Cmc12g0326671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0326671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	photosystem I subunit F
Location	CMiso1.1chr12: 17339207 .. 17340882 (+)
RNA-Seq Expression	Cmc12g0326671
Synteny	Cmc12g0326671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACTTGTGCCAATTACAACAATCCAACTCAGCTTCCCTTACTCTCTTCATCTTATCCAAAACCTTCTTCTCCACCACTAATCTCATGATCCTCTCTGAATCTAAAACCGTTCCCTCCACACTCTTTTTCCAAATCTCCTTCTTCTTCTTCCTGCAATTCCCTAATCCTTCAAACCCATTTCAACAATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGCTCCCCGTTGGCCTTAAAGCCAAAACCCTCTTCATCCATCCTCTGCTCCGCCTTTCCAAATCAAAATCAAAGTCAAAACCCCTCTTCCTCTCTTCAAGCCTTCTCCGCTGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCCGCCGTCGCCGACATCTCCGGTCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTGAGTCTGCTTTGAAGAACTACGCCCCGGATAGCGCCCCGGCGCTTGCCATCAAAGCCACGATCGAAAAGACCAAGAGGCGATTTGCCTTCTATGGGAAACAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATTACTCCTGGATTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGGAATGAAAAGAAACCTACCCAAAAGGAGATTATCATTGATGTTCCGTTGGCCACTAGTTTGGTGTTTAGAGGCTTCAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAGGATGTCTAATTCTTCTCCTTCAGGTACTACTCTTCTATTTGTTGCAGTTGAGTGATTCAATGGAGTATTTGAATTGATTGTTATGTCTCTGAATTGCTTTATTCTAATTTTCAATCTCACAAGCGAATATACCATAAAATGGATTTAGCTATGTTTCTTTAGGAGTGGTGTTTCCATGGCCAATCGACTCCTTTGATTATTGGATATTCCAAGTCTTTTTAGTTTAGTGGTTCATATAATATTAGAGCACATAGTTCTATGTTTTAATCATCATAACATCATTTACTTCTTAGTTGATATTGATATTTGTTTGTTGGTATTAGTGATTTTCTAGTTAGAAGTGCCTTGGAGGTCTTATATTATAATGGACATGCTTAAGCTACTTATAATGTAATGATGTGATTAATCTTTTAGGTTTAATGGTGATTTAGAACGAAGAAGAAAAAAAATGGTCTTTATGTATTATTAGTTGTGTTTTTTTTATGAGTTCTACCTATGTATGTTTTTCCAAAGGCCAATCTTCTCATTTGTTTCATTTTGTTTTGTTGTGGTATTGACAGAGATAGGGAAAGTTGAAGAGGAATTGAGTTTTGGAGGATATGGAGGGAATGGAATGGGGTTTGTGAAATATTTGTGTATTTAATTTGGAAACTTGAGATGAGTATATGTAATGGTTGGTTTGTGTTGGATATAAGGGCAATCCATTCTTTTCACTTCCCCTTTCTTTTGTATTCAAAATTCTCTAACATTATTGACCCAGCAATCTTTTCTTAAGTAATTAACTAGAAAATTTCATTCAAATCCTTAATGTTGATGT

mRNA sequence

AAGACTTGTGCCAATTACAACAATCCAACTCAGCTTCCCTTACTCTCTTCATCTTATCCAAAACCTTCTTCTCCACCACTAATCTCATGATCCTCTCTGAATCTAAAACCGTTCCCTCCACACTCTTTTTCCAAATCTCCTTCTTCTTCTTCCTGCAATTCCCTAATCCTTCAAACCCATTTCAACAATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGCTCCCCGTTGGCCTTAAAGCCAAAACCCTCTTCATCCATCCTCTGCTCCGCCTTTCCAAATCAAAATCAAAGTCAAAACCCCTCTTCCTCTCTTCAAGCCTTCTCCGCTGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCCGCCGTCGCCGACATCTCCGGTCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTGAGTCTGCTTTGAAGAACTACGCCCCGGATAGCGCCCCGGCGCTTGCCATCAAAGCCACGATCGAAAAGACCAAGAGGCGATTTGCCTTCTATGGGAAACAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATTACTCCTGGATTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGGAATGAAAAGAAACCTACCCAAAAGGAGATTATCATTGATGTTCCGTTGGCCACTAGTTTGGTGTTTAGAGGCTTCAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAGGATGTCTAATTCTTCTCCTTCAGAGATAGGGAAAGTTGAAGAGGAATTGAGTTTTGGAGGATATGGAGGGAATGGAATGGGGTTTGTGAAATATTTGTGTATTTAATTTGGAAACTTGAGATGAGTATATGTAATGGTTGGTTTGTGTTGGATATAAGGGCAATCCATTCTTTTCACTTCCCCTTTCTTTTGTATTCAAAATTCTCTAACATTATTGACCCAGCAATCTTTTCTTAAGTAATTAACTAGAAAATTTCATTCAAATCCTTAATGTTGATGT

Coding sequence (CDS)

ATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGCTCCCCGTTGGCCTTAAAGCCAAAACCCTCTTCATCCATCCTCTGCTCCGCCTTTCCAAATCAAAATCAAAGTCAAAACCCCTCTTCCTCTCTTCAAGCCTTCTCCGCTGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCCGCCGTCGCCGACATCTCCGGTCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTGAGTCTGCTTTGAAGAACTACGCCCCGGATAGCGCCCCGGCGCTTGCCATCAAAGCCACGATCGAAAAGACCAAGAGGCGATTTGCCTTCTATGGGAAACAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATTACTCCTGGATTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGGAATGAAAAGAAACCTACCCAAAAGGAGATTATCATTGATGTTCCGTTGGCCACTAGTTTGGTGTTTAGAGGCTTCAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAGGATGTCTAA

Protein sequence

MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV

Homology

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BLAST of Cmc12g0326671 vs. NCBI nr
Match: XP_008459076.1 (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis melo] >KAA0043281.1 photosystem I reaction center subunit III [Cucumis melo var. makuwa] >TYK29345.1 photosystem I reaction center subunit III [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.0e-119
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

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BLAST of Cmc12g0326671 vs. NCBI nr
Match: XP_004150631.1 (photosystem I reaction center subunit III, chloroplastic [Cucumis sativus] >KGN66911.1 hypothetical protein Csa_006875 [Cucumis sativus])

HSP 1 Score: 419.9 bits (1078), Expect = 1.4e-113
Identity = 218/226 (96.46%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPK SSPLALKPKPSSSILCSA  +QNQ+QN SSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSA--SQNQNQNTSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLES+LKNYAPDSAPALAIKATIEK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           R+EKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RDEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

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BLAST of Cmc12g0326671 vs. NCBI nr
Match: XP_038895167.1 (photosystem I reaction center subunit III, chloroplastic [Benincasa hispida])

HSP 1 Score: 415.6 bits (1067), Expect = 2.7e-112
Identity = 215/226 (95.13%), Postives = 219/226 (96.90%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPKLSSPL  KPKPSSSILCSA   QNQ+QNPSSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLPSKPKPSSSILCSA--TQNQNQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLES+LKNYAPDSAPALA+KATIEK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALALKATIEK 120

Query: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           R +KKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RGDKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

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BLAST of Cmc12g0326671 vs. NCBI nr
Match: XP_023542340.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.0 bits (1029), Expect = 6.9e-108
Identity = 207/227 (91.19%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQS-QNPSSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           IR++KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 227

[Close]

BLAST of Cmc12g0326671 vs. NCBI nr
Match: XP_022955103.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita moschata])

HSP 1 Score: 399.8 bits (1026), Expect = 1.5e-107
Identity = 206/227 (90.75%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQS-QNPSSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           IR++KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNG+LIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGDLIAKDV 227

[Close]

BLAST of Cmc12g0326671 vs. ExPASy Swiss-Prot
Match: Q9SHE8 (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAF PE=1 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.3e-85
Identity = 166/227 (73.13%), Postives = 188/227 (82.82%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALK-PKPSSSILCSAFPNQNQSQNPSSSLQAFSAALAL 60
           MSLTIP NL   +L P+ +  L    PK S+  +CS   +   S +   S++AFSAA+AL
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCS---DDKSSSSTPQSMKAFSAAVAL 60

Query: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120
           SSILLSAP+PAVADISGLTPCK+SKQFAKREKQQIKKLES+LK YAP+SAPALA+ A IE
Sbjct: 61  SSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRF  YGK GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIA 180

Query: 181 IRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           I  EKKP  KEIIIDVPLA+ ++FRGF WPVAAYRE +NG+LIAKDV
Sbjct: 181 ISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221

[Close]

BLAST of Cmc12g0326671 vs. ExPASy Swiss-Prot
Match: P46486 (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia OX=4227 GN=PSAF PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 6.5e-85
Identity = 173/228 (75.88%), Postives = 192/228 (84.21%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKL-SSPLALKPK-PSSSILCSAFPNQN-QSQNPSSSLQAFSAAL 60
           MS TI T+  +PL    L SSP+  K K  S+SI+CS   ++   + +  SSL+A SAAL
Sbjct: 1   MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAAL 60

Query: 61  ALSSILLSA---PLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAI 120
           ALSSIL+S+    LPA ADISGLTPCKESKQFAKREKQ +KKLES+LK YAPDSAPALAI
Sbjct: 61  ALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAI 120

Query: 121 KATIEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGR 180
           KAT+EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGR
Sbjct: 121 KATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGR 180

Query: 181 SYLIAIRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELI 223
           SYLIAIR+EKKPTQKEIIIDVPLAT L+FRGFSWPVAAYRE +NGELI
Sbjct: 181 SYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228

[Close]

BLAST of Cmc12g0326671 vs. ExPASy Swiss-Prot
Match: P12355 (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAF PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.6e-81
Identity = 167/232 (71.98%), Postives = 187/232 (80.60%), Query Frame = 0


Query: 1   MSLTIPTNLSKPL-LKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQA-----FS 60
           MS TIPTNL KPL  KPK  S  +  P+  S I+C     +N  Q P     A      +
Sbjct: 1   MSFTIPTNLYKPLATKPKHLSSSSFAPR--SKIVCQ---QENDQQQPKKLELAKVGANAA 60

Query: 61  AALALSSILLS----APLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAP 120
           AALALSS+LLS    AP  A+ADI+GLTPCKESKQFAKREKQ +KKL+++LK YA DSAP
Sbjct: 61  AALALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAP 120

Query: 121 ALAIKATIEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIG 180
           ALAIKAT+EKTK+RF  YGK GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIG
Sbjct: 121 ALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIG 180

Query: 181 WVGRSYLIAIRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELI 223
           WVGRSYLIAIR+EKKPTQKEIIIDVPLA+SL+FRGFSWPVAAYREL+NGEL+
Sbjct: 181 WVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227

[Close]

BLAST of Cmc12g0326671 vs. ExPASy Swiss-Prot
Match: P13192 (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAF PE=1 SV=2)

HSP 1 Score: 288.1 bits (736), Expect = 8.6e-77
Identity = 151/217 (69.59%), Postives = 173/217 (79.72%), Query Frame = 0


Query: 15  KPKLSSPLALKPKPSSSILCSAFPNQNQSQNP--SSSLQAFSAALALSSILLS----APL 74
           KP+LS P A   + S S   S+  N N +  P  S+S++ FSAALALSS+LLS    +P 
Sbjct: 17  KPRLSRPPA---RLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATSPP 76

Query: 75  PAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEKTKRRFAFY 134
           PA ADI+GLTPCKESK FAKREKQ +KKL S+LK YAPDSAPALAI+ATI+KTKRRF  Y
Sbjct: 77  PAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENY 136

Query: 135 GKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRNEKKPTQ 194
           GK GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLIA+  EKKP  
Sbjct: 137 GKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAM 196

Query: 195 KEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKD 226
           +EIIIDV LA  ++ RGF WPVAAYREL+NG+L+  D
Sbjct: 197 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230

[Close]

BLAST of Cmc12g0326671 vs. ExPASy Swiss-Prot
Match: P12356 (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=PSAF PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 110/213 (51.64%), Postives = 145/213 (68.08%), Query Frame = 0


Query: 17  KLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALSSILLSAPLPAVADISG 76
           K SS +A   + +  + C A  N+  S+  +    A +A+   +++ LSAP  A+ADI+G
Sbjct: 11  KASSRVAPSSRRALRVACQAQKNETASKVGT----ALAASALAAAVSLSAPSAAMADIAG 70

Query: 77  LTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEKTKRRFAFYGKQGLLCG 136
           LTPC ESK +AK EK+++K LE  LK Y  DSAPA+A+KAT+E+TK RFA Y K GLLCG
Sbjct: 71  LTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCG 130

Query: 137 ADGLPHLI----VSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRNEKKPTQKEII 196
            DGLPHLI    ++    H GE   P F FLY+AG+IG+VGR YLIA++ E KPT KEII
Sbjct: 131 NDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEII 190

Query: 197 IDVPLATSLVFRGFSWPVAAYRELVNGELIAKD 226
           IDVPLAT L ++G  WP+AA +EL  G L+ K+
Sbjct: 191 IDVPLATKLAWQGAGWPLAAVQELQRGTLLEKE 219

[Close]

BLAST of Cmc12g0326671 vs. ExPASy TrEMBL
Match: A0A5D3E1S6 (PSI-F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00570 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.0e-120
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

[Close]

BLAST of Cmc12g0326671 vs. ExPASy TrEMBL
Match: A0A1S3C8V6 (PSI-F OS=Cucumis melo OX=3656 GN=LOC103498296 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.0e-120
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

[Close]

BLAST of Cmc12g0326671 vs. ExPASy TrEMBL
Match: A0A0A0M3X2 (PSI-F OS=Cucumis sativus OX=3659 GN=Csa_1G714680 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 7.0e-114
Identity = 218/226 (96.46%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPK SSPLALKPKPSSSILCSA  +QNQ+QN SSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSA--SQNQNQNTSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLES+LKNYAPDSAPALAIKATIEK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           R+EKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV
Sbjct: 181 RDEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

[Close]

BLAST of Cmc12g0326671 vs. ExPASy TrEMBL
Match: A0A6J1GT12 (PSI-F OS=Cucurbita moschata OX=3662 GN=LOC111457171 PE=3 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.4e-108
Identity = 206/227 (90.75%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQS-QNPSSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180

Query: 181 IRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           IR++KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNG+LIAKDV
Sbjct: 181 IRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGDLIAKDV 227

[Close]

BLAST of Cmc12g0326671 vs. ExPASy TrEMBL
Match: A0A6J1K487 (PSI-F OS=Cucurbita maxima OX=3661 GN=LOC111490506 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.3e-107
Identity = 205/226 (90.71%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA   QNQ++  SSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSA--TQNQNETASSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120
           SILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++EK
Sbjct: 61  SILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEK 120

Query: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           R++KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 RDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 224

[Close]

BLAST of Cmc12g0326671 vs. TAIR 10
Match: AT1G31330.1 (photosystem I subunit F )

HSP 1 Score: 317.4 bits (812), Expect = 9.4e-87
Identity = 166/227 (73.13%), Postives = 188/227 (82.82%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKLSSPLALK-PKPSSSILCSAFPNQNQSQNPSSSLQAFSAALAL 60
           MSLTIP NL   +L P+ +  L    PK S+  +CS   +   S +   S++AFSAA+AL
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCS---DDKSSSSTPQSMKAFSAAVAL 60

Query: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120
           SSILLSAP+PAVADISGLTPCK+SKQFAKREKQQIKKLES+LK YAP+SAPALA+ A IE
Sbjct: 61  SSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIA 180
           KTKRRF  YGK GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLIA
Sbjct: 121 KTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIA 180

Query: 181 IRNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 227
           I  EKKP  KEIIIDVPLA+ ++FRGF WPVAAYRE +NG+LIAKDV
Sbjct: 181 ISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221

The following BLAST results are available for this feature:

BLAST of Cmc12g0326671 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459076.1	1.0e-119	100.00	PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis mel...	[more]
XP_004150631.1	1.4e-113	96.46	photosystem I reaction center subunit III, chloroplastic [Cucumis sativus] >KGN6...	[more]
XP_038895167.1	2.7e-112	95.13	photosystem I reaction center subunit III, chloroplastic [Benincasa hispida]	[more]
XP_023542340.1	6.9e-108	91.19	photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. ...	[more]
XP_022955103.1	1.5e-107	90.75	photosystem I reaction center subunit III, chloroplastic [Cucurbita moschata]	[more]

BLAST of Cmc12g0326671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE8	1.3e-85	73.13	Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana...	[more]
P46486	6.5e-85	75.88	Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia O...	[more]
P12355	2.6e-81	71.98	Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea OX...	[more]
P13192	8.6e-77	69.59	Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare OX=4...	[more]
P12356	1.1e-50	51.64	Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinha...	[more]

BLAST of Cmc12g0326671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1S6	5.0e-120	100.00	PSI-F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00570 PE=3 SV=...	[more]
A0A1S3C8V6	5.0e-120	100.00	PSI-F OS=Cucumis melo OX=3656 GN=LOC103498296 PE=3 SV=1	[more]
A0A0A0M3X2	7.0e-114	96.46	PSI-F OS=Cucumis sativus OX=3659 GN=Csa_1G714680 PE=3 SV=1	[more]
A0A6J1GT12	7.4e-108	90.75	PSI-F OS=Cucurbita moschata OX=3662 GN=LOC111457171 PE=3 SV=1	[more]
A0A6J1K487	1.3e-107	90.71	PSI-F OS=Cucurbita maxima OX=3661 GN=LOC111490506 PE=3 SV=1	[more]

BLAST of Cmc12g0326671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31330.1	9.4e-87	73.13	photosystem I subunit F	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	GENE3D	1.10.8.110	Photosystem I PsaF, reaction centre subunit III	coord: 73..226 e-value: 4.3E-74 score: 249.3
IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	SUPERFAMILY	81536	Subunit III of photosystem I reaction centre, PsaF	coord: 73..225
IPR003666	Photosystem I PsaF, reaction centre subunit III	PFAM	PF02507	PSI_PsaF	coord: 60..225 e-value: 4.0E-81 score: 270.9
IPR003666	Photosystem I PsaF, reaction centre subunit III	PANTHER	PTHR34939	PHOTOSYSTEM I REACTION CENTER SUBUNIT III, CHLOROPLASTIC	coord: 1..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0326671.1	Cmc12g0326671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I