Cmc12g0327021 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0327021
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr12: 17806035 .. 17806493 (-)
RNA-Seq Expression	Cmc12g0327021
Synteny	Cmc12g0327021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTTAATGATTTCTACTAGGCCTGACCTATCTTATTCATCTAGTTTAATAAGCAGGTACATGGCTAACCCAGACAAAAGACATTGGGAAGCAGCCAAATGGGTCCTTAGGTACCTAAAGGGATCTATGAATGCTCAATTAATGTATAAAATATGTCCTAAAGAATTGTTTGAGCTTTATGGATTTGTAGACTCTGACTATGCAGGGGATTTAGACAAGAGAAGGTCACTAATAGGATATTGTTTCCTAATTGGAGGCAACCTCTTAAGCTGGAAAGCTTCACTACAACCTATGGTAGCCCTAGCATCTACTGAAGATGAATATATAGCTCTTTCAGAAGCTATCAAAGAAGCTATTTGGTTAAAAGGATTCTTAAAGGACTTTGGCATATCACAAAAATTTGTAAAGATTTATTGTGATAATCAAAGTACCATTCATTTGTCCAAAAACCAATAA

mRNA sequence

ATGTACTTAATGATTTCTACTAGGCCTGACCTATCTTATTCATCTAGTTTAATAAGCAGGTACATGGCTAACCCAGACAAAAGACATTGGGAAGCAGCCAAATGGGTCCTTAGGTACCTAAAGGGATCTATGAATGCTCAATTAATGTATAAAATATGTCCTAAAGAATTGTTTGAGCTTTATGGATTTGTAGACTCTGACTATGCAGGGGATTTAGACAAGAGAAGGTCACTAATAGGATATTGTTTCCTAATTGGAGGCAACCTCTTAAGCTGGAAAGCTTCACTACAACCTATGGTAGCCCTAGCATCTACTGAAGATGAATATATAGCTCTTTCAGAAGCTATCAAAGAAGCTATTTGGTTAAAAGGATTCTTAAAGGACTTTGGCATATCACAAAAATTTGTAAAGATTTATTGTGATAATCAAAGTACCATTCATTTGTCCAAAAACCAATAA

Coding sequence (CDS)

ATGTACTTAATGATTTCTACTAGGCCTGACCTATCTTATTCATCTAGTTTAATAAGCAGGTACATGGCTAACCCAGACAAAAGACATTGGGAAGCAGCCAAATGGGTCCTTAGGTACCTAAAGGGATCTATGAATGCTCAATTAATGTATAAAATATGTCCTAAAGAATTGTTTGAGCTTTATGGATTTGTAGACTCTGACTATGCAGGGGATTTAGACAAGAGAAGGTCACTAATAGGATATTGTTTCCTAATTGGAGGCAACCTCTTAAGCTGGAAAGCTTCACTACAACCTATGGTAGCCCTAGCATCTACTGAAGATGAATATATAGCTCTTTCAGAAGCTATCAAAGAAGCTATTTGGTTAAAAGGATTCTTAAAGGACTTTGGCATATCACAAAAATTTGTAAAGATTTATTGTGATAATCAAAGTACCATTCATTTGTCCAAAAACCAATAA

Protein sequence

MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFELYGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAIWLKGFLKDFGISQKFVKIYCDNQSTIHLSKNQ

Homology

[Close]

BLAST of Cmc12g0327021 vs. NCBI nr
Match: XP_038877926.1 (secreted RxLR effector protein 161-like [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 6.4e-49
Identity = 97/142 (68.31%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
           MYLMISTRPDLSYS+SL+SRYM+NP K HW+A KW+LRYL    N++L+Y+   K   EL
Sbjct: 110 MYLMISTRPDLSYSTSLVSRYMSNPGKIHWKATKWILRYLIWFKNSKLVYQRSIKPNLEL 169

Query: 61  YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
           YG++D+DYAGDLDKRRSL  Y FL G NL+SWKASLQP+VAL++TE EY+ L EAIKEA+
Sbjct: 170 YGYMDADYAGDLDKRRSLTSYLFLFGPNLISWKASLQPIVALSTTEAEYMTLIEAIKEAL 229

Query: 121 WLKGFLKDFGISQKFVKIYCDN 143
           WLKG LKDF I Q  VK+YCDN
Sbjct: 230 WLKGLLKDFEIDQTVVKLYCDN 251

[Close]

BLAST of Cmc12g0327021 vs. NCBI nr
Match: KAA0046926.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-46
Identity = 89/152 (58.55%), Postives = 117/152 (76.97%), Query Frame = 0


Query: 1   MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
           MYL++ TRPDL++ SS++SRYM NP + HWEA KWV  YLKG  N  L+YK        L
Sbjct: 45  MYLIVCTRPDLAHYSSIVSRYMGNPGRAHWEATKWVFLYLKGLSNRGLLYKHLKSIELNL 104

Query: 61  YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
           YG+VDSDYAGDLDKRRSLIG+ F++GGN++SWK++LQP+V L++ E E IA++EA+KE I
Sbjct: 105 YGYVDSDYAGDLDKRRSLIGFTFVLGGNVISWKSNLQPVVTLSTLEAESIAMTEAVKETI 164

Query: 121 WLKGFLKDFGISQKFVKIYCDNQSTIHLSKNQ 153
           WLKG L++ G  Q+ + I C +Q+ IHLSKNQ
Sbjct: 165 WLKGILEELGFYQRSINITCHSQNAIHLSKNQ 196

[Close]

BLAST of Cmc12g0327021 vs. NCBI nr
Match: TYK03226.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.7e-46
Identity = 89/152 (58.55%), Postives = 117/152 (76.97%), Query Frame = 0


Query: 1   MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
           MYL++ TRPDL++ SS++SRYM NP + HWEA KWV  YLKG  N  L+YK        L
Sbjct: 45  MYLIVCTRPDLAHYSSIVSRYMGNPGRAHWEATKWVFLYLKGLSNRGLLYKHLKSIELNL 104

Query: 61  YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
           YG+VDSDYAGDLDKRRSLIG+ F++GGN++SWK++LQP+V L++ E E IA++EA+KE I
Sbjct: 105 YGYVDSDYAGDLDKRRSLIGFTFVLGGNVISWKSNLQPVVTLSTLEAESIAMTEAVKETI 164

Query: 121 WLKGFLKDFGISQKFVKIYCDNQSTIHLSKNQ 153
           WLKG L++ G  Q+ + I C +Q+ IHLSKNQ
Sbjct: 165 WLKGILEELGFYQRSINITCHSQNAIHLSKNQ 196

[Close]

BLAST of Cmc12g0327021 vs. NCBI nr
Match: KAG7636186.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-44
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 1    MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
            MY MI TRPDL+Y+  L+SRYM+ P   HWEA KW+LRYLKGS +  L++    ++ F +
Sbjct: 1596 MYAMIGTRPDLAYAICLVSRYMSRPGSLHWEAVKWILRYLKGSQDLSLVF--TKEKEFRV 1655

Query: 61   YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
             G+ DSD+A DLDKRRS+ GY F +GGN +SWKA+LQP+VA++STE EYIAL+EA KEAI
Sbjct: 1656 AGYCDSDHAADLDKRRSISGYMFTVGGNTVSWKANLQPVVAVSSTEAEYIALAEATKEAI 1715

Query: 121  WLKGFLKDFGISQKFVKIYCDNQSTIHLSKN 152
            W+KG LKD G  Q+   I+CD+QS I LSKN
Sbjct: 1716 WIKGLLKDMGCEQEKACIWCDSQSAICLSKN 1744

[Close]

BLAST of Cmc12g0327021 vs. NCBI nr
Match: KAG7532793.1 (Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 189.1 bits (479), Expect = 2.8e-44
Identity = 87/151 (57.62%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 1    MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
            MY MI TRPDL+Y   +ISR+M+NP K HW A KWVLRY+KG+++ +L Y+  P   F++
Sbjct: 1145 MYAMIGTRPDLAYPVGVISRFMSNPIKEHWLAVKWVLRYIKGTLDIKLCYQKNPD--FQI 1204

Query: 61   YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
             G+ D+D+  DLDKRRS+ G  F +GGN +SWK+ LQ +VAL+STE EY++L+EA+KEAI
Sbjct: 1205 TGYCDADHGADLDKRRSITGLVFTLGGNTISWKSGLQRVVALSSTESEYMSLTEAVKEAI 1264

Query: 121  WLKGFLKDFGISQKFVKIYCDNQSTIHLSKN 152
            WLKG L++FG  QK V+IYCD+QS I +SKN
Sbjct: 1265 WLKGLLREFGYDQKAVEIYCDSQSAIEVSKN 1293

[Close]

BLAST of Cmc12g0327021 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.6e-37
Identity = 73/151 (48.34%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 1    MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
            MY M+ TRPD++++  ++SR++ NP K HWEA KW+LRYL+G+    L +         L
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDP---IL 1178

Query: 61   YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
             G+ D+D AGD+D R+S  GY F   G  +SW++ LQ  VAL++TE EYIA +E  KE I
Sbjct: 1179 KGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMI 1238

Query: 121  WLKGFLKDFGISQKFVKIYCDNQSTIHLSKN 152
            WLK FL++ G+ QK   +YCD+QS I LSKN
Sbjct: 1239 WLKRFLQELGLHQKEYVVYCDSQSAIDLSKN 1266

[Close]

BLAST of Cmc12g0327021 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-26
Identity = 64/153 (41.83%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 1    MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
            MY+M+ TRPDL+ + +++SRY +  +   W+  K VLRYLKG+++ +L++K       ++
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248

Query: 61   YGFVDSDYAGDLDKRRSLIGYCF-LIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEA 120
             G+VDSD+AG    R+S  GY F +   NL+ W    Q  VA +STE EY+AL EA++EA
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308

Query: 121  IWLKGFLKDFGIS-QKFVKIYCDNQSTIHLSKN 152
            +WLK  L    I  +  +KIY DNQ  I ++ N
Sbjct: 1309 LWLKFLLTSINIKLENPIKIYEDNQGCISIANN 1341

[Close]

BLAST of Cmc12g0327021 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.7e-25
Identity = 56/122 (45.90%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
           MYLM+ TRPDL+ +  ++S++ ++P   HW+A K VLRYL+ +    L +        +L
Sbjct: 14  MYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTA--KL 73

Query: 61  YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
            G+ D+D+AGD++ RRS  GY F + G  +SW++  Q  VAL+STEDEY+ALSEA +EA+
Sbjct: 74  VGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAV 133

Query: 121 WL 123
           WL
Sbjct: 134 WL 133

[Close]

BLAST of Cmc12g0327021 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-19
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 0


Query: 7    TRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFELYGFVDS 66
            TRPDLSY+ + +S+YM  P   HW A K VLRYL G+ +  +  K        L+ + D+
Sbjct: 1241 TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLK--KGNTLSLHAYSDA 1300

Query: 67   DYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAIWLKGFL 126
            D+AGD D   S  GY   +G + +SW +  Q  V  +STE EY +++    E  W+   L
Sbjct: 1301 DWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLL 1360

Query: 127  KDFGISQKFVK-IYCDNQSTIHLSKN 152
             + GI       IYCDN    +L  N
Sbjct: 1361 TELGIQLSHPPVIYCDNVGATYLCAN 1384

[Close]

BLAST of Cmc12g0327021 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-17
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 7    TRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFELYGFVDS 66
            TRPD+SY+ + +S++M  P + H +A K +LRYL G+ N  +  K        L+ + D+
Sbjct: 1258 TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLK--KGNTLSLHAYSDA 1317

Query: 67   DYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAIWLKGFL 126
            D+AGD D   S  GY   +G + +SW +  Q  V  +STE EY +++    E  W+   L
Sbjct: 1318 DWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLL 1377

Query: 127  KDFGIS-QKFVKIYCDNQSTIHLSKN 152
             + GI   +   IYCDN    +L  N
Sbjct: 1378 TELGIRLTRPPVIYCDNVGATYLCAN 1401

[Close]

BLAST of Cmc12g0327021 vs. ExPASy TrEMBL
Match: A0A5D3BYG1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00390 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47
Identity = 89/152 (58.55%), Postives = 117/152 (76.97%), Query Frame = 0


Query: 1   MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
           MYL++ TRPDL++ SS++SRYM NP + HWEA KWV  YLKG  N  L+YK        L
Sbjct: 45  MYLIVCTRPDLAHYSSIVSRYMGNPGRAHWEATKWVFLYLKGLSNRGLLYKHLKSIELNL 104

Query: 61  YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
           YG+VDSDYAGDLDKRRSLIG+ F++GGN++SWK++LQP+V L++ E E IA++EA+KE I
Sbjct: 105 YGYVDSDYAGDLDKRRSLIGFTFVLGGNVISWKSNLQPVVTLSTLEAESIAMTEAVKETI 164

Query: 121 WLKGFLKDFGISQKFVKIYCDNQSTIHLSKNQ 153
           WLKG L++ G  Q+ + I C +Q+ IHLSKNQ
Sbjct: 165 WLKGILEELGFYQRSINITCHSQNAIHLSKNQ 196

[Close]

BLAST of Cmc12g0327021 vs. ExPASy TrEMBL
Match: A0A5A7TY71 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00940 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.4e-47
Identity = 89/152 (58.55%), Postives = 117/152 (76.97%), Query Frame = 0


Query: 1   MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
           MYL++ TRPDL++ SS++SRYM NP + HWEA KWV  YLKG  N  L+YK        L
Sbjct: 45  MYLIVCTRPDLAHYSSIVSRYMGNPGRAHWEATKWVFLYLKGLSNRGLLYKHLKSIELNL 104

Query: 61  YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
           YG+VDSDYAGDLDKRRSLIG+ F++GGN++SWK++LQP+V L++ E E IA++EA+KE I
Sbjct: 105 YGYVDSDYAGDLDKRRSLIGFTFVLGGNVISWKSNLQPVVTLSTLEAESIAMTEAVKETI 164

Query: 121 WLKGFLKDFGISQKFVKIYCDNQSTIHLSKNQ 153
           WLKG L++ G  Q+ + I C +Q+ IHLSKNQ
Sbjct: 165 WLKGILEELGFYQRSINITCHSQNAIHLSKNQ 196

[Close]

BLAST of Cmc12g0327021 vs. ExPASy TrEMBL
Match: A0A6A3A9V0 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110556pilonHSYRG00215 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44
Identity = 85/152 (55.92%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 1    MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
            MY M+ +RPDL+Y+ S+ISR+MANP K HWEA KW LRYL+G+    LM+K    E  ++
Sbjct: 1188 MYGMVCSRPDLAYAVSIISRFMANPGKAHWEALKWTLRYLRGTTELGLMFKKQENEREKV 1247

Query: 61   YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
             G+VDSDYAG +D R+SL G+ F + G  +SWK++LQ +VAL++TE EYIA++EAIKEA+
Sbjct: 1248 VGYVDSDYAGSIDTRKSLTGFIFTVFGTAVSWKSNLQSVVALSTTEAEYIAVTEAIKEAM 1307

Query: 121  WLKGFLKDFGISQKFVKIYCDNQSTIHLSKNQ 153
            WL+G +++ GI QK + ++CDNQSTIHL++NQ
Sbjct: 1308 WLQGMVEELGIQQKVLTVFCDNQSTIHLTRNQ 1339

[Close]

BLAST of Cmc12g0327021 vs. ExPASy TrEMBL
Match: A0A6D2K295 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS29518 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44
Identity = 85/151 (56.29%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 1   MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
           MY MI +RPDL+Y   L+SR+M+ P   HWEA KW+LRY+KGS++ +L+Y     +  ++
Sbjct: 98  MYAMIGSRPDLAYGIGLVSRFMSKPGSIHWEAVKWLLRYIKGSLDVELLY--TKDKNLDI 157

Query: 61  YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
            G+ DSDYA DLDKRRS+ GY F +GGN++SWK++LQ + AL++TE EYIAL+EA+KE I
Sbjct: 158 QGYCDSDYAADLDKRRSISGYVFTVGGNVVSWKSNLQRVAALSTTEAEYIALTEAVKEGI 217

Query: 121 WLKGFLKDFGISQKFVKIYCDNQSTIHLSKN 152
           WL+G L+DFG  Q+ VK++CD+QS I LSKN
Sbjct: 218 WLRGLLQDFGFKQEAVKVWCDSQSAICLSKN 246

[Close]

BLAST of Cmc12g0327021 vs. ExPASy TrEMBL
Match: Q9SHR5 (F28L22.3 protein OS=Arabidopsis thaliana OX=3702 GN=F28L22.3 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44
Identity = 89/151 (58.94%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 1    MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
            MY M+ TRPDL+Y+  LISRYM+ P   HWEA KWV+RYLKG+ +  L++    ++ F +
Sbjct: 1145 MYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVF--TKEKDFTV 1204

Query: 61   YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
             G+ DS+YA DLD+RRS+ GY F IGGN +SWKASLQP+VA+++TE EYIAL+EA KEA+
Sbjct: 1205 TGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAM 1264

Query: 121  WLKGFLKDFGISQKFVKIYCDNQSTIHLSKN 152
            W+KG L+D G+ Q  VKI+CD+QS I LSKN
Sbjct: 1265 WIKGLLQDMGMQQDKVKIWCDSQSAICLSKN 1293

[Close]

BLAST of Cmc12g0327021 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 1   MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
           MYL I TR D+S++ + +S++   P   H +A   +L Y+KG++   L Y    +   +L
Sbjct: 386 MYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS--SQAEMQL 445

Query: 61  YGFVDSDYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAI 120
             F D+ +    D RRS  GYC  +G +L+SWK+  Q +V+ +S E EY ALS A  E +
Sbjct: 446 QVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMM 505

Query: 121 WLKGFLKDFGIS-QKFVKIYCDNQSTIHLSKN 152
           WL  F ++  +   K   ++CDN + IH++ N
Sbjct: 506 WLAQFFRELQLPLSKPTLLFCDNTAAIHIATN 534

[Close]

BLAST of Cmc12g0327021 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 5.3e-17
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 7   TRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFELYGFVDS 66
           TRPD+SY+ +++ + M  P    ++  K VLRY+KG++   L   I       +  F DS
Sbjct: 113 TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLY--IHKNSKLNVQAFCDS 172

Query: 67  DYAGDLDKRRSLIGYCFLIGGNLLSWKASLQPMVALASTEDEYIALSEAIKEAIW 122
           D+AG    RRS  G+C  +G N++SW A  QP V+ +STE EY AL+    E  W
Sbjct: 173 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc12g0327021 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1  MYLMISTRPDLSYSSSLISRYMANPDKRHWEAAKWVLRYLKGSMNAQLMYKICPKELFEL 60
          MYL I TRPDL+++ + +S++ +       +A   VL Y+KG++   L Y        +L
Sbjct: 1  MYLTI-TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSD--LQL 60

Query: 61 YGFVDSDYAGDLDKRRSLIGYCFLI 86
            F DSD+A   D RRS+ G+C L+
Sbjct: 61 KAFADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc12g0327021 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877926.1	6.4e-49	68.31	secreted RxLR effector protein 161-like [Benincasa hispida]	[more]
KAA0046926.1	1.7e-46	58.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK03226.1	1.7e-46	58.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAG7636186.1	2.1e-44	59.60	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7532793.1	2.8e-44	57.62	Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis thaliana x Arabi...	[more]

BLAST of Cmc12g0327021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.6e-37	48.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.6e-26	41.83	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	8.7e-25	45.90	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	4.2e-19	36.99	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.0e-17	34.93	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc12g0327021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYG1	8.4e-47	58.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TY71	8.4e-47	58.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6A3A9V0	1.8e-44	55.92	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110556pilon...	[more]
A0A6D2K295	1.8e-44	56.29	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Microthlaspi e...	[more]
Q9SHR5	1.8e-44	58.94	F28L22.3 protein OS=Arabidopsis thaliana OX=3702 GN=F28L22.3 PE=4 SV=1	[more]

BLAST of Cmc12g0327021 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.0e-20	35.53	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.3e-17	39.13	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.3e-07	36.47	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 3..86
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..86
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 61..152 e-value: 9.1374E-48 score: 149.156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0327021.1	Cmc12g0327021.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding