAAGATCGAGGCTACCTCCTACCGAGTTGCACTACCCGCATGGATGAAAATCCACCCCGTCATTCATGTGAGCAACTTGAAGCCCTATCACCCTGATCCAGACGACGACCAACGAAATGCAACCACAAGACTGAACATCGATCTGCAGCAAAAAGAAACAAAGGAAGTGGAAGAGATCCTAGCCGACAGGGTTAGGAAGATAGGAAGACCTGTACGGACGATTCGTGAATTCCTTATCAAATGGAAGAATCTCCCTAAAGAGGAAACAAGCTGGGAACGCGCCGAAGATCTGAACTTCGCCGCCACCCACATCGCAAGGTATGAAAGTCGTTGGTTGACAGGGACGTCAACCAATTAG

mRNA sequence

ATGACGAGGGGTCCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCGATGCTTCCGACTTTGCTCTAGGAAAGAGTAATCAAGCAGCCGACGCGCTGAGTCGGAAGGGCAAACATGCGGCCCTGTGCATGTTATCCCATATTCATTCAAGTAAGATCGATGGATTGATGCGCGACATCATCAAGGAACATTTACACAAAGACCCATCGGCCAAAGCTGTTGTCGAACTAGCTAAGGCTGGAAAGACACGACAGTTTTGGGTTGAGGGGGACCTCCTGATAACCAAAGGAAACAGATTGTACGTCCCAAGAACGGGAGAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGCTGGACACCCTGGGTGGCAAAGAACATACGCCCTAATAAAGAAGGGGTACTTCTGGCAAAATATGCGAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGCCAACAGGATAAGGTCGAGAAAGCCAAAGTCTCTGGACTCTTGGAACCTCTACCTGTGCCAACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGACGCCATCTTGGTCATTGTAGACCGATTCTCCAAATATGCGACATTCATCCCCACTCCCAAATTATGCTCGGCGGAACTCACAGCCCAACTGTTTTTCAAACACGTTGTAAAGCTATCGGGCATTCCGTCGAGCATCATCAGTGATAGGGATGGCAGATTCATTGGGACATTCTGGACTGAGTTATTCGCTTTCTTGGGAACAACCTTGAACATCTCCTCGAGTTATCACCCTCAAACCGATGGACAGACAGAACGGTTCAATTGCTTGCTCGAAGAATACTTACGTCACTTCATCGACGCTCGCCAAAAGAACTGGATACAATTGTTAGATGTCGCCCAATTTTGCTTCAATTGTCAAACAAGCTCGTCTACAGGGAAGAGTCCCTTCGAAATTGTAAGTGGACGACAACCGGCCTTACCCCATATTATTGATCATCCTTATGCAGGAAAAAACCCTCAAGCTCACAACTTTACAAGAGAATGGAAGCAGACGACAAATATAGCCCGGGCATATTTAGAGAAGGCTTCCAAGCATATGAAGAAATGGGCGGACAAGAAGCGTCGCCCCCTTCAATTCCGTGCAGGAGATCAAGTCCTTATCAAGCTGAGACCAGAACAAATCAGATTTCGTAGCCGAAAGGACCAGAGACTAGTTCGTAAATATGAAGGCCCGGTTGAAGTCCTTAAAAAGATCGAGGCTACCTCCTACCGAGTTGCACTACCCGCATGGATGAAAATCCACCCCGTCATTCATGTGAGCAACTTGAAGCCCTATCACCCTGATCCAGACGACGACCAACGAAATGCAACCACAAGACTGAACATCGATCTGCAGCAAAAAGAAACAAAGGAAGTGGAAGAGATCCTAGCCGACAGGGTTAGGAAGATAGGAAGACCTGTACGGACGATTCGTGAATTCCTTATCAAATGGAAGAATCTCCCTAAAGAGGAAACAAGCTGGGAACGCGCCGAAGATCTGAACTTCGCCGCCACCCACATCGCAAGGTATGAAAGTCGTTGGTTGACAGGGACGTCAACCAATTAG

Coding sequence (CDS)

ATGACGAGGGGTCCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCGATGCTTCCGACTTTGCTCTAGGAAAGAGTAATCAAGCAGCCGACGCGCTGAGTCGGAAGGGCAAACATGCGGCCCTGTGCATGTTATCCCATATTCATTCAAGTAAGATCGATGGATTGATGCGCGACATCATCAAGGAACATTTACACAAAGACCCATCGGCCAAAGCTGTTGTCGAACTAGCTAAGGCTGGAAAGACACGACAGTTTTGGGTTGAGGGGGACCTCCTGATAACCAAAGGAAACAGATTGTACGTCCCAAGAACGGGAGAACTGAGGAAGAAGCTCATTCAGGAATGTCATGATACCTTATGGGCTGGACACCCTGGGTGGCAAAGAACATACGCCCTAATAAAGAAGGGGTACTTCTGGCAAAATATGCGAGACGACATCATGCAATACACCAAGACGTGCCTCATCTGCCAACAGGATAAGGTCGAGAAAGCCAAAGTCTCTGGACTCTTGGAACCTCTACCTGTGCCAACAAGACCCTGGGAAAGTGTATCTCTGGACTTCATAACACACCTCCCAAAAGTCGGGGAATATGACGCCATCTTGGTCATTGTAGACCGATTCTCCAAATATGCGACATTCATCCCCACTCCCAAATTATGCTCGGCGGAACTCACAGCCCAACTGTTTTTCAAACACGTTGTAAAGCTATCGGGCATTCCGTCGAGCATCATCAGTGATAGGGATGGCAGATTCATTGGGACATTCTGGACTGAGTTATTCGCTTTCTTGGGAACAACCTTGAACATCTCCTCGAGTTATCACCCTCAAACCGATGGACAGACAGAACGGTTCAATTGCTTGCTCGAAGAATACTTACGTCACTTCATCGACGCTCGCCAAAAGAACTGGATACAATTGTTAGATGTCGCCCAATTTTGCTTCAATTGTCAAACAAGCTCGTCTACAGGGAAGAGTCCCTTCGAAATTGTAAGTGGACGACAACCGGCCTTACCCCATATTATTGATCATCCTTATGCAGGAAAAAACCCTCAAGCTCACAACTTTACAAGAGAATGGAAGCAGACGACAAATATAGCCCGGGCATATTTAGAGAAGGCTTCCAAGCATATGAAGAAATGGGCGGACAAGAAGCGTCGCCCCCTTCAATTCCGTGCAGGAGATCAAGTCCTTATCAAGCTGAGACCAGAACAAATCAGATTTCGTAGCCGAAAGGACCAGAGACTAGTTCGTAAATATGAAGGCCCGGTTGAAGTCCTTAAAAAGATCGAGGCTACCTCCTACCGAGTTGCACTACCCGCATGGATGAAAATCCACCCCGTCATTCATGTGAGCAACTTGAAGCCCTATCACCCTGATCCAGACGACGACCAACGAAATGCAACCACAAGACTGAACATCGATCTGCAGCAAAAAGAAACAAAGGAAGTGGAAGAGATCCTAGCCGACAGGGTTAGGAAGATAGGAAGACCTGTACGGACGATTCGTGAATTCCTTATCAAATGGAAGAATCTCCCTAAAGAGGAAACAAGCTGGGAACGCGCCGAAGATCTGAACTTCGCCGCCACCCACATCGCAAGGTATGAAAGTCGTTGGTTGACAGGGACGTCAACCAATTAG

Protein sequence

MTRGPVLGLVDVTKPFEVETDASDFALGKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSSTGKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWADKKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWMKIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIREFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTSTN

Homology

[Close]

BLAST of CmoCh00G000800 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 8.8e-51
Identity = 153/492 (31.10%), Postives = 232/492 (47.15%), Query Frame = 0


Query: 24   DFALGKSNQAADALSRK--------------------GKHAALCMLSHIHSSKIDGLMRD 83
            ++  G  N  ADA+SR                      K   LC    IH  ++     +
Sbjct: 1019 EYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKEL--TQHN 1078

Query: 84   IIKEHLHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHD- 143
            +  E +    S +  +EL++    R+ +   D +I   +RL VP   + +  +++  HD 
Sbjct: 1079 VTPEDMSAFRSYQKKLELSET--FRKNYSLEDEMIYYQDRLVVPI--KQQNAVMRLYHDH 1138

Query: 144  TLWAGHPGWQRTYALIKKGYFWQNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPT 203
            TL+ GH G   T A I   Y+W  ++  I+QY +TC+ CQ  K  + ++ GLL+PLP+  
Sbjct: 1139 TLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAE 1198

Query: 204  RPWESVSLDFITHLPKV-GEYDAILVIVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKL 263
              W  +S+DF+T LP      + ILV+VDRFSK A FI T K   A     L F+++   
Sbjct: 1199 GRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSY 1258

Query: 264  SGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFI 323
             G P +I SDRD R     + EL   LG    +SS+ HPQTDGQ+ER    L   LR ++
Sbjct: 1259 HGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYV 1318

Query: 324  DARQKNWIQLLDVAQFCFNCQTSSSTGKSPFEIVSGRQPALPHI-IDHPYAGKNPQAHNF 383
                +NW   L   +F +N   + + GKSPFEI  G  P  P I  D     ++  A   
Sbjct: 1319 STNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVEL 1378

Query: 384  TREWKQTTNIARAYLEKASKHMKKWADKKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRL 443
             +  K  T   +  LE A   M+   +++R+PL    GD VL+        F+     ++
Sbjct: 1379 AKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGAYMKV 1438

Query: 444  VRKYEGPVEVLKKIEATSYRVALPAWMKIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDL 493
             + Y GP  V+KKI   +Y + L +  K H VI+V  LK  +       +  T R+N   
Sbjct: 1439 QQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKSLY-----TVQTRTQRINQSA 1496

[Close]

BLAST of CmoCh00G000800 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 202.2 bits (513), Expect = 1.5e-50
Identity = 150/471 (31.85%), Postives = 223/471 (47.35%), Query Frame = 0


Query: 24   DFALGKSNQAADALSRK--------------------GKHAALCMLSHIHSSKIDGLMRD 83
            ++  G  N  ADA+SR                      K   LC    IH  ++     +
Sbjct: 993  EYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKEL--TQHN 1052

Query: 84   IIKEHLHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHD- 143
            +  E +    S +  +EL++    R+ +   D +I   +RL VP   + +  +++  HD 
Sbjct: 1053 VTPEDMSAFRSYQKKLELSET--FRKNYSLEDEMIYYQDRLVVPI--KQQNAVMRLYHDH 1112

Query: 144  TLWAGHPGWQRTYALIKKGYFWQNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPT 203
            TL+ GH G   T A I   Y+W  ++  I+QY +TC+ CQ  K  + ++ GLL+PLP+  
Sbjct: 1113 TLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAE 1172

Query: 204  RPWESVSLDFITHLPKV-GEYDAILVIVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKL 263
              W  +S+DF+T LP      + ILV+VDRFSK A FI T K   A     L F+++   
Sbjct: 1173 GRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSY 1232

Query: 264  SGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFI 323
             G P +I SDRD R     + EL   LG    +SS+ HPQTDGQ+ER    L   LR + 
Sbjct: 1233 HGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYA 1292

Query: 324  DARQKNWIQLLDVAQFCFNCQTSSSTGKSPFEIVSGRQPALPHI-IDHPYAGKNPQAHNF 383
                +NW   L   +F +N   + + GKSPFEI  G  P  P I  D     ++  A   
Sbjct: 1293 STNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVEL 1352

Query: 384  TREWKQTTNIARAYLEKASKHMKKWADKKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRL 443
             +  K  T   +  LE A   M+   +++R+PL    GD VL+        F+     ++
Sbjct: 1353 AKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGAYMKV 1412

Query: 444  VRKYEGPVEVLKKIEATSYRVALPAWMKIHPVIHVSNLKPYHPDPDDDQRN 472
             + Y GP  V+KKI   +Y + L +  K H VI+V  LK +   PD   +N
Sbjct: 1413 QQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKFVYRPDAYPKN 1454

[Close]

BLAST of CmoCh00G000800 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.4e-50
Identity = 141/479 (29.44%), Postives = 231/479 (48.23%), Query Frame = 0


Query: 28   GKSNQAADALSR----------KGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKA 87
            G +N  ADALSR            +  ++  ++ I  S  D     ++ E+ + D     
Sbjct: 820  GSANHIADALSRIVDETEPIPKDSEDNSINFVNQI--SITDDFKNQVVTEYTN-DTKLLN 879

Query: 88   VVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYAL 147
            ++            ++  LLI   +++ +P   +L + +I++ H+     HPG +    +
Sbjct: 880  LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 939

Query: 148  IKKGYFWQNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLP 207
            I + + W+ +R  I +Y + C  CQ +K    K  G L+P+P   RPWES+S+DFIT LP
Sbjct: 940  ILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 999

Query: 208  KVGEYDAILVIVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFI 267
            +   Y+A+ V+VDRFSK A  +P  K  +AE TA++F + V+   G P  II+D D  F 
Sbjct: 1000 ESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFT 1059

Query: 268  GTFWTELFAFLGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQF 327
               W +        +  S  Y PQTDGQTER N  +E+ LR         W+  + + Q 
Sbjct: 1060 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1119

Query: 328  CFNCQTSSSTGKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEK 387
             +N    S+T  +PFEIV    PAL  +    ++ K  +    ++E  Q     + +L  
Sbjct: 1120 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQTVKEHLNT 1179

Query: 388  ASKHMKKWADKKRRPL-QFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEA 447
             +  MKK+ D K + + +F+ GD V++K        +S K   L   + GP  VL+K   
Sbjct: 1180 NNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNK---LAPSFAGPFYVLQKSGP 1239

Query: 448  TSYRVALPAWMK--IHPVIHVSNLKPYHPDPD-----DDQRNATTRLNIDLQQKETKEV 489
             +Y + LP  +K       HVS+L+ Y  + +      D+ +  T L+I L+ K  ++V
Sbjct: 1240 NNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHI-LEHKNREQV 1288

[Close]

BLAST of CmoCh00G000800 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.4e-50
Identity = 141/479 (29.44%), Postives = 231/479 (48.23%), Query Frame = 0


Query: 28   GKSNQAADALSR----------KGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKA 87
            G +N  ADALSR            +  ++  ++ I  S  D     ++ E+ + D     
Sbjct: 820  GSANHIADALSRIVDETEPIPKDSEDNSINFVNQI--SITDDFKNQVVTEYTN-DTKLLN 879

Query: 88   VVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYAL 147
            ++            ++  LLI   +++ +P   +L + +I++ H+     HPG +    +
Sbjct: 880  LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 939

Query: 148  IKKGYFWQNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLP 207
            I + + W+ +R  I +Y + C  CQ +K    K  G L+P+P   RPWES+S+DFIT LP
Sbjct: 940  ILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 999

Query: 208  KVGEYDAILVIVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFI 267
            +   Y+A+ V+VDRFSK A  +P  K  +AE TA++F + V+   G P  II+D D  F 
Sbjct: 1000 ESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFT 1059

Query: 268  GTFWTELFAFLGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQF 327
               W +        +  S  Y PQTDGQTER N  +E+ LR         W+  + + Q 
Sbjct: 1060 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1119

Query: 328  CFNCQTSSSTGKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEK 387
             +N    S+T  +PFEIV    PAL  +    ++ K  +    ++E  Q     + +L  
Sbjct: 1120 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQTVKEHLNT 1179

Query: 388  ASKHMKKWADKKRRPL-QFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEA 447
             +  MKK+ D K + + +F+ GD V++K        +S K   L   + GP  VL+K   
Sbjct: 1180 NNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNK---LAPSFAGPFYVLQKSGP 1239

Query: 448  TSYRVALPAWMK--IHPVIHVSNLKPYHPDPD-----DDQRNATTRLNIDLQQKETKEV 489
             +Y + LP  +K       HVS+L+ Y  + +      D+ +  T L+I L+ K  ++V
Sbjct: 1240 NNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHI-LEHKNREQV 1288

[Close]

BLAST of CmoCh00G000800 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.4e-50
Identity = 141/479 (29.44%), Postives = 231/479 (48.23%), Query Frame = 0


Query: 28   GKSNQAADALSR----------KGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKA 87
            G +N  ADALSR            +  ++  ++ I  S  D     ++ E+ + D     
Sbjct: 820  GSANHIADALSRIVDETEPIPKDSEDNSINFVNQI--SITDDFKNQVVTEYTN-DTKLLN 879

Query: 88   VVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYAL 147
            ++            ++  LLI   +++ +P   +L + +I++ H+     HPG +    +
Sbjct: 880  LLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNI 939

Query: 148  IKKGYFWQNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLP 207
            I + + W+ +R  I +Y + C  CQ +K    K  G L+P+P   RPWES+S+DFIT LP
Sbjct: 940  ILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 999

Query: 208  KVGEYDAILVIVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFI 267
            +   Y+A+ V+VDRFSK A  +P  K  +AE TA++F + V+   G P  II+D D  F 
Sbjct: 1000 ESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFT 1059

Query: 268  GTFWTELFAFLGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQF 327
               W +        +  S  Y PQTDGQTER N  +E+ LR         W+  + + Q 
Sbjct: 1060 SQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQ 1119

Query: 328  CFNCQTSSSTGKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEK 387
             +N    S+T  +PFEIV    PAL  +    ++ K  +    ++E  Q     + +L  
Sbjct: 1120 SYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQTVKEHLNT 1179

Query: 388  ASKHMKKWADKKRRPL-QFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEA 447
             +  MKK+ D K + + +F+ GD V++K        +S K   L   + GP  VL+K   
Sbjct: 1180 NNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNK---LAPSFAGPFYVLQKSGP 1239

Query: 448  TSYRVALPAWMK--IHPVIHVSNLKPYHPDPD-----DDQRNATTRLNIDLQQKETKEV 489
             +Y + LP  +K       HVS+L+ Y  + +      D+ +  T L+I L+ K  ++V
Sbjct: 1240 NNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHI-LEHKNREQV 1288

[Close]

BLAST of CmoCh00G000800 vs. ExPASy TrEMBL
Match: A0A5A7V814 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00400 PE=4 SV=1)

HSP 1 Score: 878.2 bits (2268), Expect = 1.7e-251
Identity = 431/616 (69.97%), Postives = 487/616 (79.06%), Query Frame = 0


Query: 1    MTRGPVLGLVDVTKPFEVETDASDFALG-------------------------------- 60
            +  GP+LG+ DVTKPFEVETDASD+ALG                                
Sbjct: 915  LMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYEIRKLNAAERRVVVCSEDGN 974

Query: 61   -----------------------------------KSNQAADALSRKGKHAALCMLSHIH 120
                                                SNQAADALSRK +HAA+C+L+H+ 
Sbjct: 975  SATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKESSNQAADALSRKQEHAAICLLAHLQ 1034

Query: 121  SSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELR 180
             S+I G +RD ++E L KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G+LR
Sbjct: 1035 GSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLR 1094

Query: 181  KKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNMRDDIMQYTKTCLICQQDKVEKAKVSG 240
            KKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NMRDD+MQYTKTCLICQQDKVEK KV+G
Sbjct: 1095 KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVEKVKVAG 1154

Query: 241  LLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPKLCSAELTAQL 300
            LL+PLPVPTRPWESVS+DFITHLPKVG+++AILVI+DRFSKYATFIP  K CSAE TAQL
Sbjct: 1155 LLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETTAQL 1214

Query: 301  FFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTERFNCLL 360
            FFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+FLGT+LNISSSYHPQTDGQTERFN +L
Sbjct: 1215 FFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSML 1274

Query: 361  EEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSSTGKSPFEIVSGRQPALPHIIDHPYAGK 420
            EEYLRHF++ARQKNW+QLLDVAQFCFN QTSSSTG+SPFEIVSGRQP LPH+IDHP+AGK
Sbjct: 1275 EEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLIDHPFAGK 1334

Query: 421  NPQAHNFTREWKQTTNIARAYLEKASKHMKKWADKKRRPLQFRAGDQVLIKLRPEQIRFR 480
            NPQA NFT+EW+QT +IARAYLEKASK MKKW DKKRRPL+FRAGDQVLIKLRPEQ+RFR
Sbjct: 1335 NPQALNFTKEWRQTNDIARAYLEKASKRMKKWVDKKRRPLEFRAGDQVLIKLRPEQVRFR 1394

Query: 481  SRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWMKIHPVIHVSNLKPYHPDPDDDQRNAT 540
             RKDQRLVRKYEGPVEVLKK+  TSYRVALP WMKI+PVIHVSNLKPYH D +D QRN  
Sbjct: 1395 GRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVV 1454

Query: 541  TRLNIDLQQKETKEVEEILADRVRKIGRPVRTIREFLIKWKNLPKEETSWERAEDLNFAA 550
            TR  IDL QKE K+VEEILA+RVR+  RP R I E+L+KWKNLP EETSWER EDL    
Sbjct: 1455 TRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWK 1514

[Close]

BLAST of CmoCh00G000800 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)

HSP 1 Score: 865.9 bits (2236), Expect = 8.9e-248
Identity = 412/522 (78.93%), Postives = 463/522 (88.70%), Query Frame = 0


Query: 28   GKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKT 87
            G SNQAADALSRK +HAA+C+L+H+  S+I G +RD ++E L KD +A+ V+ LAKAGKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 88   RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNM 147
            RQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NM
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 148  RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILV 207
            RDD+MQYTKTCLICQQDKVEK KV+GLL+PLPVPTRPWESVS+DFITHLPKVG+++AILV
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1244

Query: 208  IVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAF 267
            I+DRFSKYATFIP  K CSAE TAQLFFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+F
Sbjct: 1245 IIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSF 1304

Query: 268  LGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSST 327
            LGT+LNISSSYHPQTDGQTERFN +LEEYLRHF++ARQKNW+QLLDVAQFCFN QTSSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 328  GKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWAD 387
            G+SPFEIVSGRQP LPH++DHP+AGKNPQA NFT+EW+QT +IARAYLEKASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 388  KKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWM 447
            KKRRPL+FRAGDQVLIKLRPEQ+RFR RKDQRLVRKYEGPVEVLKK+  TSYRVALP WM
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWM 1484

Query: 448  KIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIR 507
            KI+PVIHVSNLKPYH D +D QRN  TR  IDL QKE K+VEEILA+RVRK  RP R I 
Sbjct: 1485 KIYPVIHVSNLKPYHQDTEDLQRNVVTRPIIDLSQKEDKDVEEILAERVRKSRRPARRIH 1544

Query: 508  EFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTST 550
            E+L+KWKNLP EETSWER EDL      I  ++ R LTGTST
Sbjct: 1545 EYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmoCh00G000800 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 865.1 bits (2234), Expect = 1.5e-247
Identity = 411/522 (78.74%), Postives = 463/522 (88.70%), Query Frame = 0


Query: 28   GKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKT 87
            G SNQAADALSRK +HAA+C+L+H+  S+I G +RD ++E L KD +A+ V+ LAKAGKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 88   RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNM 147
            RQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NM
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 148  RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILV 207
            RDD+MQYTKTCLICQQDKVEK KV+GLL+PLPVPTRPWESVS+DFITHLPKVG+++AILV
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1244

Query: 208  IVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAF 267
            I+DRFSKYATFIP  K CSAE TAQLFFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+F
Sbjct: 1245 IIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSF 1304

Query: 268  LGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSST 327
            LGT+LNISSSYHPQTDGQTERFN +LEEYLRHF++ARQKNW+QLLDVAQFCFN QTSSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 328  GKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWAD 387
            G+SPFEIVSGRQP LPH++DHP+AGKNPQA NFT+EW+QT +IARAYLEKASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 388  KKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWM 447
            KKRRPL+FRAGDQVLIKLRPEQ+RFR RKDQRLVRKYEGPVEVLKK+  TSYRVALP WM
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWM 1484

Query: 448  KIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIR 507
            KI+PVIHVSNLKPYH D +D QRN  TR  IDL QKE K+VEEILA+RVR+  RP R I 
Sbjct: 1485 KIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIH 1544

Query: 508  EFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTST 550
            E+L+KWKNLP EETSWER EDL      I  ++ R LTGTST
Sbjct: 1545 EYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmoCh00G000800 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 865.1 bits (2234), Expect = 1.5e-247
Identity = 411/522 (78.74%), Postives = 463/522 (88.70%), Query Frame = 0


Query: 28   GKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKT 87
            G SNQAADALSRK +HAA+C+L+H+  S+I G +RD ++E L KD +A+ V+ LAKAGKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 88   RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNM 147
            RQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NM
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 148  RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILV 207
            RDD+MQYTKTCLICQQDKVEK KV+GLL+PLPVPTRPWESVS+DFITHLPKVG+++AILV
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1244

Query: 208  IVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAF 267
            I+DRFSKYATFIP  K CSAE TAQLFFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+F
Sbjct: 1245 IIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSF 1304

Query: 268  LGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSST 327
            LGT+LNISSSYHPQTDGQTERFN +LEEYLRHF++ARQKNW+QLLDVAQFCFN QTSSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 328  GKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWAD 387
            G+SPFEIVSGRQP LPH++DHP+AGKNPQA NFT+EW+QT +IARAYLEKASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 388  KKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWM 447
            KKRRPL+FRAGDQVLIKLRPEQ+RFR RKDQRLVRKYEGPVEVLKK+  TSYRVALP WM
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWM 1484

Query: 448  KIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIR 507
            KI+PVIHVSNLKPYH D +D QRN  TR  IDL QKE K+VEEILA+RVR+  RP R I 
Sbjct: 1485 KIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIH 1544

Query: 508  EFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTST 550
            E+L+KWKNLP EETSWER EDL      I  ++ R LTGTST
Sbjct: 1545 EYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmoCh00G000800 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 865.1 bits (2234), Expect = 1.5e-247
Identity = 411/522 (78.74%), Postives = 463/522 (88.70%), Query Frame = 0


Query: 28   GKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKT 87
            G SNQAADALSRK +HAA+C+L+H+  S+I G +RD ++E L KD +A+ V+ LAKAGKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 88   RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNM 147
            RQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NM
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 148  RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILV 207
            RDD+MQYTKTCLICQQDKVEK KV+GLL+PLPVPTRPWESVS+DFITHLPKVG+++AILV
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1244

Query: 208  IVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAF 267
            I+DRFSKYATFIP  K CSAE TAQLFFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+F
Sbjct: 1245 IIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSF 1304

Query: 268  LGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSST 327
            LGT+LNISSSYHPQTDGQTERFN +LEEYLRHF++ARQKNW+QLLDVAQFCFN QTSSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 328  GKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWAD 387
            G+SPFEIVSGRQP LPH++DHP+AGKNPQA NFT+EW+QT +IARAYLEKASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 388  KKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWM 447
            KKRRPL+FRAGDQVLIKLRPEQ+RFR RKDQRLVRKYEGPVEVLKK+  TSYRVALP WM
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWM 1484

Query: 448  KIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIR 507
            KI+PVIHVSNLKPYH D +D QRN  TR  IDL QKE K+VEEILA+RVR+  RP R I 
Sbjct: 1485 KIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIH 1544

Query: 508  EFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTST 550
            E+L+KWKNLP EETSWER EDL      I  ++ R LTGTST
Sbjct: 1545 EYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmoCh00G000800 vs. NCBI nr
Match: KAA0062556.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 878.2 bits (2268), Expect = 3.6e-251
Identity = 431/616 (69.97%), Postives = 487/616 (79.06%), Query Frame = 0


Query: 1    MTRGPVLGLVDVTKPFEVETDASDFALG-------------------------------- 60
            +  GP+LG+ DVTKPFEVETDASD+ALG                                
Sbjct: 915  LMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYEIRKLNAAERRVVVCSEDGN 974

Query: 61   -----------------------------------KSNQAADALSRKGKHAALCMLSHIH 120
                                                SNQAADALSRK +HAA+C+L+H+ 
Sbjct: 975  SATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKESSNQAADALSRKQEHAAICLLAHLQ 1034

Query: 121  SSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELR 180
             S+I G +RD ++E L KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G+LR
Sbjct: 1035 GSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLR 1094

Query: 181  KKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNMRDDIMQYTKTCLICQQDKVEKAKVSG 240
            KKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NMRDD+MQYTKTCLICQQDKVEK KV+G
Sbjct: 1095 KKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNMRDDVMQYTKTCLICQQDKVEKVKVAG 1154

Query: 241  LLEPLPVPTRPWESVSLDFITHLPKVGEYDAILVIVDRFSKYATFIPTPKLCSAELTAQL 300
            LL+PLPVPTRPWESVS+DFITHLPKVG+++AILVI+DRFSKYATFIP  K CSAE TAQL
Sbjct: 1155 LLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETTAQL 1214

Query: 301  FFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAFLGTTLNISSSYHPQTDGQTERFNCLL 360
            FFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+FLGT+LNISSSYHPQTDGQTERFN +L
Sbjct: 1215 FFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSML 1274

Query: 361  EEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSSTGKSPFEIVSGRQPALPHIIDHPYAGK 420
            EEYLRHF++ARQKNW+QLLDVAQFCFN QTSSSTG+SPFEIVSGRQP LPH+IDHP+AGK
Sbjct: 1275 EEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLIDHPFAGK 1334

Query: 421  NPQAHNFTREWKQTTNIARAYLEKASKHMKKWADKKRRPLQFRAGDQVLIKLRPEQIRFR 480
            NPQA NFT+EW+QT +IARAYLEKASK MKKW DKKRRPL+FRAGDQVLIKLRPEQ+RFR
Sbjct: 1335 NPQALNFTKEWRQTNDIARAYLEKASKRMKKWVDKKRRPLEFRAGDQVLIKLRPEQVRFR 1394

Query: 481  SRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWMKIHPVIHVSNLKPYHPDPDDDQRNAT 540
             RKDQRLVRKYEGPVEVLKK+  TSYRVALP WMKI+PVIHVSNLKPYH D +D QRN  
Sbjct: 1395 GRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVV 1454

Query: 541  TRLNIDLQQKETKEVEEILADRVRKIGRPVRTIREFLIKWKNLPKEETSWERAEDLNFAA 550
            TR  IDL QKE K+VEEILA+RVR+  RP R I E+L+KWKNLP EETSWER EDL    
Sbjct: 1455 TRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWK 1514

[Close]

BLAST of CmoCh00G000800 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 865.9 bits (2236), Expect = 1.8e-247
Identity = 412/522 (78.93%), Postives = 463/522 (88.70%), Query Frame = 0


Query: 28   GKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKT 87
            G SNQAADALSRK +HAA+C+L+H+  S+I G +RD ++E L KD +A+ V+ LAKAGKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 88   RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNM 147
            RQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NM
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 148  RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILV 207
            RDD+MQYTKTCLICQQDKVEK KV+GLL+PLPVPTRPWESVS+DFITHLPKVG+++AILV
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1244

Query: 208  IVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAF 267
            I+DRFSKYATFIP  K CSAE TAQLFFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+F
Sbjct: 1245 IIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSF 1304

Query: 268  LGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSST 327
            LGT+LNISSSYHPQTDGQTERFN +LEEYLRHF++ARQKNW+QLLDVAQFCFN QTSSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 328  GKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWAD 387
            G+SPFEIVSGRQP LPH++DHP+AGKNPQA NFT+EW+QT +IARAYLEKASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 388  KKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWM 447
            KKRRPL+FRAGDQVLIKLRPEQ+RFR RKDQRLVRKYEGPVEVLKK+  TSYRVALP WM
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWM 1484

Query: 448  KIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIR 507
            KI+PVIHVSNLKPYH D +D QRN  TR  IDL QKE K+VEEILA+RVRK  RP R I 
Sbjct: 1485 KIYPVIHVSNLKPYHQDTEDLQRNVVTRPIIDLSQKEDKDVEEILAERVRKSRRPARRIH 1544

Query: 508  EFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTST 550
            E+L+KWKNLP EETSWER EDL      I  ++ R LTGTST
Sbjct: 1545 EYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmoCh00G000800 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 865.1 bits (2234), Expect = 3.1e-247
Identity = 411/522 (78.74%), Postives = 463/522 (88.70%), Query Frame = 0


Query: 28   GKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKT 87
            G SNQAADALSRK +HAA+C+L+H+  S+I G +RD ++E L KD +A+ V+ LAKAGKT
Sbjct: 1061 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1120

Query: 88   RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNM 147
            RQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NM
Sbjct: 1121 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1180

Query: 148  RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILV 207
            RDD+MQYTKTCLICQQDKVEK KV+GLL+PLPVPTRPWESVS+DFITHLPKVG+++AILV
Sbjct: 1181 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1240

Query: 208  IVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAF 267
            I+DRFSKYATFIP  K CSAE TAQLFFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+F
Sbjct: 1241 IIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSF 1300

Query: 268  LGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSST 327
            LGT+LNISSSYHPQTDGQTERFN +LEEYLRHF++ARQKNW+QLLDVAQFCFN QTSSST
Sbjct: 1301 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1360

Query: 328  GKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWAD 387
            G+SPFEIVSGRQP LPH++DHP+AGKNPQA NFT+EW+QT +IARAYLEKASK MKKWAD
Sbjct: 1361 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1420

Query: 388  KKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWM 447
            KKRRPL+FRAGDQVLIKLRPEQ+RFR RKDQRLVRKYEGPVEVLKK+  TSYRVALP WM
Sbjct: 1421 KKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWM 1480

Query: 448  KIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIR 507
            KI+PVIHVSNLKPYH D +D QRN  TR  IDL QKE K+VEEILA+RVR+  RP R I 
Sbjct: 1481 KIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIH 1540

Query: 508  EFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTST 550
            E+L+KWKNLP EETSWER EDL      I  ++ R LTGTST
Sbjct: 1541 EYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1582

[Close]

BLAST of CmoCh00G000800 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 865.1 bits (2234), Expect = 3.1e-247
Identity = 411/522 (78.74%), Postives = 463/522 (88.70%), Query Frame = 0


Query: 28   GKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKT 87
            G SNQAADALSRK +HAA+C+L+H+  S+I G +RD ++E L KD +A+ V+ LAKAGKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 88   RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNM 147
            RQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NM
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 148  RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILV 207
            RDD+MQYTKTCLICQQDKVEK KV+GLL+PLPVPTRPWESVS+DFITHLPKVG+++AILV
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1244

Query: 208  IVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAF 267
            I+DRFSKYATFIP  K CSAE TAQLFFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+F
Sbjct: 1245 IIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSF 1304

Query: 268  LGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSST 327
            LGT+LNISSSYHPQTDGQTERFN +LEEYLRHF++ARQKNW+QLLDVAQFCFN QTSSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 328  GKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWAD 387
            G+SPFEIVSGRQP LPH++DHP+AGKNPQA NFT+EW+QT +IARAYLEKASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 388  KKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWM 447
            KKRRPL+FRAGDQVLIKLRPEQ+RFR RKDQRLVRKYEGPVEVLKK+  TSYRVALP WM
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWM 1484

Query: 448  KIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIR 507
            KI+PVIHVSNLKPYH D +D QRN  TR  IDL QKE K+VEEILA+RVR+  RP R I 
Sbjct: 1485 KIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIH 1544

Query: 508  EFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTST 550
            E+L+KWKNLP EETSWER EDL      I  ++ R LTGTST
Sbjct: 1545 EYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmoCh00G000800 vs. NCBI nr
Match: TYK28713.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 865.1 bits (2234), Expect = 3.1e-247
Identity = 411/522 (78.74%), Postives = 463/522 (88.70%), Query Frame = 0


Query: 28   GKSNQAADALSRKGKHAALCMLSHIHSSKIDGLMRDIIKEHLHKDPSAKAVVELAKAGKT 87
            G SNQAADALSRK +HAA+C+L+H+  S+I G +RD ++E L KD +A+ V+ LAKAGKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 88   RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWQNM 147
            RQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYAL+KKGYFW NM
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 148  RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRPWESVSLDFITHLPKVGEYDAILV 207
            RDD+MQYTKTCLICQQDKVEK KV+GLL+PLPVPTRPWESVS+DFITHLPKVG+++AILV
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1244

Query: 208  IVDRFSKYATFIPTPKLCSAELTAQLFFKHVVKLSGIPSSIISDRDGRFIGTFWTELFAF 267
            I+DRFSKYATFIP  K CSAE TAQLFFKHVVKL G+P+SI+SDRDGRFIG+FWTELF+F
Sbjct: 1245 IIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSF 1304

Query: 268  LGTTLNISSSYHPQTDGQTERFNCLLEEYLRHFIDARQKNWIQLLDVAQFCFNCQTSSST 327
            LGT+LNISSSYHPQTDGQTERFN +LEEYLRHF++ARQKNW+QLLDVAQFCFN QTSSST
Sbjct: 1305 LGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSST 1364

Query: 328  GKSPFEIVSGRQPALPHIIDHPYAGKNPQAHNFTREWKQTTNIARAYLEKASKHMKKWAD 387
            G+SPFEIVSGRQP LPH++DHP+AGKNPQA NFT+EW+QT +IARAYLEKASK MKKWAD
Sbjct: 1365 GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWAD 1424

Query: 388  KKRRPLQFRAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKKIEATSYRVALPAWM 447
            KKRRPL+FRAGDQVLIKLRPEQ+RFR RKDQRLVRKYEGPVEVLKK+  TSYRVALP WM
Sbjct: 1425 KKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWM 1484

Query: 448  KIHPVIHVSNLKPYHPDPDDDQRNATTRLNIDLQQKETKEVEEILADRVRKIGRPVRTIR 507
            KI+PVIHVSNLKPYH D +D QRN  TR  IDL QKE K+VEEILA+RVR+  RP R I 
Sbjct: 1485 KIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIH 1544

Query: 508  EFLIKWKNLPKEETSWERAEDLNFAATHIARYESRWLTGTST 550
            E+L+KWKNLP EETSWER EDL      I  ++ R LTGTST
Sbjct: 1545 EYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLRQLTGTST 1586

[Close]

BLAST of CmoCh00G000800 vs. TAIR 10
Match: AT2G13370.1 (chromatin remodeling 5 )

HSP 1 Score: 46.2 bits (108), Expect = 9.8e-05
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 483 KETKEVEEILADRVRKIGRPVRTIREFLIKWKNLPKEETSWERAEDLNFAATHIARYESR 542
           K+  +VE I+ADR+ K G     + E+L+KW+ L   E +WE+  D+ FA   I  Y++R
Sbjct: 530 KQNSQVERIIADRISKDGLG-DVVPEYLVKWQGLSYAEATWEKDVDIAFAQVAIDEYKAR 588

The following BLAST results are available for this feature:

BLAST of CmoCh00G000800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	8.8e-51	31.10	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.5e-50	31.85	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.4e-50	29.44	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.4e-50	29.44	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.4e-50	29.44	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh00G000800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V814	1.7e-251	69.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79...	[more]
A0A5A7SUK4	8.9e-248	78.93	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]
A0A5D3C4R1	1.5e-247	78.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	1.5e-247	78.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5D3BYE6	1.5e-247	78.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]

BLAST of CmoCh00G000800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062556.1	3.6e-251	69.97	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	1.8e-247	78.93	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	3.1e-247	78.74	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	3.1e-247	78.74	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
TYK28713.1	3.1e-247	78.74	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh00G000800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G13370.1	9.8e-05	38.33	chromatin remodeling 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 484..544 e-value: 7.1E-7 score: 38.8
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 486..550 score: 12.847101
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 487..542 e-value: 1.1E-11 score: 44.4
None	No IPR available	GENE3D	1.10.340.70		coord: 76..165 e-value: 3.1E-20 score: 74.2
None	No IPR available	GENE3D	2.40.50.40		coord: 481..542 e-value: 9.4E-12 score: 46.4
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 102..341
None	No IPR available	CDD	cd00024	CD_CSD	coord: 487..541 e-value: 1.18553E-9 score: 52.0941
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 111..165 e-value: 2.5E-20 score: 72.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 175..378 e-value: 4.3E-45 score: 155.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 180..339 score: 22.272762
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 177..333
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 447..542

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G000800.1	CmoCh00G000800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding