Cmc12g0335391 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0335391
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RING-H2 finger protein ATL56-like
Location	CMiso1.1chr12: 24416311 .. 24416718 (+)
RNA-Seq Expression	Cmc12g0335391
Synteny	Cmc12g0335391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATAGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAAGTGATAATAATAATAATAATAGTAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAACAACAAAATGGAGGATTTTGAAATGGAATGTGTGATTTGTTTGGAGAATTTCAAATTGGGGGAAAGATGCAGATTGCTGCCTAATTGTAATCATAGTTTTCATGTTCAATGTATAGATTCTTGGCTTTTGAATAAACCCATTTGCCCAATTTGTAGGACTTTTGCTGCTGTTCTTCCTAAAATTTCATTGATTCAATTGAATTGA

mRNA sequence

ATGGTTATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATAGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAAGTGATAATAATAATAATAATAGTAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAACAACAAAATGGAGGATTTTGAAATGGAATGTGTGATTTGTTTGGAGAATTTCAAATTGGGGGAAAGATGCAGATTGCTGCCTAATTGTAATCATAGTTTTCATGTTCAATGTATAGATTCTTGGCTTTTGAATAAACCCATTTGCCCAATTTGTAGGACTTTTGCTGCTGTTCTTCCTAAAATTTCATTGATTCAATTGAATTGA

Coding sequence (CDS)

ATGGTTATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATAGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAAGTGATAATAATAATAATAATAGTAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAACAACAAAATGGAGGATTTTGAAATGGAATGTGTGATTTGTTTGGAGAATTTCAAATTGGGGGAAAGATGCAGATTGCTGCCTAATTGTAATCATAGTTTTCATGTTCAATGTATAGATTCTTGGCTTTTGAATAAACCCATTTGCCCAATTTGTAGGACTTTTGCTGCTGTTCTTCCTAAAATTTCATTGATTCAATTGAATTGA

Protein sequence

MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCYEYNNKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLIQLN

Homology

[Close]

BLAST of Cmc12g0335391 vs. NCBI nr
Match: XP_004152551.1 (uncharacterized protein LOC101222125 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 8.2e-40
Identity = 100/133 (75.19%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 3   MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKI 62
           MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNN NSYGMKRFSNEDLEKI
Sbjct: 1   MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNN-NSYGMKRFSNEDLEKI 60

Query: 63  PCYEYNNKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRTF 122
           PCYEY+NK+EDFEME                              SWLLNKPICPICRTF
Sbjct: 61  PCYEYSNKLEDFEMEY-----------------------------SWLLNKPICPICRTF 103

Query: 123 AAVLPKISLIQLN 136
           AAVLPKISLIQLN
Sbjct: 121 AAVLPKISLIQLN 103

[Close]

BLAST of Cmc12g0335391 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 92/138 (66.67%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNED 60
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N          SN+D
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKN---------LSNQD 60

Query: 61  LEKIPCYEYNN----KMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKP 120
           LEK+PCYEY +         ++ECV+CLE FK GERCRLLPNC HSFHV+CIDSWLL  P
Sbjct: 61  LEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTP 120

Query: 121 ICPICRTFAAVLPKISLI 133
           ICPICRT AAV PK  L+
Sbjct: 121 ICPICRTCAAV-PKFGLV 128

[Close]

BLAST of Cmc12g0335391 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 3.8e-37
Identity = 91/138 (65.94%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNED 60
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N          SN+D
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKN---------LSNQD 60

Query: 61  LEKIPCYEYNN----KMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKP 120
           LEK+PCYEY +         ++ECV+CLE FK GERCRLLPNC HSFHV+CIDSWLL  P
Sbjct: 61  LEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTP 120

Query: 121 ICPICRTFAAVLPKISLI 133
           ICPICRT  AV+PK  L+
Sbjct: 121 ICPICRT-CAVVPKFGLV 128

[Close]

BLAST of Cmc12g0335391 vs. NCBI nr
Match: XP_010101192.2 (RING-H2 finger protein ATL80 [Morus notabilis])

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-33
Identity = 80/126 (63.49%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDL 60
           MVMEIV+S +LL VGIAVLVVIH+CIVGRA    G   ++NNNNN+N  G  KR S+EDL
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHICIVGRAF-GRGNQGANNNNNNNNILGSNKRMSSEDL 60

Query: 61  EKIPCYEYN--NKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICP 120
           + IPC++YN   + E   ++C +CLENFK G++CRLLP+CNHSFH QCIDSWLL  P+CP
Sbjct: 61  KMIPCFDYNMSGEKESSFVDCAVCLENFKAGDKCRLLPSCNHSFHSQCIDSWLLRTPVCP 120

Query: 121 ICRTFA 124
           ICRT A
Sbjct: 121 ICRTCA 125

[Close]

BLAST of Cmc12g0335391 vs. NCBI nr
Match: EXB87866.1 (RING-H2 finger protein ATL80 [Morus notabilis])

HSP 1 Score: 151.4 bits (381), Expect = 5.7e-33
Identity = 78/124 (62.90%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 3   MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDLEK 62
           MEIV+S +LL VGIAVLVVIH+CIVGRA    G   ++NNNNN+N  G  KR S+EDL+ 
Sbjct: 1   MEIVISVILLFVGIAVLVVIHICIVGRAF-GRGNQGANNNNNNNNILGSNKRMSSEDLKM 60

Query: 63  IPCYEYN--NKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPIC 122
           IPC++YN   + E   ++C +CLENFK G++CRLLP+CNHSFH QCIDSWLL  P+CPIC
Sbjct: 61  IPCFDYNMSGEKESSFVDCAVCLENFKAGDKCRLLPSCNHSFHSQCIDSWLLRTPVCPIC 120

Query: 123 RTFA 124
           RT A
Sbjct: 121 RTCA 123

[Close]

BLAST of Cmc12g0335391 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 37  WRSDNNNNNSNSY---------GMKRFSNEDLEKIPCYEYNNKMEDF--EMECVICLENF 96
           W+  NNNNN+ +          G        ++ I  Y+Y  KM+ F    +C +CL  F
Sbjct: 108 WQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKY-RKMDGFVESSDCSVCLSEF 167

Query: 97  KLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLIQL 135
           +  E  RLLP CNH+FHV CID+WL +   CP+CR F      + ++ L
Sbjct: 168 QENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDL 215

[Close]

BLAST of Cmc12g0335391 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-12
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 55  SNEDLEKIPCYEYNNKMEDFEM-ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNK 114
           S + L K+PCY  +++M   ++  C ICL++ K GE  R LP C+H+FH+ C+D WL+  
Sbjct: 152 SGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRH 211

Query: 115 PICPICR 121
             CPICR
Sbjct: 212 GSCPICR 218

[Close]

BLAST of Cmc12g0335391 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-11
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 12  LVVGIAVLVVIHVCIVG------RALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCY 71
           +V+ +A L+   +C +G        LR    +  + +  ++N+   K      L+ IP  
Sbjct: 41  MVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVD 100

Query: 72  EYNNKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR 121
            Y+ +++    EC+ICL +F  GE  R+LP CNH FHV+CID+WLL+   CP CR
Sbjct: 101 SYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCR 155

[Close]

BLAST of Cmc12g0335391 vs. ExPASy Swiss-Prot
Match: Q9LUL6 (Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKR---FSNE 60
           +++ + ++ V       +  V+  CI+      +     DNNN+   S  +K        
Sbjct: 8   ILIHLGINIVFAFFFFGISAVVVSCIIKCYNTHDDDHDHDNNNDGHVSITIKERVGIKPY 67

Query: 61  DLEKIPCYEYNNKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICP 120
            L  IP  ++N K   + +ECV+CL     G++ R+LP+C+H FHV+CIDSWL +   CP
Sbjct: 68  VLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCP 127

[Close]

BLAST of Cmc12g0335391 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09
Identity = 40/125 (32.00%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNN----SNSYGMKRFSN 60
           +++  ++ A++  + +   +   + I  R   ++ +  + N N N    + + G+K+   
Sbjct: 35  IILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATGLKK--- 94

Query: 61  EDLEKIPCYEYNNKMEDFE-MECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPI 120
           + L++IP   Y + + D +  EC+ICL +F+ GE+ R+LP CNH FHV+CID+WLL++  
Sbjct: 95  QALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSS 154

[Close]

BLAST of Cmc12g0335391 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 92/138 (66.67%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNED 60
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N          SN+D
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKN---------LSNQD 60

Query: 61  LEKIPCYEYNN----KMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKP 120
           LEK+PCYEY +         ++ECV+CLE FK GERCRLLPNC HSFHV+CIDSWLL  P
Sbjct: 61  LEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTP 120

Query: 121 ICPICRTFAAVLPKISLI 133
           ICPICRT AAV PK  L+
Sbjct: 121 ICPICRTCAAV-PKFGLV 128

[Close]

BLAST of Cmc12g0335391 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 91/138 (65.94%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNSNSYGMKRFSNED 60
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N          SN+D
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKN---------LSNQD 60

Query: 61  LEKIPCYEYNN----KMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKP 120
           LEK+PCYEY +         ++ECV+CLE FK GERCRLLPNC HSFHV+CIDSWLL  P
Sbjct: 61  LEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTP 120

Query: 121 ICPICRTFAAVLPKISLI 133
           ICPICRT  AV+PK  L+
Sbjct: 121 ICPICRT-CAVVPKFGLV 128

[Close]

BLAST of Cmc12g0335391 vs. ExPASy TrEMBL
Match: W9RES1 (RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.8e-33
Identity = 78/124 (62.90%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 3   MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGM-KRFSNEDLEK 62
           MEIV+S +LL VGIAVLVVIH+CIVGRA    G   ++NNNNN+N  G  KR S+EDL+ 
Sbjct: 1   MEIVISVILLFVGIAVLVVIHICIVGRAF-GRGNQGANNNNNNNNILGSNKRMSSEDLKM 60

Query: 63  IPCYEYN--NKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPIC 122
           IPC++YN   + E   ++C +CLENFK G++CRLLP+CNHSFH QCIDSWLL  P+CPIC
Sbjct: 61  IPCFDYNMSGEKESSFVDCAVCLENFKAGDKCRLLPSCNHSFHSQCIDSWLLRTPVCPIC 120

Query: 123 RTFA 124
           RT A
Sbjct: 121 RTCA 123

[Close]

BLAST of Cmc12g0335391 vs. ExPASy TrEMBL
Match: A0A059A647 (RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02856 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.8e-32
Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLE 60
           MVMEI++S VLL +GIAVLVVIHVCIVGRA RE G +       NSNS   K  S+EDL+
Sbjct: 1   MVMEIIISVVLLFMGIAVLVVIHVCIVGRAFREGGGFSRGLVQRNSNSAASK-LSSEDLK 60

Query: 61  KIPCYEY--NNKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPI 120
           K+PC+EY   +K  D + +C +CLENFK GE+CRLLPNC H FH QCIDSWLL   ICP+
Sbjct: 61  KLPCFEYGSGDKASDRDEDCAVCLENFKAGEKCRLLPNCKHCFHAQCIDSWLLKTAICPV 120

Query: 121 CRT 122
           CRT
Sbjct: 121 CRT 122

[Close]

BLAST of Cmc12g0335391 vs. ExPASy TrEMBL
Match: A0A5N6RPJ5 (RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019098 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 74/131 (56.49%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 3   MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKI 62
           ME+VVS VLL VGI VLV+IH+CI GRA R        NN     S G KR S  DLE++
Sbjct: 6   MELVVSVVLLFVGIVVLVIIHICIAGRAFRGGNHQIQGNNMVQRGSNGTKRMSTGDLERL 65

Query: 63  PCYEYN-NKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRT 122
           PC++Y   +     ++C +CL+NFK+G++CRLLPNC HSFHVQCIDSWLL  PICPICRT
Sbjct: 66  PCFDYKAAEKGSSSVDCAVCLDNFKMGDKCRLLPNCRHSFHVQCIDSWLLKTPICPICRT 125

Query: 123 FAAVLPKISLI 133
                PKI +I
Sbjct: 126 IVNP-PKIDVI 135

[Close]

BLAST of Cmc12g0335391 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 9.7e-15
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 37  WRSDNNNNNSNSY---------GMKRFSNEDLEKIPCYEYNNKMEDF--EMECVICLENF 96
           W+  NNNNN+ +          G        ++ I  Y+Y  KM+ F    +C +CL  F
Sbjct: 108 WQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKY-RKMDGFVESSDCSVCLSEF 167

Query: 97  KLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICRTFAAVLPKISLIQL 135
           +  E  RLLP CNH+FHV CID+WL +   CP+CR F      + ++ L
Sbjct: 168 QENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDL 215

[Close]

BLAST of Cmc12g0335391 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 55  SNEDLEKIPCYEYNNKMEDFEM-ECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNK 114
           S + L K+PCY  +++M   ++  C ICL++ K GE  R LP C+H+FH+ C+D WL+  
Sbjct: 152 SGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRH 211

Query: 115 PICPICR 121
             CPICR
Sbjct: 212 GSCPICR 218

[Close]

BLAST of Cmc12g0335391 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-12
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 12  LVVGIAVLVVIHVCIVG------RALREEGIWRSDNNNNNSNSYGMKRFSNEDLEKIPCY 71
           +V+ +A L+   +C +G        LR    +  + +  ++N+   K      L+ IP  
Sbjct: 41  MVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVD 100

Query: 72  EYNNKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPICR 121
            Y+ +++    EC+ICL +F  GE  R+LP CNH FHV+CID+WLL+   CP CR
Sbjct: 101 SYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCR 155

[Close]

BLAST of Cmc12g0335391 vs. TAIR 10
Match: AT3G14320.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-11
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNSNSYGMKR---FSNE 60
           +++ + ++ V       +  V+  CI+      +     DNNN+   S  +K        
Sbjct: 8   ILIHLGINIVFAFFFFGISAVVVSCIIKCYNTHDDDHDHDNNNDGHVSITIKERVGIKPY 67

Query: 61  DLEKIPCYEYNNKMEDFEMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICP 120
            L  IP  ++N K   + +ECV+CL     G++ R+LP+C+H FHV+CIDSWL +   CP
Sbjct: 68  VLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCP 127

[Close]

BLAST of Cmc12g0335391 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 40/125 (32.00%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNN----SNSYGMKRFSN 60
           +++  ++ A++  + +   +   + I  R   ++ +  + N N N    + + G+K+   
Sbjct: 35  IILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATGLKK--- 94

Query: 61  EDLEKIPCYEYNNKMEDFE-MECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPI 120
           + L++IP   Y + + D +  EC+ICL +F+ GE+ R+LP CNH FHV+CID+WLL++  
Sbjct: 95  QALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSS 154

The following BLAST results are available for this feature:

BLAST of Cmc12g0335391 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152551.1	8.2e-40	75.19	uncharacterized protein LOC101222125 [Cucumis sativus]	[more]
XP_022994122.1	2.9e-37	66.67	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_022954431.1	3.8e-37	65.94	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
XP_010101192.2	2.0e-33	63.49	RING-H2 finger protein ATL80 [Morus notabilis]	[more]
EXB87866.1	5.7e-33	62.90	RING-H2 finger protein ATL80 [Morus notabilis]	[more]

BLAST of Cmc12g0335391 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRQ8	1.4e-13	35.78	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q8LBA0	2.6e-12	44.78	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
Q9FLC6	6.4e-11	34.78	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LUL6	1.4e-10	32.52	Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 P...	[more]
Q9SG96	2.0e-09	32.00	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]

BLAST of Cmc12g0335391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUU5	1.4e-37	66.67	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A6J1GQW8	1.8e-37	65.94	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
W9RES1	2.8e-33	62.90	RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV...	[more]
A0A059A647	6.8e-32	62.60	RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K0...	[more]
A0A5N6RPJ5	1.7e-30	56.49	RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0190...	[more]

BLAST of Cmc12g0335391 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03550.1	9.7e-15	35.78	RING/U-box superfamily protein	[more]
AT1G74410.1	1.8e-13	44.78	RING/U-box superfamily protein	[more]
AT5G05280.1	4.5e-12	34.78	RING/U-box superfamily protein	[more]
AT3G14320.1	1.0e-11	32.52	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT3G10910.1	1.5e-10	32.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 78..119 e-value: 2.6E-7 score: 40.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 77..120 e-value: 4.4E-13 score: 49.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 78..120 score: 12.267982
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 38..124 e-value: 9.2E-21 score: 75.3
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..124
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..124
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 59..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0335391.1	Cmc12g0335391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane