CmoCh00G000660 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh00G000660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionBnaAnng36730D protein
LocationCmo_Chr00: 15378514 .. 15378971 (+)
RNA-Seq ExpressionCmoCh00G000660
SyntenyCmoCh00G000660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGGATCCCGCAAACCACCGAGTCTTTGAACACAAGTTGCGCCCGGAGCCTTCTGACCGAGGGCACGTCTGCCTAGGCGTCACGCATCGCTGCCCCCACATACAACACCCACTTAGGTCTGTTGTATTGGTGGGGGCACATGTTGGCCTCCCGTGCGCATCGTCGCATGGATGGCTTAAAATTGAGTCCTCGGCATCTGTTGTCGTGACACTACGGTGGTTGATTCAACCTCGGTACCATGTCTTGATCTCAGCTTGTGTGCCTCCTCTTTGAGAGTGAGGGAGGAATCTTGTGTTGACCCTTTGAACATTGTCCCCAAAGATGATGCTCTCGACGCGACCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCTTAG

mRNA sequence

ATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGGATCCCGCAAACCACCGAGTCTTTGAACACAAGTTGCGCCCGGAGCCTTCTGACCGAGGGCACGTCTGCCTAGGCGTCACGCATCGCTGCCCCCACATACAACACCCACTTAGCTTGTGTGCCTCCTCTTTGAGAGTGAGGGAGGAATCTTGTGTTGACCCTTTGAACATTGTCCCCAAAGATGATGCTCTCGACGCGACCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCTTAG

Coding sequence (CDS)

ATGAAGAACGTAGCAAAATGCGATACTTGGTGTGAATTGCAGGATCCCGCAAACCACCGAGTCTTTGAACACAAGTTGCGCCCGGAGCCTTCTGACCGAGGGCACGTCTGCCTAGGCGTCACGCATCGCTGCCCCCACATACAACACCCACTTAGCTTGTGTGCCTCCTCTTTGAGAGTGAGGGAGGAATCTTGTGTTGACCCTTTGAACATTGTCCCCAAAGATGATGCTCTCGACGCGACCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCTTAG

Protein sequence

MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRCPHIQHPLSLCASSLRVREESCVDPLNIVPKDDALDATPGQAGLPAEFKHINKRRKRNLQGFP
Homology
BLAST of CmoCh00G000660 vs. ExPASy TrEMBL
Match: A0A6J5UZ50 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS31178 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 71/135 (52.59%), Postives = 80/135 (59.26%), Query Frame = 0

Query: 1   MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRCPHIQHPLSL-----CA 60
           MKNVAKCDTWCELQ+P NHRVFE KLRP+P  RGH CLGVT RCP I           CA
Sbjct: 16  MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHACLGVTRRCPPIYSLRGADDGLPCA 75

Query: 61  SSLR----------------VREESCVDPLNI--------VPKDDALDATPGQAGLPAEF 107
           SS                  ++   C+  + +        +    A +ATPGQAGLPAEF
Sbjct: 76  SSRGWHKYQVLGDARHDNQWLQNLGCLSCVVVEHRGLEKKLGSGSAFNATPGQAGLPAEF 135

BLAST of CmoCh00G000660 vs. ExPASy TrEMBL
Match: A0A0J7YM11 (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_017900 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.0e-24
Identity = 71/141 (50.35%), Postives = 75/141 (53.19%), Query Frame = 0

Query: 1   MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHR--CPHI----------- 60
           MKNVAK DTWCEL +P NHRVFE KLRP+P  RGHVCLGVTHR   PHI           
Sbjct: 1   MKNVAKYDTWCELHNPVNHRVFERKLRPKPLGRGHVCLGVTHRVSLPHIVWDGEEDGLPC 60

Query: 61  -----------------QHPLSLCASSLRVREESCVDP-----LNIVPKDDALDATPGQA 107
                            +H +   A        S   P     L   P      ATPGQA
Sbjct: 61  LTGNGWPKKGAPGYKLQRHLVEDKALPSMHPRRSARRPWTRRTLTCCPLRRQTFATPGQA 120

BLAST of CmoCh00G000660 vs. ExPASy TrEMBL
Match: A0A2N9IL11 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52877 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 52/107 (48.60%), Postives = 60/107 (56.07%), Query Frame = 0

Query: 15  DPANHRVFEHKLRPEPSDRGHVCLGVTHRCPHIQ---------------HPLSLCASSLR 74
           +P NHRVFE KLRP P  RGHVCLGVTHRCP                   P+ LC+   R
Sbjct: 389 NPVNHRVFERKLRPTPFGRGHVCLGVTHRCPQTPPPRKGRGISFGGGSWPPVGLCS---R 448

Query: 75  VREESCVDPLNIVPKDDALDATPGQAGLPAEFKHINKRRKRNLQGFP 107
               +     ++ P     +ATPGQAGLPAEFKHINKRRK+ L   P
Sbjct: 449 CDSSTLTRRTHVAP-----NATPGQAGLPAEFKHINKRRKKKLTRIP 487

BLAST of CmoCh00G000660 vs. ExPASy TrEMBL
Match: V4UD02 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029524mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRCP 46
          MKNVAKCDTWCELQ+P NHRVFE KLRP+P  RGHVCLGVTHRCP
Sbjct: 17 MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVTHRCP 61

BLAST of CmoCh00G000660 vs. ExPASy TrEMBL
Match: U5FGY4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G132300 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.0e-16
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1  MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRCPH 47
          MKNVAKCDTWCELQ+P NHRVFE KLRP P  RGHVCLGVTHR PH
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLRPRPLGRGHVCLGVTHRRPH 46

