Cmc12g0328271 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0328271
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
LocationCMiso1.1chr12: 19385120 .. 19385770 (+)
RNA-Seq ExpressionCmc12g0328271
SyntenyCmc12g0328271
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCAGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTATGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCCTAGAAGTTCACTATAATTGACCTTTAGGTACATCGCAGTTAATTCATTGTGTTCCTTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCATGTTTATAA

mRNA sequence

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCAGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTATGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCATGTTTATAA

Coding sequence (CDS)

ATGATACACGAGTCAGATCTTGTGTGTCGGCAAAGCACGCAGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCGCGTCATACAACGAGAATTTGTATGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAACTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAGGAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGCGATTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCATGTTTATAA

Protein sequence

MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGISCL
Homology
[Close]
BLAST of Cmc12g0328271 vs. NCBI nr
Match: KAA0036923.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 6.6e-90
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV SGETVSRHFNIVLLAVLRLYEEL+KRPVPNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 2.5e-89
Identity = 168/172 (97.67%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MI+ESDLVCRQST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. NCBI nr
Match: KAA0062150.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 334.0 bits (855), Expect = 8.1e-88
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVC QST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCLQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKV+VPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIAT+VLGVCDTKGDFVYVLAGWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATDVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. NCBI nr
Match: KAA0042501.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 333.6 bits (854), Expect = 1.1e-87
Identity = 166/172 (96.51%), Postives = 169/172 (98.26%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV S ETVSR+FNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVL GWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.5e-04
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 95  VPNCLGALDGTYIKVNVPAGDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWEGSAA 154
           +PNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+AGW GS  
Sbjct: 180 LPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLN 239

Query: 155 DSRILRDA 161
           D  +L+++
Sbjct: 240 DDVVLKNS 247

[Close]
BLAST of Cmc12g0328271 vs. ExPASy TrEMBL
Match: A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.2e-90
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV SGETVSRHFNIVLLAVLRLYEEL+KRPVPNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 168/172 (97.67%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.0e-89
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MI+ESDLVCRQST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIYESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVP GDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. ExPASy TrEMBL
Match: A0A5A7V4C6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005200 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 3.9e-88
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVC QST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCLQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV SGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKV+VPAGDRPTFR
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIAT+VLGVCDTKGDFVYVLAGWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATDVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. ExPASy TrEMBL
Match: A0A5A7TLQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00550 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.1e-88
Identity = 166/172 (96.51%), Postives = 169/172 (98.26%), Query Frame = 0 

Query: 1   MIHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60
           MIHESDLVCRQST+MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 120
           IQREFV S ETVSR+FNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR
Sbjct: 86  IQREFVRSDETVSRYFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFR 145

Query: 121 TRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           TRKGEIATNVLGVCDTKGDFVYVL GWEGSAADSRILRDAIS+ENGLQVPKG
Sbjct: 146 TRKGEIATNVLGVCDTKGDFVYVLIGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]
BLAST of Cmc12g0328271 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 5.0e-27
Identity = 65/177 (36.72%), Postives = 99/177 (55.93%), Query Frame = 0 

Query: 9   CRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVCS 68
           C ++ +MD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 69  GETVSRHFNIVLLAVLRLYEELIKRPVPN-------------CLGALDGTYIKVNVPAGD 128
           GET+SRHFN VL AV+ + ++   +P  N             C+G +D  +I V V   +
Sbjct: 102 GETISRHFNNVLNAVIAISKDFF-QPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDE 161

Query: 129 RPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 173
           +  FR   G +  NVL        F YVLAGWEGSA+D ++L  A+++ N LQVP+G
Sbjct: 162 QGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQG 217

[Close]
BLAST of Cmc12g0328271 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-15
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0 

Query: 97  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 156
           +C+GA+D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 157 LRDAISQ-ENGLQVPK 172
           L DA+++  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

[Close]
BLAST of Cmc12g0328271 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-15
Identity = 53/190 (27.89%), Postives = 84/190 (44.21%), Query Frame = 0 

Query: 2   IHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           + +    C Q  +M    F  LC++L+    L  T  + +EE VAMFL +  H+   R +
Sbjct: 59  LQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDV 118

Query: 62  QREFVCSGETVSRHFNIVLLAVLRLYEELIKRP-------VPNCL--------------G 121
              F  + ETV R F  VL A   L  + I+ P       +P  L              G
Sbjct: 119 GLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVG 178

Query: 122 ALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA 171
           A+DGT++ V V    +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A
Sbjct: 179 AMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIA 238

[Close]
BLAST of Cmc12g0328271 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-14
Identity = 52/169 (30.77%), Postives = 79/169 (46.75%), Query Frame = 0 

Query: 2   IHESDLVCRQSTQMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 61
           I+ +++ C+   +M    F  LC +L    GL S+  + ++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFVCSGETVSRHFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRT 121
              F  + ET+ R F+ VL A+ RL  E I+   P  +  L     ++       P    
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR---PRKVEELRAISNRLQDDTRYWPFLMD 136

Query: 122 RKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVP 171
             G  + NVL +CD    F Y   G  GS  D+R+L  AIS +    VP
Sbjct: 137 LLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVP 182

[Close]
BLAST of Cmc12g0328271 vs. TAIR 10
Match: AT3G55350.1 (PIF / Ping-Pong family of plant transposases )

HSP 1 Score: 45.4 bits (106), Expect = 5.3e-05
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 95  VPNCLGALDGTYIKVNVPAGDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWEGSAA 154
           +PNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+AGW GS  
Sbjct: 180 LPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLN 239

Query: 155 DSRILRDA 161
           D  +L+++
Sbjct: 240 DDVVLKNS 247

The following BLAST results are available for this feature:
BLAST of Cmc12g0328271 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036923.16.6e-9098.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062587.12.5e-8997.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051443.11.2e-8897.09retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062150.18.1e-8896.51retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0042501.11.1e-8796.51retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Cmc12g0328271 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2U37.5e-0435.29Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1[more]
BLAST of Cmc12g0328271 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T1V53.2e-9098.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V6J91.2e-8997.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U6C16.0e-8997.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V4C63.9e-8896.51Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TLQ05.1e-8896.51Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Cmc12g0328271 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41980.15.0e-2736.72CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT5G28950.12.0e-1547.37unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G43722.17.4e-1527.89unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G28730.13.7e-1430.77unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G55350.15.3e-0535.29PIF / Ping-Pong family of plant transposases [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 102..160
e-value: 8.4E-8
score: 32.0
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 1..168
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0328271.1Cmc12g0328271.1mRNA