Cmc12g0326811 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0326811
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	transcription termination factor MTEF18, mitochondrial
Location	CMiso1.1chr12: 17529519 .. 17529794 (-)
RNA-Seq Expression	Cmc12g0326811
Synteny	Cmc12g0326811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGCTATAAAAGAGGCCCAAGATGTGTTATTTTACTATCTTCATAATACTAGGAACCTCAACTTTGTAGTTGCTGAACACATAAGTAAGAACTCGCCTTATTTTCTTCAAAAATTGATCATGAAACTCGATACTGAACAAGATGTGTCTCGGTCTCTCACTAAGTATCTTAGATACCGTCACATCAATGAATTTGAGCCATTCTTTGAAAGCTTGGGAATGGCCCCGTCAGAGCTCCCTTTATTTCTTGAAAAATTGCCAAAAATAGATTAA

mRNA sequence

ATGCTTGCTATAAAAGAGGCCCAAGATGTGTTATTTTACTATCTTCATAATACTAGGAACCTCAACTTTGTAGTTGCTGAACACATAAGTAAGAACTCGCCTTATTTTCTTCAAAAATTGATCATGAAACTCGATACTGAACAAGATGTGTCTCGGTCTCTCACTAAGTATCTTAGATACCGTCACATCAATGAATTTGAGCCATTCTTTGAAAGCTTGGGAATGGCCCCGTCAGAGCTCCCTTTATTTCTTGAAAAATTGCCAAAAATAGATTAA

Coding sequence (CDS)

ATGCTTGCTATAAAAGAGGCCCAAGATGTGTTATTTTACTATCTTCATAATACTAGGAACCTCAACTTTGTAGTTGCTGAACACATAAGTAAGAACTCGCCTTATTTTCTTCAAAAATTGATCATGAAACTCGATACTGAACAAGATGTGTCTCGGTCTCTCACTAAGTATCTTAGATACCGTCACATCAATGAATTTGAGCCATTCTTTGAAAGCTTGGGAATGGCCCCGTCAGAGCTCCCTTTATTTCTTGAAAAATTGCCAAAAATAGATTAA

Protein sequence

MLAIKEAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYRHINEFEPFFESLGMAPSELPLFLEKLPKID

Homology

[Close]

BLAST of Cmc12g0326811 vs. NCBI nr
Match: XP_022142385.1 (transcription termination factor MTEF18, mitochondrial [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 2   LAIKEAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYR 61
           +A  EAQDVLF YLH TR+L+F  AEHISKNSP+FLQ LI+KLD E+DV+RSLTKYLRY 
Sbjct: 78  IARTEAQDVLFDYLHCTRSLSFTDAEHISKNSPHFLQNLILKLDGEKDVARSLTKYLRYN 137

Query: 62  HINEFEPFFESLGMAPSELPLFLEK 87
            INEFEPFFESLG+ PSELPLFL +
Sbjct: 138 PINEFEPFFESLGLPPSELPLFLPR 162

[Close]

BLAST of Cmc12g0326811 vs. NCBI nr
Match: XP_023519412.1 (transcription termination factor MTEF18, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-25
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 6   EAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYRHINE 65
           EAQ VLF YLH TR+L F  AEHISKNSP+FLQ LIMKLD+E+DV+RSL KYLRY  INE
Sbjct: 84  EAQKVLFDYLHCTRSLGFADAEHISKNSPHFLQNLIMKLDSEKDVARSLRKYLRYNPINE 143

Query: 66  FEPFFESLGMAPSELPLFLEK 87
           FEPFFESLG+ PSELPLFL +
Sbjct: 144 FEPFFESLGLPPSELPLFLPR 164

[Close]

BLAST of Cmc12g0326811 vs. NCBI nr
Match: KAG7019433.1 (Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-25
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 6   EAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYRHINE 65
           EAQ VLF YLH TR+L F  AEHISKNSP+FLQ LIMKLD+E+DV+RSL KYLRY  INE
Sbjct: 69  EAQKVLFDYLHCTRSLGFADAEHISKNSPHFLQNLIMKLDSEKDVARSLRKYLRYNPINE 128

Query: 66  FEPFFESLGMAPSELPLFLEK 87
           FEPFFESLG+ PSELPLFL +
Sbjct: 129 FEPFFESLGLPPSELPLFLPR 149

[Close]

BLAST of Cmc12g0326811 vs. NCBI nr
Match: KAG6583809.1 (Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-25
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 6   EAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYRHINE 65
           EAQ VLF YLH TR+L F  AEHISKNSP+FLQ LIMKLD+E+DV+RSL KYLRY  INE
Sbjct: 69  EAQKVLFDYLHCTRSLGFADAEHISKNSPHFLQNLIMKLDSEKDVARSLRKYLRYNPINE 128