BLAST of CmoCh00G000660 vs. NCBI nr
Match: GEV87049.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 138.7 bits (348), Expect = 3.0e-29
Identity = 77/137 (56.20%), Postives = 82/137 (59.85%), Query Frame = 0

Query: 1   MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRC--------PHIQHPLS 60
           MKNVAKCDTWCELQ+P NHRVFE KLRP P  RGHVCLGVTHR           I  P +
Sbjct: 237 MKNVAKCDTWCELQNPVNHRVFERKLRPTPFGRGHVCLGVTHRVAPNKSLLGADIGLPCA 296

Query: 61  LC-----------------------ASSLRVREESCVDPLNIVPKDDALDATPGQAGLPA 107
            C                        S L  R+ S  +P N +P DDA  ATPGQAGLPA
Sbjct: 297 CCGWRIQDYLRWTHELGVVVKTLVLCSVLVARKNSSNNP-NGLPWDDASTATPGQAGLPA 356

BLAST of CmoCh00G000660 vs. NCBI nr
Match: CAB4279088.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27
Identity = 71/135 (52.59%), Postives = 80/135 (59.26%), Query Frame = 0

Query: 1   MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRCPHIQHPLSL-----CA 60
           MKNVAKCDTWCELQ+P NHRVFE KLRP+P  RGH CLGVT RCP I           CA
Sbjct: 16  MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHACLGVTRRCPPIYSLRGADDGLPCA 75

Query: 61  SSLR----------------VREESCVDPLNI--------VPKDDALDATPGQAGLPAEF 107
           SS                  ++   C+  + +        +    A +ATPGQAGLPAEF
Sbjct: 76  SSRGWHKYQVLGDARHDNQWLQNLGCLSCVVVEHRGLEKKLGSGSAFNATPGQAGLPAEF 135

BLAST of CmoCh00G000660 vs. NCBI nr
Match: KAG2666923.1 (hypothetical protein I3760_15G088000 [Carya illinoinensis])

HSP 1 Score: 127.5 bits (319), Expect = 6.9e-26
Identity = 63/106 (59.43%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 1   MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRCPHIQHPLSLCASSLRV 60
           MKNVAKCDTWCELQ+PANHRVFE KLRP+P  RGHVCLGVTHRCPH      +       
Sbjct: 1   MKNVAKCDTWCELQNPANHRVFERKLRPKPFGRGHVCLGVTHRCPHPNTSYDVYG----- 60

Query: 61  REESCVDPLNIVPKDDALDATPGQAGLPAEFKHINKRRKRNLQGFP 107
                                   AGLPAEFKHINKRRKRNLQGFP
Sbjct: 61  ------------------------AGLPAEFKHINKRRKRNLQGFP 77

BLAST of CmoCh00G000660 vs. NCBI nr
Match: KAG8611767.1 (hypothetical protein MANES_S026816v8 [Manihot esculenta])

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-24
Identity = 69/141 (48.94%), Postives = 79/141 (56.03%), Query Frame = 0

Query: 1   MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRCP--------------- 60
           MKN AKCDTWCELQ+PANHRVFE KLRP+PS RGHVCLGVT   P               
Sbjct: 844 MKNAAKCDTWCELQNPANHRVFERKLRPKPSGRGHVCLGVTQPSPPTPSPRGGGRGGGRW 903

Query: 61  ------HIQHPLSLCASSL-------------RVREESCVDPLNIV-PKDDALDATPGQA 107
                 H   P +  ++++             R R  +  DP      + +A  ATPGQA
Sbjct: 904 PPVCSAHAAGPKAESSAAIATAIGGWKTLGHGRGRTSAERDPETPERSQRNAPTATPGQA 963

BLAST of CmoCh00G000660 vs. NCBI nr
Match: KAG8611946.1 (hypothetical protein MANES_S044716v8 [Manihot esculenta])

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-24
Identity = 69/141 (48.94%), Postives = 79/141 (56.03%), Query Frame = 0

Query: 1   MKNVAKCDTWCELQDPANHRVFEHKLRPEPSDRGHVCLGVTHRCP--------------- 60
           MKN AKCDTWCELQ+PANHRVFE KLRP+PS RGHVCLGVT   P               
Sbjct: 1   MKNAAKCDTWCELQNPANHRVFERKLRPKPSGRGHVCLGVTQPSPPTPSPRGGGSGGGRW 60

Query: 61  ------HIQHPLSLCASSL-------------RVREESCVDPLNIV-PKDDALDATPGQA 107
                 H   P +  ++++             R R  +  DP      + +A  ATPGQA
Sbjct: 61  PPVCSAHAAGPKAESSAAIATAIGGWKTLGHGRGRTSAERDPETPERSQRNAPTATPGQA 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J5UZ501.4e-2752.59Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS31178 PE=4 S... [more]
A0A0J7YM117.0e-2450.35Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_017900 ... [more]
A0A2N9IL111.1e-1648.60Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52877 PE=4 SV=1[more]
V4UD021.4e-1686.67Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029524mg PE=4 ... [more]
U5FGY47.0e-1684.78Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G132300 PE=4 ... [more]
Match NameE-valueIdentityDescription
GEV87049.13.0e-2956.20hypothetical protein [Tanacetum cinerariifolium][more]
CAB4279088.12.8e-2752.59unnamed protein product [Prunus armeniaca][more]
KAG2666923.16.9e-2659.43hypothetical protein I3760_15G088000 [Carya illinoinensis][more]
KAG8611767.18.4e-2448.94hypothetical protein MANES_S026816v8 [Manihot esculenta][more]
KAG8611946.18.4e-2448.94hypothetical protein MANES_S044716v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33220BNAA09G04420D PROTEINcoord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh00G000660.1CmoCh00G000660.1mRNA