Cmc12g0326411 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0326411
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-protease polyprotein
LocationCMiso1.1chr12: 16899203 .. 16901169 (-)
RNA-Seq ExpressionCmc12g0326411
SyntenyCmc12g0326411
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCGGCTCCAAGTCGGCTGAGTTGAGCCGAGCTAGCCGAGCCGCCATCCGTACCTGTGACGAACCGAGCCGTGATCTAGCCAAGCCGAGCCGCGAGCCAAAAGCTGAGCCAAGCGAAGCCGCAAGCCGAGAGCCGAGCGAAGCCGAGTCGCGAGCCGAGAACTGAGCCAAACCGAGCCGTGAGCCGATAACAGAACAGAGTTGAGCCGAGCCGAGCCGCAAGAGCCGCCGCCCAAGCCAAGTCGATTTCCAAGCCAATCTCTTGATCCACCAGGCCACTTAAGTCGTGTCAATTCGTGTCGAGTCCCGGTGAGTCTTGGTAAGGACAATGTGAGGAATTTTCTAATGTTTTCAATATTCAGTGAGAGCCTAAATGTCGGATTAAAATGTTGAACTGATTGGTTGGGTTAACTGTTGATCTCCTGAAGGTGCTAGCGAGGTGACGCTCGAGTTCAGGAGTGTTACGGCAAGTGTAGTTGGAACCAACTCTCCTTTATTGGGTAAGTCGGTAGAAGTTACTTGGAACGTTTGTAATGTGGATTTCGGTGATGTCATTGTTAAACCCGTATGTTCGTGTTTAGGTGGAGTCGTTTGGACGCAGACTTGAACAAGATTTAGCTACATCTCAGGTAAGGGATTTCTTACTACTGGACCTCGGATCGAGGCTGGAAACGTAGTAACCCACATGGGATTATACATTAGTAACTATTTTGAATGAATTGACGCATGATTGACTAATACATATCACTTATATGCTCTTGACTGATTAAAGGTAACGTGGTCGTTAGTTGTAGCTTATGTGCTATCATATGTAATGAGTTGTTTACGAATAGAAACTGATGCCCGGATGTTCTGTGTATTGTAGTTATGTTGGTGGGCTACGTTGTGAACTGGAATGGTATGTCGATGGACTATAAGGTCTTAATGTTATGTAAGTGGAAGTCTGTTGTCGAGATATTGGTTATGGAGTTATGTTGTGGAAGGACTAAGAGTTCGAGAACCTCTCGTGTACATTGAGTATACGCCGTTGAACCGTGCTGTAAACTGAATATGATTGTCATGCATAATGTGAACGTTACGCATAACATAGATTACTTAGGGATACACTAGGGTTTGAACTGAGTCGAAGTATCGTCAGGTGACTTTACAATGTGAGGATTTGACTAGTTGACTGGATTTAAAGAAATGTCACAATGATGTGTGAATTGGATATGCATATAGCAACTGAGGAGATAGTTGTTTAAACCTATATTGTCTGACTGGCTAAGCCTATGACTGAACTGTCAGTTTGAACATTATCGGGGTGTGACTGTTGTAGATGGTTTAGTATAGGCTGTGGGGTAACGGTTAGCTTCATCTATGGGGTAGTGTACCTTACTGATACGTGTATCCTTCGGGATCACTAGACTGATATGTGCATCCTTCGAGATCACTAGACTGATACGTGTATCCTTCGGGATCACTAGACTGATATGTGCATCCTTCGGGATCACTAGACTGATACGTGTATTCTTCGGGATCACTAGACTAATATATGTATCTTTCGGGATCACTAGACTGATATGTGTATCCTTCGGGATCACGAGACTAATGTGTGCGTTCTACGGAACCACTATACTGTTTATGTAGGATACCCCTGAATAGGAAGTTAACTGTTATCCCCTGACGGGCCCAGTAGTGGGTCCCTTACTGGGTAAATCTTATACTCACTATTTTTCTCTTTAACCTTTCAGGTAAGGGTACAGCGAGGGGCAGACCGACGAGGGGCAAGAAGGATGCGTGAAGGCCATATGGACACGTCTGGTTTTTTTATGCTTCCGTTGATGTATTTTGTTACTCGTTATTTTCATTGTCAGATCGAGTCATGGTTAGAATATGTGGTTTGCGGTTTGTGTTTGATGATTTGAGCACAGTATTTTGGAACTCTCGTGAATGTGATTTAAAATAAGGCCCGAAACTGCTTTTGT

mRNA sequence

AATCGGCTCCAAGTCGGCTGAGTTGAGCCGAGCTAGCCGAGCCGCCATCCGTACCTGTGACGAACCGAGCCGTGATCTAGCCAAGCCGAGCCGCGAGCCAAAAGCTGAGCCAAGCGAAGCCGCAAGCCGAGAGCCGAGCGAAGCCGAGTCGCGAGCCGAGAACTGAGCCAAACCGAGCCGTGAGCCGATAACAGAACAGAGTTGAGCCGAGCCGAGCCGCAAGAGCCGCCGCCCAAGCCAAGTCGATTTCCAAGCCAATCTCTTGATCCACCAGGCCACTTAAGTCGTGTCAATTCGTGTCGAGTCCCGGTGAGTCTTGGTAAGGACAATGTGAGGAATTTTCTAATGTTTTCAATATTCAGTGAGAGCCTAAATGTCGGATTAAAATGTTGAACTGATTGGTTGGGTTAACTGTTGATCTCCTGAAGGTGCTAGCGAGGTGACGCTCGAGTTCAGGAGTGTTACGGCAAGTGTAGTTGGAACCAACTCTCCTTTATTGGGTGGAGTCGTTTGGACGCAGACTTGAACAAGATTTAGCTACATCTCAGTTATGTTGGTGGGCTACGTTGTGAACTGGAATGGTAAGGGTACAGCGAGGGGCAGACCGACGAGGGGCAAGAAGGATGCGTGAAGGCCATATGGACACGTCTGGTTTTTTTATGCTTCCGTTGATGTATTTTGTTACTCGTTATTTTCATTGTCAGATCGAGTCATGGTTAGAATATGTGGTTTGCGGTTTGTGTTTGATGATTTGAGCACAGTATTTTGGAACTCTCGTGAATGTGATTTAAAATAAGGCCCGAAACTGCTTTTGT

Coding sequence (CDS)

ATGGTAAGGGTACAGCGAGGGGCAGACCGACGAGGGGCAAGAAGGATGCGTGAAGGCCATATGGACACGTCTGGTTTTTTTATGCTTCCGTTGATGTATTTTGTTACTCGTTATTTTCATTGTCAGATCGAGTCATGGTTAGAATATGTGGTTTGCGGTTTGTGTTTGATGATTTGA

Protein sequence

MVRVQRGADRRGARRMREGHMDTSGFFMLPLMYFVTRYFHCQIESWLEYVVCGLCLMI
Homology
[Close]
BLAST of Cmc12g0326411 vs. NCBI nr
Match: TYK01089.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.7e-14
Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 2  VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFVTRYFHCQIESW 47
          VRVQRGADRRGARRMRE HMD  GF MLPLMYF TRYFHCQIESW
Sbjct: 44 VRVQRGADRRGARRMREDHMDAFGFLMLPLMYFGTRYFHCQIESW 88

[Close]
BLAST of Cmc12g0326411 vs. NCBI nr
Match: KAA0066618.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 6.5e-10
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 2  VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFVTRYFHCQIESW 47
          VRVQRGADRRGARRMREGHMD S F       FV RYFHCQIESW
Sbjct: 48 VRVQRGADRRGARRMREGHMDASDFLYASADVFVIRYFHCQIESW 92

[Close]
BLAST of Cmc12g0326411 vs. NCBI nr
Match: KAA0049906.1 (gag-protease polyprotein [Cucumis melo var. makuwa] >TYK07647.1 gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 6.7e-07
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 2   VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFVTRYFH-CQIESWLEYVVCGL 55
           VRVQRGADRRGARRMREGHMD SGFFMLPL+++ +  F  C++   +    C L
Sbjct: 235 VRVQRGADRRGARRMREGHMDASGFFMLPLIWYQSLSFRLCRLTYDVSLYFCVL 288

[Close]
BLAST of Cmc12g0326411 vs. NCBI nr
Match: TYK23489.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 2   VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFV 36
           VRVQRGADRR A R REGHMD SGFFMLPLMYFV
Sbjct: 346 VRVQRGADRREAGRTREGHMDASGFFMLPLMYFV 379

[Close]
BLAST of Cmc12g0326411 vs. NCBI nr
Match: KAA0063204.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 2   VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFV 36
           VRVQRGADRR A R REGHMD SGFFMLPLMYFV
Sbjct: 632 VRVQRGADRREAGRTREGHMDASGFFMLPLMYFV 665

[Close]
BLAST of Cmc12g0326411 vs. ExPASy TrEMBL
Match: A0A5D3BSM2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G001150 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 2  VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFVTRYFHCQIESW 47
          VRVQRGADRRGARRMRE HMD  GF MLPLMYF TRYFHCQIESW
Sbjct: 44 VRVQRGADRRGARRMREDHMDAFGFLMLPLMYFGTRYFHCQIESW 88

[Close]
BLAST of Cmc12g0326411 vs. ExPASy TrEMBL
Match: A0A5A7VFU5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold979G00340 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 2  VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFVTRYFHCQIESW 47
          VRVQRGADRRGARRMREGHMD S F       FV RYFHCQIESW
Sbjct: 48 VRVQRGADRRGARRMREGHMDASDFLYASADVFVIRYFHCQIESW 92

[Close]
BLAST of Cmc12g0326411 vs. ExPASy TrEMBL
Match: A0A5A7U6V1 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00510 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 2   VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFVTRYFH-CQIESWLEYVVCGL 55
           VRVQRGADRRGARRMREGHMD SGFFMLPL+++ +  F  C++   +    C L
Sbjct: 235 VRVQRGADRRGARRMREGHMDASGFFMLPLIWYQSLSFRLCRLTYDVSLYFCVL 288

[Close]
BLAST of Cmc12g0326411 vs. ExPASy TrEMBL
Match: A0A5D3DJS1 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774G00030 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 2   VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFV 36
           VRVQRGADRR A R REGHMD SGFFMLPLMYFV
Sbjct: 346 VRVQRGADRREAGRTREGHMDASGFFMLPLMYFV 379

[Close]
BLAST of Cmc12g0326411 vs. ExPASy TrEMBL
Match: A0A5A7V7K9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G00120 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 2   VRVQRGADRRGARRMREGHMDTSGFFMLPLMYFV 36
           VRVQRGADRR A R REGHMD SGFFMLPLMYFV
Sbjct: 632 VRVQRGADRREAGRTREGHMDASGFFMLPLMYFV 665

The following BLAST results are available for this feature:
BLAST of Cmc12g0326411 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01089.19.7e-1488.89ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066618.16.5e-1077.78ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049906.16.7e-0761.11gag-protease polyprotein [Cucumis melo var. makuwa] >TYK07647.1 gag-protease pol... [more]
TYK23489.12.5e-0688.24retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0063204.12.5e-0688.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of Cmc12g0326411 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc12g0326411 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BSM24.7e-1488.89Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26... [more]
A0A5A7VFU53.1e-1077.78Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold97... [more]
A0A5A7U6V13.2e-0761.11Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3DJS11.2e-0688.24Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7V7K91.2e-0688.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Cmc12g0326411 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0326411.1Cmc12g0326411.1mRNA