Query: 66  FEPFFESLGMAPSELPLFLEK 87
           FEPFFESLG+ PSELPLFL +
Sbjct: 129 FEPFFESLGLPPSELPLFLPR 149

[Close]

BLAST of Cmc12g0326811 vs. NCBI nr
Match: XP_022927279.1 (transcription termination factor MTEF18, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-25
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 6   EAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYRHINE 65
           EAQ VLF YLH TR+L F  AEHISKNSP+FLQ LIMKLD+E+DV+RSL KYLRY  INE
Sbjct: 84  EAQKVLFDYLHCTRSLGFADAEHISKNSPHFLQNLIMKLDSEKDVARSLRKYLRYNPINE 143

Query: 66  FEPFFESLGMAPSELPLFLEK 87
           FEPFFESLG+ PSELPLFL +
Sbjct: 144 FEPFFESLGLPPSELPLFLPR 164

[Close]

BLAST of Cmc12g0326811 vs. ExPASy Swiss-Prot
Match: Q9M219 (Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF18 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.6e-12
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 2   LAIKEAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLD-TEQDVSRSLTKYLRY 61
           LAI +AQ  +  YLH TR+L++  AE I+ N+   ++ LI+KLD +    S+SL K+L Y
Sbjct: 32  LAIGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNLILKLDFSVPTFSKSLRKHLSY 91

Query: 62  RHINEFEPFFESLGMAPSELPLFL 85
             INEFE FFES+G+  SE+  FL
Sbjct: 92  HPINEFEFFFESIGIDYSEVSEFL 115

[Close]

BLAST of Cmc12g0326811 vs. ExPASy TrEMBL
Match: A0A6J1CKT4 (transcription termination factor MTEF18, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012532 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.9e-27
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 2   LAIKEAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYR 61
           +A  EAQDVLF YLH TR+L+F  AEHISKNSP+FLQ LI+KLD E+DV+RSLTKYLRY 
Sbjct: 78  IARTEAQDVLFDYLHCTRSLSFTDAEHISKNSPHFLQNLILKLDGEKDVARSLTKYLRYN 137

Query: 62  HINEFEPFFESLGMAPSELPLFLEK 87
            INEFEPFFESLG+ PSELPLFL +
Sbjct: 138 PINEFEPFFESLGLPPSELPLFLPR 162

[Close]

BLAST of Cmc12g0326811 vs. ExPASy TrEMBL
Match: A0A6J1EHL0 (transcription termination factor MTEF18, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111434165 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 6   EAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYRHINE 65
           EAQ VLF YLH TR+L F  AEHISKNSP+FLQ LIMKLD+E+DV+RSL KYLRY  INE
Sbjct: 84  EAQKVLFDYLHCTRSLGFADAEHISKNSPHFLQNLIMKLDSEKDVARSLRKYLRYNPINE 143

Query: 66  FEPFFESLGMAPSELPLFLEK 87
           FEPFFESLG+ PSELPLFL +
Sbjct: 144 FEPFFESLGLPPSELPLFLPR 164

[Close]

BLAST of Cmc12g0326811 vs. ExPASy TrEMBL
Match: A0A6J1KND2 (transcription termination factor MTEF18, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495068 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 6   EAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYRHINE 65
           EAQ VLF YLH TR+L F  AE+ISKNSP+FLQ LI+KLD+E+DV+RSLTKYLRY  INE
Sbjct: 84  EAQKVLFDYLHCTRSLGFADAEYISKNSPHFLQDLILKLDSEKDVARSLTKYLRYNPINE 143

Query: 66  FEPFFESLGMAPSELPLFLEK 87
           FEPFFESLG+ PSELP FL +
Sbjct: 144 FEPFFESLGLPPSELPSFLPR 164

[Close]

BLAST of Cmc12g0326811 vs. ExPASy TrEMBL
Match: A0A200Q854 (Mitochodrial transcription termination factor-related OS=Macleaya cordata OX=56857 GN=BVC80_8919g5 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 2   LAIKEAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYR 61
           +A  EAQDVLF YLH TRNL F  AEHISKNSP FLQ L+ K+D +Q+++RSL+++LRY 
Sbjct: 66  VARNEAQDVLFDYLHCTRNLQFTDAEHISKNSPAFLQNLLSKVDNDQEITRSLSRFLRYN 125

Query: 62  HINEFEPFFESLGMAPSELPLFLEK 87
            INEFEPFFESLG+APSELP  L +
Sbjct: 126 PINEFEPFFESLGLAPSELPSLLPR 150

[Close]

BLAST of Cmc12g0326811 vs. ExPASy TrEMBL
Match: A0A6P4BK76 (transcription termination factor MTEF18, mitochondrial-like OS=Ziziphus jujuba OX=326968 GN=LOC107432853 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 2   LAIKEAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQDVSRSLTKYLRYR 61
           LA  EAQD LF YLH+TR+  F  AE+ISKNSP+F+Q L+ K+DTE+DV+ SLTK+LRY 
Sbjct: 69  LARNEAQDALFDYLHSTRSFCFTDAEYISKNSPHFIQNLLSKIDTEKDVAHSLTKFLRYN 128

Query: 62  HINEFEPFFESLGMAPSELPLFLEK 87
            INEFEPFFESLG++PSELP  L +
Sbjct: 129 PINEFEPFFESLGLSPSELPFLLPR 153

[Close]

BLAST of Cmc12g0326811 vs. TAIR 10
Match: AT5G06810.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-16
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 5   KEAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLD--TEQDVSRSLTKYLRYRH 64
           K A++ +  Y ++TR L ++VAE +SKNSP F+  L+ K+D  T  D+++S+T+YLR+  
Sbjct: 76  KLAEEAMLDYFYSTRGLQYMVAESMSKNSPIFIDNLLKKVDCVTASDINQSITRYLRFHP 135

Query: 65  INEFEPFFESLGMAPSE 80
           +NEFEPF ES G+ PSE
Sbjct: 136 VNEFEPFLESSGLNPSE 152

[Close]

BLAST of Cmc12g0326811 vs. TAIR 10
Match: AT4G19650.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-15
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 16  HNTRNLNFVVAEHISKNSPYFLQKLIMKLDTEQ-DVSRSLTKYLRYRHINEFEPFFESLG 75
           +N   L + + EHISKNSP F+  L+ K+D  Q DVS+ LTK+LRY  INEFEPFFESLG
Sbjct: 80  YNNTRLTYQL-EHISKNSPCFMSTLLSKIDDNQKDVSKGLTKFLRYNPINEFEPFFESLG 139

Query: 76  MAPSELPLFLEK 87
           + P E   FL +
Sbjct: 140 LCPYEFETFLPR 150

[Close]

BLAST of Cmc12g0326811 vs. TAIR 10
Match: AT3G60400.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 70.9 bits (172), Expect = 6.1e-13
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 2   LAIKEAQDVLFYYLHNTRNLNFVVAEHISKNSPYFLQKLIMKLD-TEQDVSRSLTKYLRY 61
           LAI +AQ  +  YLH TR+L++  AE I+ N+   ++ LI+KLD +    S+SL K+L Y
Sbjct: 32  LAIGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNLILKLDFSVPTFSKSLRKHLSY 91

Query: 62  RHINEFEPFFESLGMAPSELPLFL 85
             INEFE FFES+G+  SE+  FL
Sbjct: 92  HPINEFEFFFESIGIDYSEVSEFL 115

The following BLAST results are available for this feature:

BLAST of Cmc12g0326811 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142385.1	2.0e-26	75.29	transcription termination factor MTEF18, mitochondrial [Momordica charantia]	[more]
XP_023519412.1	2.9e-25	76.54	transcription termination factor MTEF18, mitochondrial-like [Cucurbita pepo subs...	[more]
KAG7019433.1	2.9e-25	76.54	Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyr...	[more]
KAG6583809.1	2.9e-25	76.54	Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyr...	[more]
XP_022927279.1	2.9e-25	76.54	transcription termination factor MTEF18, mitochondrial-like [Cucurbita moschata]	[more]

BLAST of Cmc12g0326811 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M219	8.6e-12	47.62	Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc12g0326811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKT4	9.9e-27	75.29	transcription termination factor MTEF18, mitochondrial OS=Momordica charantia OX...	[more]
A0A6J1EHL0	1.4e-25	76.54	transcription termination factor MTEF18, mitochondrial-like OS=Cucurbita moschat...	[more]
A0A6J1KND2	2.1e-24	74.07	transcription termination factor MTEF18, mitochondrial-like OS=Cucurbita maxima ...	[more]
A0A200Q854	1.7e-23	67.06	Mitochodrial transcription termination factor-related OS=Macleaya cordata OX=568...	[more]
A0A6P4BK76	3.0e-23	65.88	transcription termination factor MTEF18, mitochondrial-like OS=Ziziphus jujuba O...	[more]

BLAST of Cmc12g0326811 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06810.1	3.5e-16	48.05	Mitochondrial transcription termination factor family protein	[more]
AT4G19650.1	3.8e-15	55.56	Mitochondrial transcription termination factor family protein	[more]
AT3G60400.1	6.1e-13	47.62	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 3..84
None	No IPR available	PANTHER	PTHR13068:SF38	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 3..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0326811.1	Cmc12g0326811.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding