Cmc12g0337831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0337831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr12: 25707419 .. 25708030 (-)
RNA-Seq Expression	Cmc12g0337831
Synteny	Cmc12g0337831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCCCCTCACTTTTTCTTTTCCCCACATCACTATTTTTTCTCAATGCTCATGGCTTCTGTAAGGCTTCTCATCTTTCTCTTCACTTTCGTTTTCCTACGAGGTAATCAAACAACAACGTAGATCATGTACGATTTCGTTTAATAACATTGGCTGCATTATGAATGTATATATGTTGTCGTCTTTGTTTTGAAAATTTGTAGAAGAATCTAAGTAAAAGTATATACATGATAACTTTTTGCTCAGCTGTTATATGTATATGTTACAGCTTTAAATTTATGTGTAGGTGGAGTTGCTGATGGGAGAAGCTATCCGGTTTCAACTCCAGTAGCAGAGTGTAAAGAAATGGAAAAAGATATAATGAAAAAGATGGAAAGAATAAGGGTGAAGGAGGTCGATGGTTGTCGTTCTTCTCCAAGTACAATCGACTCGTCTGATAATCTTTATAAAAAAAAGAAGAAAAGTTTAAATGTAAAGTACAAATGGGTTAACAAAAGTCATGGTGGACATCTACCTAACGACAAAGGTTCGAGATTTATAGCTTTTAATGCGGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGGGGGAAGTATCTCTAA

mRNA sequence

ATGCTTCCCCCTCACTTTTTCTTTTCCCCACATCACTATTTTTTCTCAATGCTCATGGCTTCTGTAAGGCTTCTCATCTTTCTCTTCACTTTCGTTTTCCTACGAGGTGGAGTTGCTGATGGGAGAAGCTATCCGGTTTCAACTCCAGTAGCAGAGTGTAAAGAAATGGAAAAAGATATAATGAAAAAGATGGAAAGAATAAGGGTGAAGGAGGTCGATGGTTGTCGTTCTTCTCCAAGTACAATCGACTCGTCTGATAATCTTTATAAAAAAAAGAAGAAAAGTTTAAATGTAAAGTACAAATGGGTTAACAAAAGTCATGGTGGACATCTACCTAACGACAAAGGTTCGAGATTTATAGCTTTTAATGCGGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGGGGGAAGTATCTCTAA

Coding sequence (CDS)

ATGCTTCCCCCTCACTTTTTCTTTTCCCCACATCACTATTTTTTCTCAATGCTCATGGCTTCTGTAAGGCTTCTCATCTTTCTCTTCACTTTCGTTTTCCTACGAGGTGGAGTTGCTGATGGGAGAAGCTATCCGGTTTCAACTCCAGTAGCAGAGTGTAAAGAAATGGAAAAAGATATAATGAAAAAGATGGAAAGAATAAGGGTGAAGGAGGTCGATGGTTGTCGTTCTTCTCCAAGTACAATCGACTCGTCTGATAATCTTTATAAAAAAAAGAAGAAAAGTTTAAATGTAAAGTACAAATGGGTTAACAAAAGTCATGGTGGACATCTACCTAACGACAAAGGTTCGAGATTTATAGCTTTTAATGCGGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGGGGGAAGTATCTCTAA

Protein sequence

MLPPHFFFSPHHYFFSMLMASVRLLIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCRSSPSTIDSSDNLYKKKKKSLNVKYKWVNKSHGGHLPNDKGSRFIAFNADYFVAKPHPPKNNGGKYL

Homology

[Close]

BLAST of Cmc12g0337831 vs. NCBI nr
Match: TYJ98963.1 (hypothetical protein E5676_scaffold248G001660 [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 17  MLMASVRLLIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCR 76
           MLMASVRLLIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCR
Sbjct: 1   MLMASVRLLIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCR 60

Query: 77  SSPSTIDSSDNLYKKKKKSLNVKYKWVNKSHGGHLPNDKGSRFIAFNADYFVAKPHPPKN 136
           SSPSTIDSSDNLYKKKKKSLNVKYKWVNKSHGGHLPNDKGSRFIAFNADYFVAKPHPPKN
Sbjct: 61  SSPSTIDSSDNLYKKKKKSLNVKYKWVNKSHGGHLPNDKGSRFIAFNADYFVAKPHPPKN 120

Query: 137 NGGKYL 143
           NGGKYL
Sbjct: 121 NGGKYL 126

[Close]

BLAST of Cmc12g0337831 vs. NCBI nr
Match: XP_031736121.1 (uncharacterized protein LOC116401758 [Cucumis sativus] >KGN64086.1 hypothetical protein Csa_014013 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 19  MASVRL-LIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCRS 78
           MAS RL L FLF FV LRGGVADGRSYPVST V   KE ++D+MKKMERIRVKE DGCRS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLG-KETQEDVMKKMERIRVKEQDGCRS 60

Query: 79  SPSTIDSSDNLYKKKKKSLNVKYKWVN---KSHGGHLPNDKGSRFIAFNADYFVAKPHPP 138
           SPST DSSDNLY+ KK+ LNVKYKW+N   KS GGHL ND+GSRFIA+NADYFVAKPHPP
Sbjct: 61  SPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPP 120

Query: 139 KNN-GGKYL 143
           KNN GGKYL
Sbjct: 121 KNNGGGKYL 128

[Close]

BLAST of Cmc12g0337831 vs. NCBI nr
Match: XP_022137288.1 (uncharacterized protein LOC111008786 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-09
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 19  MASV-RLLIFLFTFVFLR-----GGVADGRSYPVSTPVAECKEMEKDIMKKM--ERIRVK 78
           MAS  RL+IFL  F  L      G +A GR+YP        ++  + + K M  E +R  
Sbjct: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60

Query: 79  EVDGCRSSPSTIDSSDNLY-KKKKKSLNVKYKWVNK---SHGGHLPNDKGSRFIAFNADY 138
           + +G   S ST  S+ NL  +K  ++ + K K ++K   +   H  + + S F+ FNADY
Sbjct: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120

Query: 139 FVAKPHPPKNNGGKYL 143
           FVAKPHPPKNNGGK L
Sbjct: 121 FVAKPHPPKNNGGKCL 136

[Close]

BLAST of Cmc12g0337831 vs. ExPASy TrEMBL
Match: A0A5D3BI53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001660 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 17  MLMASVRLLIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCR 76
           MLMASVRLLIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCR
Sbjct: 1   MLMASVRLLIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCR 60

Query: 77  SSPSTIDSSDNLYKKKKKSLNVKYKWVNKSHGGHLPNDKGSRFIAFNADYFVAKPHPPKN 136
           SSPSTIDSSDNLYKKKKKSLNVKYKWVNKSHGGHLPNDKGSRFIAFNADYFVAKPHPPKN
Sbjct: 61  SSPSTIDSSDNLYKKKKKSLNVKYKWVNKSHGGHLPNDKGSRFIAFNADYFVAKPHPPKN 120

Query: 137 NGGKYL 143
           NGGKYL
Sbjct: 121 NGGKYL 126

[Close]

BLAST of Cmc12g0337831 vs. ExPASy TrEMBL
Match: A0A0A0LVN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.6e-45
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 19  MASVRL-LIFLFTFVFLRGGVADGRSYPVSTPVAECKEMEKDIMKKMERIRVKEVDGCRS 78
           MAS RL L FLF FV LRGGVADGRSYPVST V   KE ++D+MKKMERIRVKE DGCRS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLG-KETQEDVMKKMERIRVKEQDGCRS 60

Query: 79  SPSTIDSSDNLYKKKKKSLNVKYKWVN---KSHGGHLPNDKGSRFIAFNADYFVAKPHPP 138
           SPST DSSDNLY+ KK+ LNVKYKW+N   KS GGHL ND+GSRFIA+NADYFVAKPHPP
Sbjct: 61  SPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPP 120

Query: 139 KNN-GGKYL 143
           KNN GGKYL
Sbjct: 121 KNNGGGKYL 128

[Close]

BLAST of Cmc12g0337831 vs. ExPASy TrEMBL
Match: A0A6J1C9X6 (uncharacterized protein LOC111008786 OS=Momordica charantia OX=3673 GN=LOC111008786 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 19  MASV-RLLIFLFTFVFLR-----GGVADGRSYPVSTPVAECKEMEKDIMKKM--ERIRVK 78
           MAS  RL+IFL  F  L      G +A GR+YP        ++  + + K M  E +R  
Sbjct: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60

Query: 79  EVDGCRSSPSTIDSSDNLY-KKKKKSLNVKYKWVNK---SHGGHLPNDKGSRFIAFNADY 138
           + +G   S ST  S+ NL  +K  ++ + K K ++K   +   H  + + S F+ FNADY
Sbjct: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120

Query: 139 FVAKPHPPKNNGGKYL 143
           FVAKPHPPKNNGGK L
Sbjct: 121 FVAKPHPPKNNGGKCL 136

The following BLAST results are available for this feature:

BLAST of Cmc12g0337831 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98963.1	3.5e-65	100.00	hypothetical protein E5676_scaffold248G001660 [Cucumis melo var. makuwa]	[more]
XP_031736121.1	1.2e-44	78.29	uncharacterized protein LOC116401758 [Cucumis sativus] >KGN64086.1 hypothetical ...	[more]
XP_022137288.1	4.6e-09	39.71	uncharacterized protein LOC111008786 [Momordica charantia]	[more]

BLAST of Cmc12g0337831 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc12g0337831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI53	1.7e-65	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LVN9	5.6e-45	78.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1	[more]
A0A6J1C9X6	2.2e-09	39.71	uncharacterized protein LOC111008786 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of Cmc12g0337831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0337831.1	Cmc12g0337831.1	mRNA