CmoCh00G000480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh00G000480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr00: 7591798 .. 7592352 (+)
RNA-Seq Expression	CmoCh00G000480
Synteny	CmoCh00G000480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGACACCCTTATCCGCAAAACCATAGATCAAACCACGACACAAATTCTTTTTTTGTGGAAAAATAGGAAACAAAATGGAGAATTCAACCACAAAGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCATCCTACACTTTTTCATCGCCATTTTGAGTTATTTCGGATTTAATCACCGTGGACGTTATCGACCAACACCCGATGAACCTGTAAGTCGCTCTTTCTCTTACTGTGTTTTCCTTTTTTTTCTCTTAATTTAAAAAATATGACGAGAGAAAGAAAATGAAGAATTAATATATACATGTTTGTGTTGGGTTTGATAGGAGGAGGAAAGTGAGTACTTTAGAGGGCATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAAGATATTGTAACTAGCATCGCCTCGTTTTAGATCTGTGTAGCAATGTAATATGTATTACAGTGTATGAAGTAGCAAACCAAAATTCCAAGCTTCTCTCTTTCTATAATTTAAAATAATTTATTAA

mRNA sequence

GAGAGACACCCTTATCCGCAAAACCATAGATCAAACCACGACACAAATTCTTTTTTTGTGGAAAAATAGGAAACAAAATGGAGAATTCAACCACAAAGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCATCCTACACTTTTTCATCGCCATTTTGAGTTATTTCGGATTTAATCACCGTGGACGTTATCGACCAACACCCGATGAACCTGAGGAGGAAAGTGAGTACTTTAGAGGGCATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAAGATATTGTAACTAGCATCGCCTCGTTTTAGATCTGTGTAGCAATGTAATATGTATTACAGTGTATGAAGTAGCAAACCAAAATTCCAAGCTTCTCTCTTTCTATAATTTAAAATAATTTATTAA

Coding sequence (CDS)

ATGGAGAATTCAACCACAAAGACCAACAAGCTGACTGATGAACCTGATGTTCATTCTCATTCTACTCTCTGTGATTGCATCCTACACTTTTTCATCGCCATTTTGAGTTATTTCGGATTTAATCACCGTGGACGTTATCGACCAACACCCGATGAACCTGAGGAGGAAAGTGAGTACTTTAGAGGGCATGCTCCTCCTCCACCGCCGTGGAGCACCGGCGGCGGTGGTCAAACCGACTAA

Protein sequence

MENSTTKTNKLTDEPDVHSHSTLCDCILHFFIAILSYFGFNHRGRYRPTPDEPEEESEYFRGHAPPPPPWSTGGGGQTD

Homology

[Close]

BLAST of CmoCh00G000480 vs. ExPASy TrEMBL
Match: A0A5D3D4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00380 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 47/107 (43.93%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 1   MENSTTKTNKLTD-EPDVH--SHS----TLCDCILHFFIAILSYFGFNHRG-RYRPTP-- 60
           M++ST K+ K  D E D+H   H     T+ D IL  FIAIL +FGF      YRP    
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 60

Query: 61  --------------------DEPEEESEYFRGHAPPPPPWSTGGGGQ 78
                               D+ EEESEY+R H PPPPPWSTGGGGQ
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 107

[Close]

BLAST of CmoCh00G000480 vs. ExPASy TrEMBL
Match: A0A1S3CLD8 (uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 47/107 (43.93%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 1   MENSTTKTNKLTD-EPDVH--SHS----TLCDCILHFFIAILSYFGFNHRG-RYRPTP-- 60
           M++ST K+ K  D E D+H   H     T+ D IL  FIAIL +FGF      YRP    
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  --------------------DEPEEESEYFRGHAPPPPPWSTGGGGQ 78
                               D+ EEESEY+R H PPPPPWSTGGGGQ
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]

BLAST of CmoCh00G000480 vs. ExPASy TrEMBL
Match: A0A0A0KBZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.4e-07
Identity = 46/109 (42.20%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 1   MENSTTKTNKLTD-EPDVH--SHS----TLCDCILHFFIAILSYFGFNHRG-RYRPTP-- 60
           M+ ST K+ K  D E D+H   H     T+ D IL  FI+IL +FGF      YRP    
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 61  --------------------DEPEEESEYFRGHAPPPPPWSTGGGGQTD 80
                               D+ EEESEY+R H PP PPWSTGGGGQ D
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of CmoCh00G000480 vs. NCBI nr
Match: KAG7024354.1 (hypothetical protein SDJN02_13168 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 8.2e-40
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MENSTTKTNKLTDEPDVHSHSTLCDCILHFFIAILSYFGFNHRGRYRPTPDEPEEESEYF 60
          MENSTTKTNKLTDEPDVHSHSTLCDCILHFFIAILSYFGFNHRGRYRPTPDEPEEESEYF
Sbjct: 1  MENSTTKTNKLTDEPDVHSHSTLCDCILHFFIAILSYFGFNHRGRYRPTPDEPEEESEYF 60

Query: 61 RGHAPPPPPWSTGGGGQTD 80
          RGHAPPPPPWSTGGGGQTD
Sbjct: 61 RGHAPPPPPWSTGGGGQTD 79

[Close]

BLAST of CmoCh00G000480 vs. NCBI nr
Match: KAG6592221.1 (hypothetical protein SDJN03_14567, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.2 bits (430), Expect = 6.9e-39
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MENSTTKTNKLTDEPDVHSHSTLCDCILHFFIAILSYFGFNHRGRYRPTPDEPEEESEYF 60
          MENSTTKTNKLTDEPDVHSHSTLCDCILHFFIAILSYFGFNH GRYRPTPDEPEEESEYF
Sbjct: 1  MENSTTKTNKLTDEPDVHSHSTLCDCILHFFIAILSYFGFNHCGRYRPTPDEPEEESEYF 60

Query: 61 RGHAPPPPPWSTGGGGQTD 80
          RGHAPPPPPWSTGGGGQTD
Sbjct: 61 RGHAPPPPPWSTGGGGQTD 79

[Close]

BLAST of CmoCh00G000480 vs. NCBI nr
Match: XP_038886557.1 (uncharacterized protein LOC120076731 [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-14
Identity = 49/94 (52.13%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 13  DEPDVHSHS----TLCDCILHFFIAILSYFGFNHRG-RYRPTP----------------- 72
           DE D+HSH      +CD IL  FIAIL + GFNH G  YRP P                 
Sbjct: 15  DETDLHSHCPIFLIICDSILQAFIAILRFLGFNHNGPPYRPAPSSPEDCYTDGSDPPSTA 74

Query: 73  -----DEPEEESEYFRGHAPPPPPWSTGGGGQTD 80
                DE EEESEY+R H PPPPPWSTGGGGQTD
Sbjct: 75  VNPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 108

[Close]

BLAST of CmoCh00G000480 vs. NCBI nr
Match: XP_008464348.1 (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-08
Identity = 47/107 (43.93%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 1   MENSTTKTNKLTD-EPDVH--SHS----TLCDCILHFFIAILSYFGFNHRG-RYRPTP-- 60
           M++ST K+ K  D E D+H   H     T+ D IL  FIAIL +FGF      YRP    
Sbjct: 40  MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 99

Query: 61  --------------------DEPEEESEYFRGHAPPPPPWSTGGGGQ 78
                               D+ EEESEY+R H PPPPPWSTGGGGQ
Sbjct: 100 LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 146

[Close]

BLAST of CmoCh00G000480 vs. NCBI nr
Match: KAA0039201.1 (uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK18468.1 uncharacterized protein E5676_scaffold607G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-08
Identity = 47/107 (43.93%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 1   MENSTTKTNKLTD-EPDVH--SHS----TLCDCILHFFIAILSYFGFNHRG-RYRPTP-- 60
           M++ST K+ K  D E D+H   H     T+ D IL  FIAIL +FGF      YRP    
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 60

Query: 61  --------------------DEPEEESEYFRGHAPPPPPWSTGGGGQ 78
                               D+ EEESEY+R H PPPPPWSTGGGGQ
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQ 107

The following BLAST results are available for this feature:

BLAST of CmoCh00G000480 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh00G000480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4J4	1.8e-08	43.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CLD8	1.8e-08	43.93	uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=...	[more]
A0A0A0KBZ4	4.4e-07	42.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1	[more]

BLAST of CmoCh00G000480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024354.1	8.2e-40	100.00	hypothetical protein SDJN02_13168 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6592221.1	6.9e-39	98.73	hypothetical protein SDJN03_14567, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038886557.1	4.5e-14	52.13	uncharacterized protein LOC120076731 [Benincasa hispida]	[more]
XP_008464348.1	3.7e-08	43.93	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
KAA0039201.1	3.7e-08	43.93	uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of CmoCh00G000480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G000480.1	CmoCh00G000480.1	mRNA