CmoCh00G000580 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh00G000580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr00: 11804051 .. 11804902 (-)
RNA-Seq Expression	CmoCh00G000580
Synteny	CmoCh00G000580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCGTCTCCTGAGGCGGAACAACCTGTACCTGAACCTCAAGAGGAGGTTGAAGAAATGCNGCGGTGGTGCAAGTGCATTTTTAGCTAGTGTGACCCTAGATAGCAGTGTTGAACAGGCAGTCTCGTCAGTGCACATTGTCAGGGAATTTGTTGATGTTTTTCCTGAGGATTTGTCAAGTTTGCCCCCTGTTAGGGAAGTTGACTTCGGGATCGACCTAGAACCAGGAACTGCGCCGATCTCCAAGGCACCCTACAGAATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTACAGGACCTATTGGATAAGGGTTTCATACGACCCAGTGTGTCGCCCTGGGGAGCCCCTGTCCTGTTTGTCAAGAAAAAGGATGGATCCCTGCGCCTGTGTATAGATTACAGAGATTTGAATAAGGTCACCATAAAGAATAAGTACCCCCTTCCGAGGATCGACGACTTGTTTGACCAGCTGCAGGGAGCATCGGTATTCTCTAAAATTGACTTGAGGTCAGGATACCATCAATTGAGAATAAGAGAAGAAGATATTCCCAAAACAGCTTTTAGAAGTCGCTATGGACATTATGAATTTCTCGTCATGTCCTTTGGACTTACCAATGCACCAGCCGTCTTCATGGAATTAATGAACAGAGTGTTTAAAGAATTCTTAGACACTTTTGTTATAGTGTTTATTGATGATATCCTGGTGTACTCCAAGTCAGAAGCAGAGCACGAAGGGCATTTGAGAAAAGTTCTGACCNGTGTCGCCCTGGGGAGCCCCTGTTCTGTTTGTCAAGAAGAAAGATGGATCCCTGCGCCTGTGTATAGATTACAGAGAATTGAATAA

mRNA sequence

ATGTCCCGTCTCCTGAGGCGGAACAACCTGTACCTGAACCTCAAGAGGAGGTTGAAGAAATGCNGCGGTGGTGCAAGTGCATTTTTAGCTAGTGTGACCCTAGATAGCAGTGTTGAACAGGCAGTCTCGTCAGTGCACATTGTCAGGGAATTTGTTGATGTTTTTCCTGAGGATTTGTCAAGTTTGCCCCCTGTTAGGGAAGTTGACTTCGGGATCGACCTAGAACCAGGAACTGCGCCGATCTCCAAGGCACCCTACAGAATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTACAGGACCTATTGGATAAGGGTTTCATACGACCCAGTGTGTCGCCCTGGGGAGCCCCTGTCCTGTTTGTCAAGAAAAAGGATGGATCCCTGCGCCTGTGTATAGATTACAGAGATTTGAATAAGGTCACCATAAAGAATAAGTACCCCCTTCCGAGGATCGACGACTTGTTTGACCAGCTGCAGGGAGCATCGGTATTCTCTAAAATTGACTTGAGGTCAGGATACCATCAATTGAGAATAAGAGAAGAAGATATTCCCAAAACAGCTTTTAGAAGTCGCTATGGACATTATGAATTTCTCGTCATGTCCTTTGGACTTACCAATGCACCAGCCGTCTTCATGGAATTAATGAACAGAGTGTTTAAAGAATTCTTAGACACTTTTGTTATAGTGTTTATTGATGATATCCTGGTGTACTCCAAGTCAGAAGCAGAGCACGAAGGGCATTTGAGAAAAGTTCTGACCNGTGTCGCCCTGGGGAGCCCCTGTTCTGTTTGTCAAGAAGAAAGATGGATCCCTGCGCCTGTGTATAGATTACAGAGAATTGAATAA

Coding sequence (CDS)

ATGTCCCGTCTCCTGAGGCGGAACAACCTGTACCTGAACCTCAAGAGGAGGTTGAAGAAATGCNGCGGTGGTGCAAGTGCATTTTTAGCTAGTGTGACCCTAGATAGCAGTGTTGAACAGGCAGTCTCGTCAGTGCACATTGTCAGGGAATTTGTTGATGTTTTTCCTGAGGATTTGTCAAGTTTGCCCCCTGTTAGGGAAGTTGACTTCGGGATCGACCTAGAACCAGGAACTGCGCCGATCTCCAAGGCACCCTACAGAATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTACAGGACCTATTGGATAAGGGTTTCATACGACCCAGTGTGTCGCCCTGGGGAGCCCCTGTCCTGTTTGTCAAGAAAAAGGATGGATCCCTGCGCCTGTGTATAGATTACAGAGATTTGAATAAGGTCACCATAAAGAATAAGTACCCCCTTCCGAGGATCGACGACTTGTTTGACCAGCTGCAGGGAGCATCGGTATTCTCTAAAATTGACTTGAGGTCAGGATACCATCAATTGAGAATAAGAGAAGAAGATATTCCCAAAACAGCTTTTAGAAGTCGCTATGGACATTATGAATTTCTCGTCATGTCCTTTGGACTTACCAATGCACCAGCCGTCTTCATGGAATTAATGAACAGAGTGTTTAAAGAATTCTTAGACACTTTTGTTATAGTGTTTATTGATGATATCCTGGTGTACTCCAAGTCAGAAGCAGAGCACGAAGGGCATTTGAGAAAAGTTCTGACCNGTGTCGCCCTGGGGAGCCCCTGTTCTGTTTGTCAAGAAGAAAGATGGATCCCTGCGCCTGTGTATAGATTACAGAGAATTGAATAA

Protein sequence

MSRLLRRNNLYLNLKRRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLEPGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYGHYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVLTXVALGSPCSVCQEERWIPAPVYRLQRIE

Homology

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BLAST of CmoCh00G000580 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 175.3 bits (443), Expect = 1.0e-42
Identity = 90/208 (43.27%), Postives = 129/208 (62.02%), Query Frame = 0


Query: 47  IVREFVDVFPEDLSSLPPVREVDFGIDLEPGTAPISKAPYRMAPAELRELKEQLQDLLDK 106
           I+R  +   P D++++P    V   I+++PG       PY +     +E+ + +Q LLD 
Sbjct: 567 IIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 626

Query: 107 GFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRDLNKVTIKNKYPLPRIDDLFDQLQGASVF 166
            FI PS SP  +PV+ V KKDG+ RLC+DYR LNK TI + +PLPRID+L  ++  A +F
Sbjct: 627 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 686

Query: 167 SKIDLRSGYHQLRIREEDIPKTAFRSRYGHYEFLVMSFGLTNAPAVFMELMNRVFKEFLD 226
           + +DL SGYHQ+ +  +D  KTAF +  G YE+ VM FGL NAP+ F   M   F++   
Sbjct: 687 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL-- 746

Query: 227 TFVIVFIDDILVYSKSEAEHEGHLRKVL 255
            FV V++DDIL++S+S  EH  HL  VL
Sbjct: 747 RFVNVYLDDILIFSESPEEHWKHLDTVL 768

[Close]

BLAST of CmoCh00G000580 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 175.3 bits (443), Expect = 1.0e-42
Identity = 90/208 (43.27%), Postives = 129/208 (62.02%), Query Frame = 0


Query: 47  IVREFVDVFPEDLSSLPPVREVDFGIDLEPGTAPISKAPYRMAPAELRELKEQLQDLLDK 106
           I+R  +   P D++++P    V   I+++PG       PY +     +E+ + +Q LLD 
Sbjct: 593 IIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 652

Query: 107 GFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRDLNKVTIKNKYPLPRIDDLFDQLQGASVF 166
            FI PS SP  +PV+ V KKDG+ RLC+DYR LNK TI + +PLPRID+L  ++  A +F
Sbjct: 653 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 712

Query: 167 SKIDLRSGYHQLRIREEDIPKTAFRSRYGHYEFLVMSFGLTNAPAVFMELMNRVFKEFLD 226
           + +DL SGYHQ+ +  +D  KTAF +  G YE+ VM FGL NAP+ F   M   F++   
Sbjct: 713 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL-- 772

Query: 227 TFVIVFIDDILVYSKSEAEHEGHLRKVL 255
            FV V++DDIL++S+S  EH  HL  VL
Sbjct: 773 RFVNVYLDDILIFSESPEEHWKHLDTVL 794

[Close]

BLAST of CmoCh00G000580 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-39
Identity = 80/210 (38.10%), Postives = 134/210 (63.81%), Query Frame = 0


Query: 47  IVREFVDVFPE-DLSSLP-PVREVDFGIDLEPGTAPISKAPYRMAPAELRELKEQLQDLL 106
           I +EF D+  E +   LP P++ ++F ++L      +    Y + P +++ + +++   L
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 107 DKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRDLNKVTIKNKYPLPRIDDLFDQLQGAS 166
             G IR S +    PV+FV KK+G+LR+ +DY+ LNK    N YPLP I+ L  ++QG++
Sbjct: 437 KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 167 VFSKIDLRSGYHQLRIREEDIPKTAFRSRYGHYEFLVMSFGLTNAPAVFMELMNRVFKEF 226
           +F+K+DL+S YH +R+R+ D  K AFR   G +E+LVM +G++ APA F   +N +  E 
Sbjct: 497 IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEA 556

Query: 227 LDTFVIVFIDDILVYSKSEAEHEGHLRKVL 255
            ++ V+ ++DDIL++SKSE+EH  H++ VL
Sbjct: 557 KESHVVCYMDDILIHSKSESEHVKHVKDVL 586

[Close]

BLAST of CmoCh00G000580 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-39
Identity = 80/210 (38.10%), Postives = 134/210 (63.81%), Query Frame = 0


Query: 47  IVREFVDVFPE-DLSSLP-PVREVDFGIDLEPGTAPISKAPYRMAPAELRELKEQLQDLL 106
           I +EF D+  E +   LP P++ ++F ++L      +    Y + P +++ + +++   L
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 107 DKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRDLNKVTIKNKYPLPRIDDLFDQLQGAS 166
             G IR S +    PV+FV KK+G+LR+ +DY+ LNK    N YPLP I+ L  ++QG++
Sbjct: 437 KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 167 VFSKIDLRSGYHQLRIREEDIPKTAFRSRYGHYEFLVMSFGLTNAPAVFMELMNRVFKEF 226
           +F+K+DL+S YH +R+R+ D  K AFR   G +E+LVM +G++ APA F   +N +  E 
Sbjct: 497 IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEA 556

Query: 227 LDTFVIVFIDDILVYSKSEAEHEGHLRKVL 255
            ++ V+ ++DDIL++SKSE+EH  H++ VL
Sbjct: 557 KESHVVCYMDDILIHSKSESEHVKHVKDVL 586

[Close]

BLAST of CmoCh00G000580 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-39
Identity = 80/210 (38.10%), Postives = 134/210 (63.81%), Query Frame = 0


Query: 47  IVREFVDVFPE-DLSSLP-PVREVDFGIDLEPGTAPISKAPYRMAPAELRELKEQLQDLL 106
           I +EF D+  E +   LP P++ ++F ++L      +    Y + P +++ + +++   L
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 107 DKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRDLNKVTIKNKYPLPRIDDLFDQLQGAS 166
             G IR S +    PV+FV KK+G+LR+ +DY+ LNK    N YPLP I+ L  ++QG++
Sbjct: 437 KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 167 VFSKIDLRSGYHQLRIREEDIPKTAFRSRYGHYEFLVMSFGLTNAPAVFMELMNRVFKEF 226
           +F+K+DL+S YH +R+R+ D  K AFR   G +E+LVM +G++ APA F   +N +  E 
Sbjct: 497 IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEA 556

Query: 227 LDTFVIVFIDDILVYSKSEAEHEGHLRKVL 255
            ++ V+ ++DDIL++SKSE+EH  H++ VL
Sbjct: 557 KESHVVCYMDDILIHSKSESEHVKHVKDVL 586

[Close]

BLAST of CmoCh00G000580 vs. ExPASy TrEMBL
Match: A0A6J1GZS7 (uncharacterized protein LOC111458730 OS=Cucurbita moschata OX=3662 GN=LOC111458730 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.1e-122
Identity = 223/237 (94.09%), Postives = 227/237 (95.78%), Query Frame = 0


Query: 19  KKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLEPGT 78
           K    GASAFLASVTLDS   QAVSSVHIVREF+DVFPEDL SLPPVREVDFGIDLEPGT
Sbjct: 561 KMIRNGASAFLASVTLDSRNGQAVSSVHIVREFIDVFPEDLPSLPPVREVDFGIDLEPGT 620

Query: 79  APISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRD 138
           APISKAPYRMAPAELRELKEQLQ+LLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYR+
Sbjct: 621 APISKAPYRMAPAELRELKEQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRE 680

Query: 139 LNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYGHYE 198
           LNKVTIKNKYPLPRIDDLFDQLQGA+VFSKIDLRSGYHQLRIREEDIPKT FRSRYGHYE
Sbjct: 681 LNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIREEDIPKTGFRSRYGHYE 740

Query: 199 FLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVLT 256
           FLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSE EHEGHLRKVLT
Sbjct: 741 FLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEVEHEGHLRKVLT 797

[Close]

BLAST of CmoCh00G000580 vs. ExPASy TrEMBL
Match: A0A6J1F3W3 (uncharacterized protein LOC111439772 OS=Cucurbita moschata OX=3662 GN=LOC111439772 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.9e-114
Identity = 212/240 (88.33%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 16  RRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLE 75
           R  K    GASAFLASVTLD+S +Q  SSVHI+REFVDVFPEDL  LP +REVDFGIDLE
Sbjct: 486 RAKKLIHSGASAFLASVTLDNSNKQITSSVHIIREFVDVFPEDLPGLPSIREVDFGIDLE 545

Query: 76  PGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCID 135
           PGT PISKAPYRMA AELRELKEQLQ+LLDKGF RPSVSPWGA VLFVKKKDGS+RLCID
Sbjct: 546 PGTVPISKAPYRMALAELRELKEQLQELLDKGFFRPSVSPWGALVLFVKKKDGSMRLCID 605

Query: 136 YRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYG 195
           YR LNKVTIKNKYPLPRIDDLFDQLQGA+VFSKIDLRSGYHQLR+RE DIPKTAFRSRYG
Sbjct: 606 YRKLNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRVREGDIPKTAFRSRYG 665

Query: 196 HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVLT 255
           HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEA HE HLRKVLT
Sbjct: 666 HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAYHEIHLRKVLT 725

[Close]

BLAST of CmoCh00G000580 vs. ExPASy TrEMBL
Match: A0A6J1EV26 (Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111437896 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.1e-108
Identity = 204/242 (84.30%), Postives = 216/242 (89.26%), Query Frame = 0


Query: 14  LKRRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGID 73
           LK R K    GA A LASVT  +     VSSV +V EF DVFPE+L  LPP REVDF ID
Sbjct: 543 LKAR-KMLNQGAWAILASVTKVNKTSLKVSSVPVVGEFEDVFPEELPGLPPNREVDFVID 602

Query: 74  LEPGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLC 133
           LEPGT PISK PYRMAPAEL+ELK QLQ+LLDKGFIRPSVSPWGAPVLFVKKKDG++RLC
Sbjct: 603 LEPGTTPISKVPYRMAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGTMRLC 662

Query: 134 IDYRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSR 193
           IDYR+LNKVTIKNKYPLPRIDDLFDQLQGA+VFSKIDLRSGYHQ+RIREEDIPKTAFRSR
Sbjct: 663 IDYRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQMRIREEDIPKTAFRSR 722

Query: 194 YGHYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKV 253
           YGHYEF+VMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSE EHEGHLR+V
Sbjct: 723 YGHYEFIVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEMEHEGHLRRV 782

Query: 254 LT 256
           LT
Sbjct: 783 LT 783

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BLAST of CmoCh00G000580 vs. ExPASy TrEMBL
Match: A0A5A7THE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00030 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 6.3e-104
Identity = 187/239 (78.24%), Postives = 213/239 (89.12%), Query Frame = 0


Query: 16  RRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLE 75
           R  K    G S  LASV     V+ ++SS  +VR++ DVFPE+L  LPP REV+F I+LE
Sbjct: 666 RASKLLSQGTSGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELE 725

Query: 76  PGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCID 135
           PGT PIS+APYRMAPAEL+ELK QLQ+LLDKGFIRPS+SPWGAPVLFVKKKDGS+RLCID
Sbjct: 726 PGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCID 785

Query: 136 YRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYG 195
           YR+LNKVT+KN+YPLPRIDDLFDQLQGA+VFSKIDLRSGYHQLRI++ED+PKTAFRSRYG
Sbjct: 786 YRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYG 845

Query: 196 HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVL 255
           HYEF+VMSFGLTNAPAVFM+LMNRVF+EFLDTFVIVFIDDIL+YSK+EAEHE HLR VL
Sbjct: 846 HYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL 904

[Close]

BLAST of CmoCh00G000580 vs. ExPASy TrEMBL
Match: A0A5A7TXE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00060 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.8e-103
Identity = 187/239 (78.24%), Postives = 212/239 (88.70%), Query Frame = 0


Query: 16  RRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLE 75
           R  K    G    LASV     V+ ++SS  +VR++ DVFPE+L  LPP REV+F I+LE
Sbjct: 305 RASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELE 364

Query: 76  PGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCID 135
           PGT PIS+APYRMAPAEL+ELK QLQ+LLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCID
Sbjct: 365 PGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID 424

Query: 136 YRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYG 195
           YR+LNKVT+KN+YPLPRIDDLFDQLQGA+VFSKIDLRSGYHQLRI++ED+PKTAFRSRYG
Sbjct: 425 YRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYG 484

Query: 196 HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVL 255
           HYEF+VMSFGLTNAPAVFM+LMNRVF+EFLDTFVIVFIDDIL+YSK+EAEHE HLR VL
Sbjct: 485 HYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL 543

[Close]

BLAST of CmoCh00G000580 vs. NCBI nr
Match: XP_022957288.1 (uncharacterized protein LOC111458730 [Cucurbita moschata])

HSP 1 Score: 447.2 bits (1149), Expect = 1.1e-121
Identity = 223/237 (94.09%), Postives = 227/237 (95.78%), Query Frame = 0


Query: 19  KKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLEPGT 78
           K    GASAFLASVTLDS   QAVSSVHIVREF+DVFPEDL SLPPVREVDFGIDLEPGT
Sbjct: 561 KMIRNGASAFLASVTLDSRNGQAVSSVHIVREFIDVFPEDLPSLPPVREVDFGIDLEPGT 620

Query: 79  APISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRD 138
           APISKAPYRMAPAELRELKEQLQ+LLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYR+
Sbjct: 621 APISKAPYRMAPAELRELKEQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRE 680

Query: 139 LNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYGHYE 198
           LNKVTIKNKYPLPRIDDLFDQLQGA+VFSKIDLRSGYHQLRIREEDIPKT FRSRYGHYE
Sbjct: 681 LNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIREEDIPKTGFRSRYGHYE 740

Query: 199 FLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVLT 256
           FLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSE EHEGHLRKVLT
Sbjct: 741 FLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEVEHEGHLRKVLT 797

[Close]

BLAST of CmoCh00G000580 vs. NCBI nr
Match: XP_022933065.1 (uncharacterized protein LOC111439772 [Cucurbita moschata])

HSP 1 Score: 421.0 bits (1081), Expect = 8.1e-114
Identity = 212/240 (88.33%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 16  RRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLE 75
           R  K    GASAFLASVTLD+S +Q  SSVHI+REFVDVFPEDL  LP +REVDFGIDLE
Sbjct: 486 RAKKLIHSGASAFLASVTLDNSNKQITSSVHIIREFVDVFPEDLPGLPSIREVDFGIDLE 545

Query: 76  PGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCID 135
           PGT PISKAPYRMA AELRELKEQLQ+LLDKGF RPSVSPWGA VLFVKKKDGS+RLCID
Sbjct: 546 PGTVPISKAPYRMALAELRELKEQLQELLDKGFFRPSVSPWGALVLFVKKKDGSMRLCID 605

Query: 136 YRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYG 195
           YR LNKVTIKNKYPLPRIDDLFDQLQGA+VFSKIDLRSGYHQLR+RE DIPKTAFRSRYG
Sbjct: 606 YRKLNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRVREGDIPKTAFRSRYG 665

Query: 196 HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVLT 255
           HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEA HE HLRKVLT
Sbjct: 666 HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAYHEIHLRKVLT 725

[Close]

BLAST of CmoCh00G000580 vs. NCBI nr
Match: XP_022931734.1 (uncharacterized protein LOC111437896 [Cucurbita moschata])

HSP 1 Score: 402.9 bits (1034), Expect = 2.3e-108
Identity = 204/242 (84.30%), Postives = 216/242 (89.26%), Query Frame = 0


Query: 14  LKRRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGID 73
           LK R K    GA A LASVT  +     VSSV +V EF DVFPE+L  LPP REVDF ID
Sbjct: 543 LKAR-KMLNQGAWAILASVTKVNKTSLKVSSVPVVGEFEDVFPEELPGLPPNREVDFVID 602

Query: 74  LEPGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLC 133
           LEPGT PISK PYRMAPAEL+ELK QLQ+LLDKGFIRPSVSPWGAPVLFVKKKDG++RLC
Sbjct: 603 LEPGTTPISKVPYRMAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGTMRLC 662

Query: 134 IDYRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSR 193
           IDYR+LNKVTIKNKYPLPRIDDLFDQLQGA+VFSKIDLRSGYHQ+RIREEDIPKTAFRSR
Sbjct: 663 IDYRELNKVTIKNKYPLPRIDDLFDQLQGATVFSKIDLRSGYHQMRIREEDIPKTAFRSR 722

Query: 194 YGHYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKV 253
           YGHYEF+VMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSE EHEGHLR+V
Sbjct: 723 YGHYEFIVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEMEHEGHLRRV 782

Query: 254 LT 256
           LT
Sbjct: 783 LT 783

[Close]

BLAST of CmoCh00G000580 vs. NCBI nr
Match: KAA0040689.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.1 bits (993), Expect = 1.3e-103
Identity = 187/239 (78.24%), Postives = 213/239 (89.12%), Query Frame = 0


Query: 16  RRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLE 75
           R  K    G S  LASV     V+ ++SS  +VR++ DVFPE+L  LPP REV+F I+LE
Sbjct: 666 RASKLLSQGTSGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELE 725

Query: 76  PGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCID 135
           PGT PIS+APYRMAPAEL+ELK QLQ+LLDKGFIRPS+SPWGAPVLFVKKKDGS+RLCID
Sbjct: 726 PGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCID 785

Query: 136 YRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYG 195
           YR+LNKVT+KN+YPLPRIDDLFDQLQGA+VFSKIDLRSGYHQLRI++ED+PKTAFRSRYG
Sbjct: 786 YRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYG 845

Query: 196 HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVL 255
           HYEF+VMSFGLTNAPAVFM+LMNRVF+EFLDTFVIVFIDDIL+YSK+EAEHE HLR VL
Sbjct: 846 HYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL 904

[Close]

BLAST of CmoCh00G000580 vs. NCBI nr
Match: KAA0046085.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 385.6 bits (989), Expect = 3.8e-103
Identity = 187/239 (78.24%), Postives = 212/239 (88.70%), Query Frame = 0


Query: 16  RRLKKCXGGASAFLASVTLDSSVEQAVSSVHIVREFVDVFPEDLSSLPPVREVDFGIDLE 75
           R  K    G    LASV     V+ ++SS  +VR++ DVFPE+L  LPP REV+F I+LE
Sbjct: 305 RASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELE 364

Query: 76  PGTAPISKAPYRMAPAELRELKEQLQDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCID 135
           PGT PIS+APYRMAPAEL+ELK QLQ+LLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCID
Sbjct: 365 PGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID 424

Query: 136 YRDLNKVTIKNKYPLPRIDDLFDQLQGASVFSKIDLRSGYHQLRIREEDIPKTAFRSRYG 195
           YR+LNKVT+KN+YPLPRIDDLFDQLQGA+VFSKIDLRSGYHQLRI++ED+PKTAFRSRYG
Sbjct: 425 YRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYG 484

Query: 196 HYEFLVMSFGLTNAPAVFMELMNRVFKEFLDTFVIVFIDDILVYSKSEAEHEGHLRKVL 255
           HYEF+VMSFGLTNAPAVFM+LMNRVF+EFLDTFVIVFIDDIL+YSK+EAEHE HLR VL
Sbjct: 485 HYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL 543

The following BLAST results are available for this feature:

BLAST of CmoCh00G000580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.0e-42	43.27	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.0e-42	43.27	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.4e-39	38.10	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.4e-39	38.10	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.4e-39	38.10	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh00G000580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZS7	5.1e-122	94.09	uncharacterized protein LOC111458730 OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]
A0A6J1F3W3	3.9e-114	88.33	uncharacterized protein LOC111439772 OS=Cucurbita moschata OX=3662 GN=LOC1114397...	[more]
A0A6J1EV26	1.1e-108	84.30	Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111437896 PE=4 SV=1	[more]
A0A5A7THE6	6.3e-104	78.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5A7TXE4	1.8e-103	78.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of CmoCh00G000580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957288.1	1.1e-121	94.09	uncharacterized protein LOC111458730 [Cucurbita moschata]	[more]
XP_022933065.1	8.1e-114	88.33	uncharacterized protein LOC111439772 [Cucurbita moschata]	[more]
XP_022931734.1	2.3e-108	84.30	uncharacterized protein LOC111437896 [Cucurbita moschata]	[more]
KAA0040689.1	1.3e-103	78.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046085.1	3.8e-103	78.24	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh00G000580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..105
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 68..207 e-value: 1.8E-81 score: 274.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 47..233
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 47..233
None	No IPR available	CDD	cd01647	RT_LTR	coord: 106..253 e-value: 1.42587E-85 score: 251.746
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 122..255 e-value: 1.0E-22 score: 80.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 103..281 score: 8.527134
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 147..255 e-value: 1.8E-81 score: 274.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 46..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G000580.1	CmoCh00G000580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding