CmoCh00G000690 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh00G000690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCytochrome c biogenesis FC
LocationCmo_Chr00: 15506438 .. 15508044 (-)
RNA-Seq ExpressionCmoCh00G000690
SyntenyCmoCh00G000690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGACGAATCGCGAACATCAAAATTTCTGGTTGACCATGTTCCCAGAAAAAGAAACTTTCGAGAAAGGACGAGCACGACTGAAGTAGCTATACATAATAATCCATTTACAGATCTATATGCTTCAATTGGAACTGGAAGTTCCAGAACAGGCGGCTGGTATACCAACATAATGAAACTGCCTTTTCTTTTTTTGATTCGGATAGGATTTATGTTGGCTTCGTTGGGAGGCTCGCGTAGTTTGTTACGTCAGCTACAAAAGGATAAGTTGCGTTGGAATTGAGAAAGTTCCGTGGAGTTCATAATTGCAATAAAGGAGGAGAAGTAGTGGGGCGCGTCAAGGCACTTCTTGGTCCCCGTCCGCCCGGCCTGCCGTCCAGCTCTGAAGAATTCATGGGCCGGAGAGCCTACAGGACAAGGGGTACTACTAACCAAACCAAGCCTAGTCCTCGCCGATAGGGGTAGCTTGCTAAAAAGCCTTGACAACTGGAAGAAAGAGTTGTGGCCACGGCCCCAAGGAGCCTTAAGCACTTGTACAATGCTCCAGTGGCTCTGGGCAACGAGTAGGATGGAGCTACTTTCTCAACTCTTAGTCAAGCGTCCCATATATATTGAGGGAAGGGAAAAAGCCTCTTTCCTCGCCGGTAGAGGTCAATCCCCTATCACCTTCGGTGCCTCCTTGTGGTCCTTCTCTTTAGCTTTTCCTCGGTCTTGAGAGTTAGAGCTAGTTGATAGGCCACCACATCTGATGCATTGAGATTGAATCTTGGATTTCGAACCTCAAGCCCTATCCAGCAAGGGATGGGATTCTTCGGCGGATTCATTCAAGCCATTGCGAATAAACAATTGGTAGAACTCCACAACTAGAAGAAGTAGGGGCTTTCTTGTACGCTTCCCCCTATCCTAACAAACAAGCGAAGTTTACCCTTTAGAACAAGCTTTGGGTCTATCTATAATCGGAGGGTAGACATTTCTCCCGTAACCTCGATCGCATCTTGTCTCATGTACTTCCCTTTGCCTTTCTGCTGACGCCTTACTTGGACTTGATCCCACCAAATTGAGGCATGACCCCCGGGCTTAGGAATTGAATCTTCACATACTTACTCTCGCTCTTTCCAATCAAAGAACTTTTCAATGCTACTTTTTTAATCAATCAAGTCCTCGGGATGCAATCGGCCATGCTATTTAGAACGTCCACTTTGCACGATCTCCTATTCATTGAAGCTCTTCTCCATTAGAAAGAAGGCCCAATCTCAATTGGTTGGAACTTCTTCTTCATTCATAGTTCCTTGATCATGTGATCGGATCTAGTCGATCGGATTTGAATCGGAGGTCTTGAACTAGAGTTTGTGAAAGACTCTTCCCGATCCTTTCATTTAAGCCCTTTTTTTATTGCCCTAAAAGACGACCCGGTTTCTTCTTTCTTTAATCAATCCGGAAAACTCAAATCCTTTCTTCTCTTGAGTGATTGCTTGAGTTCAGCTAGATTTACTCGTTTTGAGTCCCGATTTGCAGTCCTTGGATGATCTTGCCGATCTTAGTACAATGGATTCCATAGGCCTTTCCCGTTATCTTCCGAAAGAAGCATCTGGAAATGACTTGTAA

mRNA sequence

ATGGATGACGAATCGCGAACATCAAAATTTCTGGTTGACCATGTTCCCAGAAAAAGAAACTTTCGAGAAAGGACGAGCACGACTGAAGTAGCTATACATAATAATCCATTTACAGATCTATATGCTTCAATTGGAACTGGAAGTTCCAGAACAGGCGGCTGCCCTATCCAGCAAGGGATGGGATTCTTCGGCGGATTCATTCAAGCCATTGCGAATAAACAATTGCTAGATTTACTCGTTTTGAGTCCCGATTTGCAGTCCTTGGATGATCTTGCCGATCTTAGTACAATGGATTCCATAGGCCTTTCCCGTTATCTTCCGAAAGAAGCATCTGGAAATGACTTGTAA

Coding sequence (CDS)

