Cmc12g0326961 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0326961
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr12: 17780051 .. 17780848 (+)
RNA-Seq Expression	Cmc12g0326961
Synteny	Cmc12g0326961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTCAAGGTTGGAACGAGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCAGCTAAGCTTGAAGACAACTTGTATGTATTAAGACCTAATGAAGCAAAAACAGTTTTAAATCATGAGGTGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAATAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGGTCAGGAGATTGGTAAAGAATGGACGTCTAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGTAAAATGACAAAGAGACCTTTTACTAGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATTCATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGCTTTAAATACTTGATCTCTTTTATAGACGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGAATTTGAGATTCCAAGACTATATGATAGAACATGGAATCCAATCCTAA

mRNA sequence

ATGACACTCAAGGTTGGAACGAGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCAGCTAAGCTTGAAGACAACTTGTATGTATTAAGACCTAATGAAGCAAAAACAGTTTTAAATCATGAGGTGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAATAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGGTCAGGAGATTGGTAAAGAATGGACGTCTAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGTAAAATGACAAAGAGACCTTTTACTAGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATTCATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGCTTTAAATACTTGATCTCTTTTATAGACGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGAATTTGAGATTCCAAGACTATATGATAGAACATGGAATCCAATCCTAA

Coding sequence (CDS)

ATGACACTCAAGGTTGGAACGAGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCAGCTAAGCTTGAAGACAACTTGTATGTATTAAGACCTAATGAAGCAAAAACAGTTTTAAATCATGAGGTGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAATAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGGTCAGGAGATTGGTAAAGAATGGACGTCTAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGTAAAATGACAAAGAGACCTTTTACTAGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATTCATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGCTTTAAATACTTGATCTCTTTTATAGACGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGAATTTGAGATTCCAAGACTATATGATAGAACATGGAATCCAATCCTAA

Protein sequence

MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWHLRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHSDLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMNLRFQDYMIEHGIQS

Homology

[Close]

BLAST of Cmc12g0326961 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 506.5 bits (1303), Expect = 1.4e-139
Identity = 250/265 (94.34%), Postives = 256/265 (96.60%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           NEAFI KNGVHICSAKLE+NLYVLRPNEAK VLNHE+FRTANTQNKRQ ISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRLGHINLDR+ RLVKNG LNKL+D SLPPCESCLEGKMTKRPFT KGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGF+Y ISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
           LRSDRGGEYM+LRFQDYMIEHGIQS
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQS 497

[Close]

BLAST of Cmc12g0326961 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 497.7 bits (1280), Expect = 6.4e-137
Identity = 246/265 (92.83%), Postives = 253/265 (95.47%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           NEAFI KNGVHICSAKLE+NLYVLRPNEAK VLNHE+FRTANTQNKRQ ISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRLGHINLDR+ RLVK+G LNKL+D SLPPCESCLEGKMTKRPFT KGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARG F+Y ISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
            RSDRGGEYM+L FQDYMIEHGIQS
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQS 497

[Close]

BLAST of Cmc12g0326961 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.3e-137
Identity = 245/265 (92.45%), Postives = 252/265 (95.09%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           NEAFISKNGVHICS KLEDNLYVL+PNE K VLNHE+FRTANTQNKRQ IS NNNTYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRLGHINLDR+ RLVKNG LNKLEDDSLPPCESCLEGKMTKRPFT KGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKA GGF+Y ISFIDDYS YGYLYL+EHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
           LRSDRGGEYM+LRFQDYMIEHGIQS
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQS 469

[Close]

BLAST of Cmc12g0326961 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 479.6 bits (1233), Expect = 1.8e-131
Identity = 241/265 (90.94%), Postives = 246/265 (92.83%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VGT DVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           NEAFISKNG     AKLEDNLYVLRPNEAK VLNHE+FRTANTQNKRQ ISPNNNTYLWH
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRL HINLDR+ RLVKNG LNKL+DDSLPPCESCLEGKMTKRPFT K YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGF+Y ISFIDDYSRYGYLYLMEHK EALEKFKEYKTEVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
           LRSDRGGEYM+LRFQDYMIEHGIQS
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQS 467

[Close]

BLAST of Cmc12g0326961 vs. NCBI nr
Match: KAA0046415.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 4.6e-103
Identity = 186/265 (70.19%), Postives = 222/265 (83.77%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MT++VGT  VISA AVG  +L     F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336 MTMRVGTGHVISAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           N+ FI KNGV ICSAKLE+NLYVLR   +K +LN E+F+TA TQNKR  ISP  N +LWH
Sbjct: 396 NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRLGHINL+R+ RLVKNG L++LE++SLP CESCLEGKMTKRPFT KG+RAKEPLEL+HS
Sbjct: 456 LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGF+Y I+F DDYSRYGY+YLM+HKSEALEKFKEYK EVEN LSK IK 
Sbjct: 516 DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
            RSDRGGEYM+L+FQ+Y++E GI S
Sbjct: 576 FRSDRGGEYMDLKFQNYLMECGIVS 600

[Close]

BLAST of Cmc12g0326961 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-27
Identity = 75/264 (28.41%), Postives = 131/264 (49.62%), Query Frame = 0


Query: 2   TLKVGTRDVISARAVGDAKLFFG-NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 61
           T+K+G         +GD  +       + L+++  VP ++ NL+S   L    Y   F+ 
Sbjct: 321 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 380

Query: 62  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 121
            +  ++K  + I        LY           N E+      Q +        +  LWH
Sbjct: 381 QKWRLTKGSLVIAKGVARGTLY---------RTNAEI-----CQGELNAAQDEISVDLWH 440

Query: 122 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 181
            R+GH++   ++ L K   ++  +  ++ PC+ CL GK  +  F     R    L+L++S
Sbjct: 441 KRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYS 500

Query: 182 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 241
           D+CGPM +++ GG KY ++FIDD SR  ++Y+++ K +  + F+++   VE    +K+K 
Sbjct: 501 DVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKR 560

Query: 242 LRSDRGGEYMNLRFQDYMIEHGIQ 265
           LRSD GGEY +  F++Y   HGI+
Sbjct: 561 LRSDNGGEYTSREFEEYCSSHGIR 570

[Close]

BLAST of Cmc12g0326961 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 99.4 bits (246), Expect = 6.6e-20
Identity = 71/243 (29.22%), Postives = 117/243 (48.15%), Query Frame = 0


Query: 30  LENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHIC-SAKLEDNLYVLRPNE 89
           LE++    +   NL+SV  L E   SI F  +   ISKNG+ +  ++ + +N+       
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNV------- 404

Query: 90  AKTVLNHEVFRTANTQNKRQIISPNNNTYLWHLRLGHIN------LDRVRRLVKNGRLNK 149
              V+N + + + N ++K       NN  LWH R GHI+      + R         LN 
Sbjct: 405 --PVINFQAY-SINAKHK-------NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNN 464

Query: 150 LEDDSLPPCESCLEGKMTKRPF--TRKGYRAKEPLELIHSDLCGPMNVKARGGFKYLISF 209
           LE  S   CE CL GK  + PF   +     K PL ++HSD+CGP+         Y + F
Sbjct: 465 LE-LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIF 524

Query: 210 IDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMNLRFQDYMIE 264
           +D ++ Y   YL+++KS+    F+++  + E   + K+  L  D G EY++   + + ++
Sbjct: 525 VDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVK 569

[Close]

BLAST of Cmc12g0326961 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-19
Identity = 75/253 (29.64%), Postives = 119/253 (47.04%), Query Frame = 0


Query: 17  GDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEAFIS--KNGVHIC 76
           G A L   ++ + L  +  VP I +NL+SV  L   +  S+ F      +     GV + 
Sbjct: 353 GSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLL 412

Query: 77  SAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNT--YLWHLRLGHINLDRV 136
             K +D LY               +  A++Q      SP +      WH RLGH +L  +
Sbjct: 413 QGKTKDELY--------------EWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAIL 472

Query: 137 RRLVKNGRLNKLE-DDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHSDLCGPMNVKA 196
             ++ N  L  L     L  C  C   K  K PF+     + +PLE I+SD+     + +
Sbjct: 473 NSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILS 532

Query: 197 RGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYM 256
              ++Y + F+D ++RY +LY ++ KS+  + F  +K+ VEN    +I  L SD GGE++
Sbjct: 533 IDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV 588

Query: 257 NLRFQDYMIEHGI 264
            LR  DY+ +HGI
Sbjct: 593 VLR--DYLSQHGI 588

[Close]

BLAST of Cmc12g0326961 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.6e-18
Identity = 70/256 (27.34%), Postives = 115/256 (44.92%), Query Frame = 0


Query: 17  GDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINFSMNEAFISKNGV 76
           G   L   ++ + L N+  VP I +NL+SV  L          +  +F + +      GV
Sbjct: 374 GSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDL---NTGV 433

Query: 77  HICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNT--YLWHLRLGHINL 136
            +   K +D LY               +  A++Q      SP++      WH RLGH   
Sbjct: 434 PLLQGKTKDELY--------------EWPIASSQPVSLFASPSSKATHSSWHARLGHPAP 493

Query: 137 DRVRRLVKNGRLNKLE-DDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHSDLCGPMN 196
             +  ++ N  L+ L        C  CL  K  K PF++    +  PLE I+SD+     
Sbjct: 494 SILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SP 553

Query: 197 VKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGG 256
           + +   ++Y + F+D ++RY +LY ++ KS+  E F  +K  +EN    +I    SD GG
Sbjct: 554 ILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGG 609

Query: 257 EYMNLRFQDYMIEHGI 264
           E++ L   +Y  +HGI
Sbjct: 614 EFVAL--WEYFSQHGI 609

[Close]

BLAST of Cmc12g0326961 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.0e-13
Identity = 68/268 (25.37%), Postives = 114/268 (42.54%), Query Frame = 0


Query: 11  ISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGV 70
           I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 71  HICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTY-LWHLRLGHINLD 130
            +       + Y L  ++   + +H    T N  NK +  S N   Y L H  LGH N  
Sbjct: 550 VLAPIVKHGDFYWL--SKKYLIPSHISKLTINNVNKSK--SVNKYPYPLIHRMLGHANFR 609

Query: 131 RVRRLVKNGRLNKLEDDSLP-------PCESCLEGKMTKRPFTRKGYRAK-----EPLEL 190
            +++ +K   +  L++  +         C  CL GK TK     KG R K     EP + 
Sbjct: 610 SIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHV-KGSRLKYQESYEPFQY 669

Query: 191 IHSDLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSE--ALEKFKEYKTEVENLLS 250
           +H+D+ GP++   +    Y ISF D+ +R+ ++Y +  + E   L  F      ++N  +
Sbjct: 670 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFN 729

Query: 251 KKIKILRSDRGGEYMNLRFQDYMIEHGI 264
            ++ +++ DRG EY N     +    GI
Sbjct: 730 ARVLVIQMDRGSEYTNKTLHKFFTNRGI 751

[Close]

BLAST of Cmc12g0326961 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 6.6e-140
Identity = 250/265 (94.34%), Postives = 256/265 (96.60%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           NEAFI KNGVHICSAKLE+NLYVLRPNEAK VLNHE+FRTANTQNKRQ ISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRLGHINLDR+ RLVKNG LNKL+D SLPPCESCLEGKMTKRPFT KGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGF+Y ISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
           LRSDRGGEYM+LRFQDYMIEHGIQS
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQS 497

[Close]

BLAST of Cmc12g0326961 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.1e-137
Identity = 246/265 (92.83%), Postives = 253/265 (95.47%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           NEAFI KNGVHICSAKLE+NLYVLRPNEAK VLNHE+FRTANTQNKRQ ISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRLGHINLDR+ RLVK+G LNKL+D SLPPCESCLEGKMTKRPFT KGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARG F+Y ISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
            RSDRGGEYM+L FQDYMIEHGIQS
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQS 497

[Close]

BLAST of Cmc12g0326961 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 4.0e-137
Identity = 245/265 (92.45%), Postives = 252/265 (95.09%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVGT DVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           NEAFISKNGVHICS KLEDNLYVL+PNE K VLNHE+FRTANTQNKRQ IS NNNTYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRLGHINLDR+ RLVKNG LNKLEDDSLPPCESCLEGKMTKRPFT KGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKA GGF+Y ISFIDDYS YGYLYL+EHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
           LRSDRGGEYM+LRFQDYMIEHGIQS
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQS 469

[Close]

BLAST of Cmc12g0326961 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 8.7e-132
Identity = 241/265 (90.94%), Postives = 246/265 (92.83%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VGT DVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           NEAFISKNG     AKLEDNLYVLRPNEAK VLNHE+FRTANTQNKRQ ISPNNNTYLWH
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRL HINLDR+ RLVKNG LNKL+DDSLPPCESCLEGKMTKRPFT K YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGF+Y ISFIDDYSRYGYLYLMEHK EALEKFKEYKTEVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
           LRSDRGGEYM+LRFQDYMIEHGIQS
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQS 467

[Close]

BLAST of Cmc12g0326961 vs. ExPASy TrEMBL
Match: A0A5A7TYF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001600 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.2e-103
Identity = 186/265 (70.19%), Postives = 222/265 (83.77%), Query Frame = 0


Query: 1   MTLKVGTRDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MT++VGT  VISA AVG  +L     F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336 MTMRVGTGHVISAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61  NEAFISKNGVHICSAKLEDNLYVLRPNEAKTVLNHEVFRTANTQNKRQIISPNNNTYLWH 120
           N+ FI KNGV ICSAKLE+NLYVLR   +K +LN E+F+TA TQNKR  ISP  N +LWH
Sbjct: 396 NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121 LRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKEPLELIHS 180
           LRLGHINL+R+ RLVKNG L++LE++SLP CESCLEGKMTKRPFT KG+RAKEPLEL+HS
Sbjct: 456 LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181 DLCGPMNVKARGGFKYLISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGF+Y I+F DDYSRYGY+YLM+HKSEALEKFKEYK EVEN LSK IK 
Sbjct: 516 DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241 LRSDRGGEYMNLRFQDYMIEHGIQS 266
            RSDRGGEYM+L+FQ+Y++E GI S
Sbjct: 576 FRSDRGGEYMDLKFQNYLMECGIVS 600

[Close]

BLAST of Cmc12g0326961 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 58.5 bits (140), Expect = 9.2e-09
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 114 NNTYLWHLRLGHINLDRVRRLVKNGRLNKLEDDSLPPCESCLEGKMTKRPFTRKGYRAKE 173
           + T LWH RL H++   +  LVK G L+  +  SL  CE C+ GK  +  F+   +  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 174 PLELIHSDLCGPMNV 189
           PL+ +HSDL G  +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Cmc12g0326961 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	1.4e-139	94.34	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	6.4e-137	92.83	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	8.3e-137	92.45	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	1.8e-131	90.94	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046415.1	4.6e-103	70.19	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0326961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-27	28.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	6.6e-20	29.22	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.5e-19	29.64	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.6e-18	27.34	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	6.0e-13	25.37	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc12g0326961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	6.6e-140	94.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	3.1e-137	92.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	4.0e-137	92.45	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	8.7e-132	90.94	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5A7TYF5	2.2e-103	70.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]

BLAST of Cmc12g0326961 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	9.2e-09	38.67	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 216..236
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 166..263
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 166..263
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 172..264 e-value: 1.3E-11 score: 44.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 170..265 score: 14.345644
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 102..159 e-value: 9.2E-13 score: 47.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 166..265 e-value: 6.5E-17 score: 63.6
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 169..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0326961.1	Cmc12g0326961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding