Cmc12g0334911 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0334911
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
LocationCMiso1.1chr12: 24149292 .. 24150161 (+)
RNA-Seq ExpressionCmc12g0334911
SyntenyCmc12g0334911
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGATTGAATTGGTGATCGTAAACGAATGAACTAAATTTAGAGAGAAGAAGAAGAGTGAAGAAGAAGAAAGTAGAGAACAAAAATCCAAATGTAAGGTCCACAGTGTTCAACTGTAAAAGTACCAAAAATCAAAACCCATCTCTCTCGGACGAAACCCCCCAAATTTTGAGGTTGTGATTGAACCTCATCATAAACAATGGCCCCGCCCCCAGTTTCAATTCCTTAATCCACACACACACACACATACACACACACACACATTATGAAGAAGAAACCAGACCTTCATCAACTCCATGACCACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAACCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACGCCGTCTAGGTTCAAGCTTGAGGCTATTCGGAGCCGGACTAATTCCGTCAGCAATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAAAAGCTAGAGGCGGGTCTGGTGCTCGACGGGGATGGGTTCCGGGAAGCTGAGAGCGGGGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCGAGGAGATTCAATTATTAGGGATTTCAAGTTCGAATTCGAACTGATGAATGGAATGTGAGACTTTGTTGATTATCCAAATTTTGAAACCCAGAGGTTTTGATTTTTCGTGTTTGTTCTTTTTATTGTTTAAGTAATTAAAGTTGCAAACAGATTTCACCAATTCATAGTATTTTAAAATAAAATAATTATGAAAAACTACTCTTAGTTTCTTG

mRNA sequence

GGAAGATTGAATTGGTGATCGTAAACGAATGAACTAAATTTAGAGAGAAGAAGAAGAGTGAAGAAGAAGAAAGTAGAGAACAAAAATCCAAATGTAAGGTCCACAGTGTTCAACTGTAAAAGTACCAAAAATCAAAACCCATCTCTCTCGGACGAAACCCCCCAAATTTTGAGGTTGTGATTGAACCTCATCATAAACAATGGCCCCGCCCCCAGTTTCAATTCCTTAATCCACACACACACACACATACACACACACACACATTATGAAGAAGAAACCAGACCTTCATCAACTCCATGACCACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAACCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACGCCGTCTAGGTTCAAGCTTGAGGCTATTCGGAGCCGGACTAATTCCGTCAGCAATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAAAAGCTAGAGGCGGGTCTGGTGCTCGACGGGGATGGGTTCCGGGAAGCTGAGAGCGGGGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCGAGGAGATTCAATTATTAGGGATTTCAAGTTCGAATTCGAACTGATGAATGGAATGTGAGACTTTGTTGATTATCCAAATTTTGAAACCCAGAGGTTTTGATTTTTCGTGTTTGTTCTTTTTATTGTTTAAGTAATTAAAGTTGCAAACAGATTTCACCAATTCATAGTATTTTAAAATAAAATAATTATGAAAAACTACTCTTAGTTTCTTG

Coding sequence (CDS)

ATGAAGAAGAAACCAGACCTTCATCAACTCCATGACCACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAACCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACGCCGTCTAGGTTCAAGCTTGAGGCTATTCGGAGCCGGACTAATTCCGTCAGCAATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAAAAGCTAGAGGCGGGTCTGGTGCTCGACGGGGATGGGTTCCGGGAAGCTGAGAGCGGGGGTGGGCGGAGTCAGCGGAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCGAGGAGATTCAATTATTAG

Protein sequence

MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Homology
BLAST of Cmc12g0334911 vs. NCBI nr
Match: XP_008438871.1 (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 uncharacterized protein E6C27_scaffold80G001040 [Cucumis melo var. makuwa] >TYJ99185.1 uncharacterized protein E5676_scaffold248G003950 [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 3.8e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60
           MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of Cmc12g0334911 vs. NCBI nr
Match: XP_011651756.1 (uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65
Identity = 129/136 (94.85%), Postives = 134/136 (98.53%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of Cmc12g0334911 vs. NCBI nr
Match: XP_038894267.1 (uncharacterized protein LOC120082919 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-55
Identity = 117/136 (86.03%), Postives = 126/136 (92.65%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60
           MKKKP+L    DH RHLEILKAVAQAWH+HTG+SKPASEFDAHRRNSRPTPSRFKLEAIR
Sbjct: 1   MKKKPELQDDDDH-RHLEILKAVAQAWHSHTGSSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           +R +SVS+RRWDF QSLWDSYEIVTVSKKLEAGLVLD DGFRE + GGGRSQRK+RESCN
Sbjct: 61  TR-SSVSDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDRDGFREVDGGGGRSQRKKRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLF+RASSRRFNY
Sbjct: 121 SLRNLFSRASSRRFNY 134

BLAST of Cmc12g0334911 vs. NCBI nr
Match: KAE8652596.1 (hypothetical protein Csa_014373 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 4.5e-54
Identity = 115/136 (84.56%), Postives = 120/136 (88.24%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKL              ESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKL--------------ESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 122

BLAST of Cmc12g0334911 vs. NCBI nr
Match: XP_023001654.1 (uncharacterized protein LOC111495727 [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-46
Identity = 103/126 (81.75%), Postives = 111/126 (88.10%), Query Frame = 0

Query: 10  LHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSNR 69
           + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIRSR++    R
Sbjct: 7   VEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMR 66

Query: 70  RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCNSLRNLFNRA 129
           RWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREA+ GGGR+QRK+RESCNSLRNLFNR 
Sbjct: 67  RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSLRNLFNR- 126

Query: 130 SSRRFN 136
           +SRRFN
Sbjct: 127 TSRRFN 130

BLAST of Cmc12g0334911 vs. ExPASy TrEMBL
Match: A0A5A7UNW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003950 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60
           MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of Cmc12g0334911 vs. ExPASy TrEMBL
Match: A0A1S3AX17 (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60
           MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of Cmc12g0334911 vs. ExPASy TrEMBL
Match: A0A0A0LTM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 129/136 (94.85%), Postives = 134/136 (98.53%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60
           MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRP PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SRT++VS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN
Sbjct: 61  SRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120

Query: 121 SLRNLFNRASSRRFNY 137
           SLRNLFNRASSRRFNY
Sbjct: 121 SLRNLFNRASSRRFNY 136

BLAST of Cmc12g0334911 vs. ExPASy TrEMBL
Match: A0A6J1KNC1 (uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.3e-46
Identity = 103/126 (81.75%), Postives = 111/126 (88.10%), Query Frame = 0

Query: 10  LHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSNR 69
           + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIRSR++    R
Sbjct: 7   VEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVAGMR 66

Query: 70  RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCNSLRNLFNRA 129
           RWDF QSLWDSYEIV VSKKLEAGLVLDGDGFREA+ GGGR+QRK+RESCNSLRNLFNR 
Sbjct: 67  RWDFGQSLWDSYEIVAVSKKLEAGLVLDGDGFREAD-GGGRNQRKQRESCNSLRNLFNR- 126

Query: 130 SSRRFN 136
           +SRRFN
Sbjct: 127 TSRRFN 130

BLAST of Cmc12g0334911 vs. ExPASy TrEMBL
Match: A0A6J1E7J5 (uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC111431350 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.2e-46
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60
           MK KP    + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIR
Sbjct: 24  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIR 83

Query: 61  SRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESCN 120
           SR++    RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFREA+ GGGR+QRK+RESCN
Sbjct: 84  SRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREAD-GGGRNQRKQRESCN 143

Query: 121 SLRNLFNRASSRRFN 136
           SLRNLFNR +SRRFN
Sbjct: 144 SLRNLFNR-TSRRFN 153

BLAST of Cmc12g0334911 vs. TAIR 10
Match: AT4G24700.1 (unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-19
Identity = 62/144 (43.06%), Postives = 92/144 (63.89%), Query Frame = 0

Query: 1   MKKKPDLHQLHDHD-----RHLEILKAVAQAWHNHTGTSK-PASEFDAHRRNS--RPTPS 60
           M+KK +    ++ +     + LE++KA AQAW +H+ TSK    EFDA R+++  +   S
Sbjct: 1   MRKKREAKDENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKAS 60

Query: 61  RFKLEAIRSRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQ 120
           RFK EA+ S  +  S   W+F QSLWD YEI++VSKKLE  L L+   F  +++ G +  
Sbjct: 61  RFKTEAL-SAKHHPSFLDWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKM 120

Query: 121 RKR--RESCNSLRNLFNRASSRRF 135
           +K+  R+S NSLR+LF R+SS+RF
Sbjct: 121 KKKKTRDSRNSLRSLFTRSSSKRF 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008438871.13.8e-69100.00PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 unc... [more]
XP_011651756.14.4e-6594.85uncharacterized protein LOC105434938 [Cucumis sativus][more]
XP_038894267.15.3e-5586.03uncharacterized protein LOC120082919 [Benincasa hispida][more]
KAE8652596.14.5e-5484.56hypothetical protein Csa_014373 [Cucumis sativus][more]
XP_023001654.12.7e-4681.75uncharacterized protein LOC111495727 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UNW11.8e-69100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AX171.8e-69100.00uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=... [more]
A0A0A0LTM32.1e-6594.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1[more]
A0A6J1KNC11.3e-4681.75uncharacterized protein LOC111495727 OS=Cucurbita maxima OX=3661 GN=LOC111495727... [more]
A0A6J1E7J52.2e-4678.52uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC1114313... [more]
Match NameE-valueIdentityDescription
AT4G24700.12.9e-1943.06unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..54
NoneNo IPR availablePANTHERPTHR34665FAMILY NOT NAMEDcoord: 1..135
NoneNo IPR availablePANTHERPTHR34665:SF1OS02G0595200 PROTEINcoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0334911.1Cmc12g0334911.1mRNA