ATGGATGACGAATCGCGAACATCAAAATTTCTGGTTGACCATGTTCCCAGAAAAAGAAACTTTCGAGAAAGGACGAGCACGACTGAAGTAGCTATACATAATAATCCATTTACAGATCTATATGCTTCAATTGGAACTGGAAGTTCCAGAACAGGCGGCTGCCCTATCCAGCAAGGGATGGGATTCTTCGGCGGATTCATTCAAGCCATTGCGAATAAACAATTGCTAGATTTACTCGTTTTGAGTCCCGATTTGCAGTCCTTGGATGATCTTGCCGATCTTAGTACAATGGATTCCATAGGCCTTTCCCGTTATCTTCCGAAAGAAGCATCTGGAAATGACTTGTAA

Protein sequence

MDDESRTSKFLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGGCPIQQGMGFFGGFIQAIANKQLLDLLVLSPDLQSLDDLADLSTMDSIGLSRYLPKEASGNDL
Homology
[Close]
BLAST of CmoCh00G000690 vs. ExPASy Swiss-Prot
Match: P93286 (Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMFC PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-10
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 8   SKFLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGG 54
           + F +   P KR FRERTST EVAIH N FTDLYA IGTGSSRTGG
Sbjct: 356 NNFWLTMFPEKRYFRERTSTAEVAIHTNLFTDLYALIGTGSSRTGG 401

[Close]
BLAST of CmoCh00G000690 vs. ExPASy Swiss-Prot
Match: P38451 (Uncharacterized mitochondrial protein ymf2 OS=Marchantia polymorpha OX=3197 GN=YMF2 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-04
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 16  PRKRNF--RERTSTTEVAIHNNPFTDLYASIGTGSSRTG 53
           P KR +   + TSTT+VAIH N FTDLYA IGTGS  TG
Sbjct: 243 PEKRFYFSNQETSTTKVAIHTNLFTDLYALIGTGSFETG 281

[Close]
BLAST of CmoCh00G000690 vs. ExPASy TrEMBL
Match: A0A1J7IKN2 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_01068 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 16  PRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGGC 55
           P KR FRERTSTTEVAIH NPFTD YASIGTGSSRTGGC
Sbjct: 736 PEKRYFRERTSTTEVAIHTNPFTDRYASIGTGSSRTGGC 774

[Close]
BLAST of CmoCh00G000690 vs. ExPASy TrEMBL
Match: A0A6B9MM53 (Cytochrome c biogenesis FC OS=Sesuvium portulacastrum OX=221166 GN=ccmFc PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 10  FLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGG 54
           FL+   P KR FRE TSTTEVAIH NPFTDLYASIGTGSSRTGG
Sbjct: 354 FLLSMFPEKRYFRETTSTTEVAIHTNPFTDLYASIGTGSSRTGG 397

[Close]
BLAST of CmoCh00G000690 vs. ExPASy TrEMBL
Match: A0A219YLW0 (Cytochrome c biogenesis FC OS=Lagerstroemia indica OX=141186 GN=ccmFc PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 8   SKFLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGG 54
           + F +   P KR FRERTSTTEVAIH NPFTDLYASIGTGSSRTGG
Sbjct: 360 NNFWLTMFPEKRYFRERTSTTEVAIHTNPFTDLYASIGTGSSRTGG 405

[Close]
BLAST of CmoCh00G000690 vs. ExPASy TrEMBL
Match: A0A6N2KT43 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS135830 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.1e-10
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 8   SKFLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGGCPIQQ 59
           + F +   P KR FRE TSTTEVAIH N FTDLYASIGTGSSRTGGC ++Q
Sbjct: 291 NNFWLTMFPEKRYFRETTSTTEVAIHTNLFTDLYASIGTGSSRTGGCLLRQ 341

[Close]
BLAST of CmoCh00G000690 vs. ExPASy TrEMBL
Match: A0A6N2KH66 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS25461 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.1e-10
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 8   SKFLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGGCPIQQ 59
           + F +   P KR FRE TSTTEVAIH N FTDLYASIGTGSSRTGGC ++Q
Sbjct: 291 NNFWLTMFPEKRYFRETTSTTEVAIHTNLFTDLYASIGTGSSRTGGCLLRQ 341

[Close]
BLAST of CmoCh00G000690 vs. NCBI nr
Match: KAF3452199.1 (hypothetical protein FNV43_RR08297 [Rhamnella rubrinervis])

HSP 1 Score: 110.5 bits (275), Expect = 9.5e-21
Identity = 64/108 (59.26%), Postives = 67/108 (62.04%), Query Frame = 0 

Query: 8   SKFLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGGCPIQQGMGFFGGFI 67
           + F +   P KR FRE TSTTEVAIH NPFTDLYASIGTGSSRTGGC             
Sbjct: 508 NNFWLTMFPEKRYFRETTSTTEVAIHTNPFTDLYASIGTGSSRTGGC------------- 567

Query: 68  QAIANKQLLDLLVLSPDLQSLDDLADLSTMDSIGLSRYLPKEASGNDL 116
                          PDL+SLDDLA LSTMDSIG SR LPKEASGN L
Sbjct: 568 ---------------PDLKSLDDLAGLSTMDSIGFSRALPKEASGNYL 587

[Close]
BLAST of CmoCh00G000690 vs. NCBI nr
Match: YP_009414455.1 (cytochrome c biogenesis FC [Lagerstroemia indica] >AQS99556.1 cytochrome c biogenesis FC [Lagerstroemia indica])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 8   SKFLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGG 54
           + F +   P KR FRERTSTTEVAIH NPFTDLYASIGTGSSRTGG
Sbjct: 360 NNFWLTMFPEKRYFRERTSTTEVAIHTNPFTDLYASIGTGSSRTGG 405

[Close]
BLAST of CmoCh00G000690 vs. NCBI nr
Match: QHB79535.1 (cytochrome c biogenesis FC [Sesuvium portulacastrum])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 10  FLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGG 54
           FL+   P KR FRE TSTTEVAIH NPFTDLYASIGTGSSRTGG
Sbjct: 354 FLLSMFPEKRYFRETTSTTEVAIHTNPFTDLYASIGTGSSRTGG 397

[Close]
BLAST of CmoCh00G000690 vs. NCBI nr
Match: OIW15545.1 (hypothetical protein TanjilG_01068 [Lupinus angustifolius])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 16  PRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGGC 55
           P KR FRERTSTTEVAIH NPFTD YASIGTGSSRTGGC
Sbjct: 736 PEKRYFRERTSTTEVAIHTNPFTDRYASIGTGSSRTGGC 774

[Close]
BLAST of CmoCh00G000690 vs. NCBI nr
Match: AEN56115.1 (cytochrome c biogenesis FC [Cucumis melo subsp. melo])

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 16  PRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGG 54
           P KR FRERTSTTEVAIH NPFTDLYASIGTGSSRTGG
Sbjct: 366 PEKRYFRERTSTTEVAIHTNPFTDLYASIGTGSSRTGG 403

[Close]
BLAST of CmoCh00G000690 vs. TAIR 10
Match: ATMG00180.1 (cytochrome C biogenesis 452 )

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-12
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 8   SKFLVDHVPRKRNFRERTSTTEVAIHNNPFTDLYASIGTGSSRTGG 54
           + F +   P KR FRERTST EVAIH N FTDLYASIGTGSSRTGG
Sbjct: 356 NNFWLTMFPEKRYFRERTSTAEVAIHTNLFTDLYASIGTGSSRTGG 401

The following BLAST results are available for this feature:
BLAST of CmoCh00G000690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P932864.6e-1071.74Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Arabidopsi... [more]
P384511.7e-0464.10Uncharacterized mitochondrial protein ymf2 OS=Marchantia polymorpha OX=3197 GN=Y... [more]
BLAST of CmoCh00G000690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1J7IKN26.2e-1089.74Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_01068 PE=4 S... [more]
A0A6B9MM536.2e-1081.82Cytochrome c biogenesis FC OS=Sesuvium portulacastrum OX=221166 GN=ccmFc PE=4 SV... [more]
A0A219YLW06.2e-1078.26Cytochrome c biogenesis FC OS=Lagerstroemia indica OX=141186 GN=ccmFc PE=4 SV=1[more]
A0A6N2KT438.1e-1070.59Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS135830 PE=4 SV=... [more]
A0A6N2KH668.1e-1070.59Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS25461 PE=4 SV=1[more]
BLAST of CmoCh00G000690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3452199.19.5e-2159.26hypothetical protein FNV43_RR08297 [Rhamnella rubrinervis][more]
YP_009414455.11.3e-0978.26cytochrome c biogenesis FC [Lagerstroemia indica] >AQS99556.1 cytochrome c bioge... [more]
QHB79535.11.3e-0981.82cytochrome c biogenesis FC [Sesuvium portulacastrum][more]
OIW15545.11.3e-0989.74hypothetical protein TanjilG_01068 [Lupinus angustifolius][more]
AEN56115.12.9e-0992.11cytochrome c biogenesis FC [Cucumis melo subsp. melo][more]
BLAST of CmoCh00G000690 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00180.16.6e-1273.91cytochrome C biogenesis 452 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh00G000690.1CmoCh00G000690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017004 cytochrome complex assembly
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion