Cmc12g0325141 (gene) Melon (Charmono) v1.1

Overview
NameCmc12g0325141
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr12: 15113262 .. 15114155 (+)
RNA-Seq ExpressionCmc12g0325141
SyntenyCmc12g0325141
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAGCCATGTCTCAAACACCTTATATAAACAAAATGTTGTCAAGATATAAGATGCAAAATTCCAAAACGGGTCTGCTGCCGTACAAATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGTTGTTGGGAGCCTGATGTAAGCAATGTTATGTACTAGACCTGACATTTGCTATTTAGTGGGGATTGTTAGTAGATATCAGTCCAATCTTGGACGTGATCATTGGACAATCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACAGGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAACGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGAAAGCTGAATATGTAGCTGGATGTGAAGCAGCGAAAGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCCGTCAATCACCTTATACTGTGACAATAGTGGTGCAATTGCCAATTCACGAGAACCTAGAAGTCATAAACGTGGAAAGCACATTGAACGAAACTACCATCTTATCAAGGAAATCGTACATCGAGGAGACGTTACAGTAATAAAAATTTCCTCAGAGCAAAACATGGATGATCCGTTAACAAAATCTCTCACGGCTAAAGTGTTTGAGAGCCACCTACATGGTTTAGGTCTACGCGGTTTGTAA

mRNA sequence

ATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAGCCATGTCTCAAACACCTTATATAAACAAAATGTTGTCAAGATATAAGATGCAAAATTCCAAAACGGGTCTGCTGCCGTACAAATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGTTGTTGGGAGCCTGATATATCAGTCCAATCTTGGACGTGATCATTGGACAATCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACAGGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAACGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGAAAGCTGAATATGTAGCTGGATGTGAAGCAGCGAAAGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCCGTCAATCACCTTATACTGTGACAATAGTGGTGCAATTGCCAATTCACGAGAACCTAGAAGTCATAAACGTGGAAAGCACATTGAACGAAACTACCATCTTATCAAGGAAATCGTACATCGAGGAGACGTTACAGTAATAAAAATTTCCTCAGAGCAAAACATGGATGATCCGTTAACAAAATCTCTCACGGCTAAAGTGTTTGAGAGCCACCTACATGGTTTAGGTCTACGCGGTTTGTAA

Coding sequence (CDS)

ATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAGCCATGTCTCAAACACCTTATATAAACAAAATGTTGTCAAGATATAAGATGCAAAATTCCAAAACGGGTCTGCTGCCGTACAAATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGTTGTTGGGAGCCTGATATATCAGTCCAATCTTGGACGTGATCATTGGACAATCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACAGGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAACGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGAAAGCTGAATATGTAGCTGGATGTGAAGCAGCGAAAGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCCGTCAATCACCTTATACTGTGACAATAGTGGTGCAATTGCCAATTCACGAGAACCTAGAAGTCATAAACGTGGAAAGCACATTGAACGAAACTACCATCTTATCAAGGAAATCGTACATCGAGGAGACGTTACAGTAATAAAAATTTCCTCAGAGCAAAACATGGATGATCCGTTAACAAAATCTCTCACGGCTAAAGTGTTTGAGAGCCACCTACATGGTTTAGGTCTACGCGGTTTGTAA

Protein sequence

MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKEQCPKTPQEVEDMSNIPYASVVGSLIYQSNLGRDHWTIVKNILKYLRRTKDYRLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHKRGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL
Homology
BLAST of Cmc12g0325141 vs. NCBI nr
Match: KAA0033336.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 493.0 bits (1268), Expect = 1.6e-135
Identity = 246/278 (88.49%), Postives = 258/278 (92.81%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MKDLGNAQYVLGIQIVRNRKNKTLAMSQT YI+KMLSRYKMQNS  GLL Y+YGIHLSKE
Sbjct: 505 MKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSIKGLLSYRYGIHLSKE 564

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLIYQSNLGRDHWTIVKNILKYLRRTKDYRLVYGSKDL 120
           QCPKTPQEV+DMSNIPYASVVGSLIYQSN GRDHWT VKNILKYLRRTKDY LVYGSKDL
Sbjct: 565 QCPKTPQEVKDMSNIPYASVVGSLIYQSNPGRDHWTAVKNILKYLRRTKDYMLVYGSKDL 624

Query: 121 ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMKAEYVAGCEAAKE 180
           ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSI+QSCIADSTM+ EYVA CEAAKE
Sbjct: 625 ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIQQSCIADSTMEVEYVAACEAAKE 684

Query: 181 AVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHKRGKHIERNYHLIKEIVHRG 240
           AVWLKKFLTDLEVVPNMH  IT+Y DNSGA+ANSREPRS KRGKHI+R YHLI+EIV++G
Sbjct: 685 AVWLKKFLTDLEVVPNMHLPITIYFDNSGAVANSREPRSPKRGKHIKRKYHLIREIVYQG 744

Query: 241 DVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
           DVTV KISSEQNM D  TK+  AKVFESHLHGLGLRGL
Sbjct: 745 DVTVTKISSEQNMADQFTKAFVAKVFESHLHGLGLRGL 782

BLAST of Cmc12g0325141 vs. NCBI nr
Match: TYK21571.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 493.0 bits (1268), Expect = 1.6e-135
Identity = 246/278 (88.49%), Postives = 258/278 (92.81%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MKDLGNAQYVLGIQIVRNRKNKTLAMSQT YI+KMLSRYKMQNS  GLL Y+YGIHLSKE
Sbjct: 495 MKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSIKGLLSYRYGIHLSKE 554

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLIYQSNLGRDHWTIVKNILKYLRRTKDYRLVYGSKDL 120
           QCPKTPQEV+DMSNIPYASVVGSLIYQSN GRDHWT VKNILKYLRRTKDY LVYGSKDL
Sbjct: 555 QCPKTPQEVKDMSNIPYASVVGSLIYQSNPGRDHWTAVKNILKYLRRTKDYMLVYGSKDL 614

Query: 121 ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMKAEYVAGCEAAKE 180
           ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSI+QSCIADSTM+ EYVA CEAAKE
Sbjct: 615 ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIQQSCIADSTMEVEYVAACEAAKE 674

Query: 181 AVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHKRGKHIERNYHLIKEIVHRG 240
           AVWLKKFLTDLEVVPNMH  IT+Y DNSGA+ANSREPRS KRGKHI+R YHLI+EIV++G
Sbjct: 675 AVWLKKFLTDLEVVPNMHLPITIYFDNSGAVANSREPRSPKRGKHIKRKYHLIREIVYQG 734

Query: 241 DVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
           DVTV KISSEQNM D  TK+  AKVFESHLHGLGLRGL
Sbjct: 735 DVTVTKISSEQNMADQFTKAFVAKVFESHLHGLGLRGL 772

BLAST of Cmc12g0325141 vs. NCBI nr
Match: KAA0058854.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 475.3 bits (1222), Expect = 3.5e-130
Identity = 240/297 (80.81%), Postives = 254/297 (85.52%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MK LGNA YVL IQIVRNRKNKTLAMSQT YI+KMLSRYKMQNSK  LLPY+YGIHLSKE
Sbjct: 413 MKYLGNAPYVLDIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKE 472

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLI-------------------YQSNLGRDHWTIVKNI 120
           QCPKTPQEVEDMSNIPYA  +GSL+                   YQSN GRDHWT+VKNI
Sbjct: 473 QCPKTPQEVEDMSNIPYAFAIGSLMYAMLCIRPDICYSVRIVSTYQSNPGRDHWTVVKNI 532

Query: 121 LKYLRRTKDYRLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           +KYLRRTKDY  VYGSKDLILT YTDSDFQTDKDARKSTSGSVF LNGGAVVWRSIKQSC
Sbjct: 533 IKYLRRTKDYMFVYGSKDLILTRYTDSDFQTDKDARKSTSGSVFILNGGAVVWRSIKQSC 592

Query: 181 IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
           IADSTM+ +YVA CEAAKEAVWLKKFLTDLEVVPNM   ITLYCDNSGA+ANSREPRSHK
Sbjct: 593 IADSTMEVKYVAACEAAKEAVWLKKFLTDLEVVPNMQLPITLYCDNSGAVANSREPRSHK 652

Query: 241 RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
            GKHIER YHLI++IVHRGDVTV KISSE+NM DP  K+LTAK+FESHLHGLGLRGL
Sbjct: 653 HGKHIERKYHLIRKIVHRGDVTVTKISSEENMADPFIKALTAKMFESHLHGLGLRGL 709

BLAST of Cmc12g0325141 vs. NCBI nr
Match: TYK23767.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 475.3 bits (1222), Expect = 3.5e-130
Identity = 240/297 (80.81%), Postives = 254/297 (85.52%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MK LGNA YVL IQIVRNRKNKTLAMSQT YI+KMLSRYKMQNSK  LLPY+YGIHLSKE
Sbjct: 287 MKYLGNAPYVLDIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKE 346

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLI-------------------YQSNLGRDHWTIVKNI 120
           QCPKTPQEVEDMSNIPYA  +GSL+                   YQSN GRDHWT+VKNI
Sbjct: 347 QCPKTPQEVEDMSNIPYAFAIGSLMYAMLCIRPDICYSVRIVSTYQSNPGRDHWTVVKNI 406

Query: 121 LKYLRRTKDYRLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           +KYLRRTKDY  VYGSKDLILT YTDSDFQTDKDARKSTSGSVF LNGGAVVWRSIKQSC
Sbjct: 407 IKYLRRTKDYMFVYGSKDLILTRYTDSDFQTDKDARKSTSGSVFILNGGAVVWRSIKQSC 466

Query: 181 IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
           IADSTM+ +YVA CEAAKEAVWLKKFLTDLEVVPNM   ITLYCDNSGA+ANSREPRSHK
Sbjct: 467 IADSTMEVKYVAACEAAKEAVWLKKFLTDLEVVPNMQLPITLYCDNSGAVANSREPRSHK 526

Query: 241 RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
            GKHIER YHLI++IVHRGDVTV KISSE+NM DP  K+LTAK+FESHLHGLGLRGL
Sbjct: 527 HGKHIERKYHLIRKIVHRGDVTVTKISSEENMADPFIKALTAKMFESHLHGLGLRGL 583

BLAST of Cmc12g0325141 vs. NCBI nr
Match: KAA0032972.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21997.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.9 bits (1195), Expect = 4.8e-127
Identity = 240/297 (80.81%), Postives = 247/297 (83.16%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MKDLGNAQYVLGIQIVRNRKNKTLAMS T YI+KMLSRYKMQNSK GLLPY+YGIHLSKE
Sbjct: 541 MKDLGNAQYVLGIQIVRNRKNKTLAMSYTSYIDKMLSRYKMQNSKMGLLPYRYGIHLSKE 600

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLI-------------------YQSNLGRDHWTIVKNI 120
           QCPKTPQEVEDMSNIPYASVV SL+                   YQSNLGRDHWT VKNI
Sbjct: 601 QCPKTPQEVEDMSNIPYASVVESLMYVMLCTRPDIFYSVGIVSKYQSNLGRDHWTTVKNI 660

Query: 121 LKYLRRTKDYRLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           LKY RR KDY LVY SKDLILTGYTDSDFQ DKDAR ST GSVFTLN GAVVWRSIKQSC
Sbjct: 661 LKYFRRKKDYMLVYCSKDLILTGYTDSDFQIDKDARNSTLGSVFTLNRGAVVWRSIKQSC 720

Query: 181 IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
           IADSTM+AEYVA CEA KE VWLKKFLT L+ VPNMH  I LYCDNSGAIANSREPRSHK
Sbjct: 721 IADSTMEAEYVATCEATKEVVWLKKFLTYLKFVPNMHLPIILYCDNSGAIANSREPRSHK 780

Query: 241 RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
           RGKHIER YHLI+E VHR DV V KIS EQNM DP TK+LT KVFESHLHGLGLR L
Sbjct: 781 RGKHIERKYHLIRENVHRRDVIVTKISFEQNMVDPFTKALTTKVFESHLHGLGLRSL 837

BLAST of Cmc12g0325141 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-55
Identity = 120/286 (41.96%), Postives = 168/286 (58.74%), Query Frame = 0

Query: 1    MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
            MKDLG AQ +LG++IVR R ++ L +SQ  YI ++L R+ M+N+K    P    + LSK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QCPKTPQEVEDMSNIPYASVVGSLIYQ-------------------SNLGRDHWTIVKNI 120
             CP T +E  +M+ +PY+S VGSL+Y                     N G++HW  VK I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYLRRTKDYRLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
            L+YLR T    L +G  D IL GYTD+D   D D RKS++G +FT +GGA+ W+S  Q C
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 181  IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
            +A ST +AEY+A  E  KE +WLK+FL +L +         +YCD+  AI  S+    H 
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHA 1274

Query: 241  RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFE 268
            R KHI+  YH I+E+V    + V+KIS+ +N  D LTK +    FE
Sbjct: 1275 RTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

BLAST of Cmc12g0325141 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 129.4 bits (324), Expect = 6.3e-29
Identity = 92/303 (30.36%), Postives = 147/303 (48.51%), Query Frame = 0

Query: 1    MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLP----YKYGIH 60
            M DL   ++ +GI+I    +   + +SQ+ Y+ K+LS++ M+N      P      Y + 
Sbjct: 1114 MTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELL 1173

Query: 61   LSKEQCPKTPQEVEDMSNIPYASVVGSLI-------------------YQSNLGRDHWTI 120
             S E C           N P  S++G L+                   Y S    + W  
Sbjct: 1174 NSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  VKNILKYLRRTKDYRLVYGSKDLI----LTGYTDSDFQTDKDARKSTSGSVFTL-NGGAV 180
            +K +L+YL+ T D +L++  K+L     + GY DSD+   +  RKST+G +F + +   +
Sbjct: 1234 LKRVLRYLKGTIDMKLIF-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLI 1293

Query: 181  VWRSIKQSCIADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIA 240
             W + +Q+ +A S+ +AEY+A  EA +EA+WLK  LT + +   +   I +Y DN G I+
Sbjct: 1294 CWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCIS 1353

Query: 241  NSREPRSHKRGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHG 276
             +  P  HKR KHI+  YH  +E V    + +  I +E  + D  TK L A  F      
Sbjct: 1354 IANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDK 1400

BLAST of Cmc12g0325141 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.5e-25
Identity = 87/294 (29.59%), Postives = 135/294 (45.92%), Query Frame = 0

Query: 1    MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
            +K+  +  Y LGI+    R  + L +SQ  Y   +L+R  M  +K    P      L+  
Sbjct: 1160 VKEHEDLHYFLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1219

Query: 61   QCPKTPQEVEDMSNIPYASVVGSLIY-----------QSNLGR-------DHWTIVKNIL 120
               K P   E      Y  +VGSL Y            + L +       DHW  +K +L
Sbjct: 1220 SGTKLPDPTE------YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVL 1279

Query: 121  KYLRRTKDYRL-VYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
            +YL  T D+ + +     L L  Y+D+D+  D D   ST+G +  L    + W S KQ  
Sbjct: 1280 RYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKG 1339

Query: 181  IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
            +  S+ +AEY +    + E  W+   LT+L +  + HP + +YCDN GA      P  H 
Sbjct: 1340 VVRSSTEAEYRSVANTSSELQWICSLLTELGIQLS-HPPV-IYCDNVGATYLCANPVFHS 1399

Query: 241  RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGL 276
            R KHI  +YH I+  V  G + V+ +S+   + D LTK L+   F++    +G+
Sbjct: 1400 RMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

BLAST of Cmc12g0325141 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-22
Identity = 87/294 (29.59%), Postives = 128/294 (43.54%), Query Frame = 0

Query: 1    MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
            +KD     Y LGI+    R    L +SQ  YI  +L+R  M  +K    P      LS  
Sbjct: 1177 VKDHEELHYFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLY 1236

Query: 61   QCPKTPQEVEDMSNIPYASVVGSLIYQSNLGRD------------------HWTIVKNIL 120
               K     E      Y  +VGSL Y +    D                  H   +K IL
Sbjct: 1237 SGTKLTDPTE------YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRIL 1296

Query: 121  KYLRRTKDYRL-VYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
            +YL  T ++ + +     L L  Y+D+D+  DKD   ST+G +  L    + W S KQ  
Sbjct: 1297 RYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKG 1356

Query: 181  IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
            +  S+ +AEY +    + E  W+   LT+L +     P   +YCDN GA      P  H 
Sbjct: 1357 VVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPP--VIYCDNVGATYLCANPVFHS 1416

Query: 241  RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGL 276
            R KHI  +YH I+  V  G + V+ +S+   + D LTK L+   F++    +G+
Sbjct: 1417 RMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

BLAST of Cmc12g0325141 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.5e-18
Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = 0

Query: 72  MSNIPYASVVGSLIYQSNLGR-------------------DHWTIVKNILKYLRRTKDYR 131
           M N+PY S VG+++Y   + R                    HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 132 LVYGSKDLI-LTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMKAEY 185
           L +       L GY+D+D+  D ++R+STSG +F LNGG V WRS KQ  +A S+ + EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

BLAST of Cmc12g0325141 vs. ExPASy TrEMBL
Match: A0A5D3DD25 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00700 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 8.0e-136
Identity = 246/278 (88.49%), Postives = 258/278 (92.81%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MKDLGNAQYVLGIQIVRNRKNKTLAMSQT YI+KMLSRYKMQNS  GLL Y+YGIHLSKE
Sbjct: 495 MKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSIKGLLSYRYGIHLSKE 554

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLIYQSNLGRDHWTIVKNILKYLRRTKDYRLVYGSKDL 120
           QCPKTPQEV+DMSNIPYASVVGSLIYQSN GRDHWT VKNILKYLRRTKDY LVYGSKDL
Sbjct: 555 QCPKTPQEVKDMSNIPYASVVGSLIYQSNPGRDHWTAVKNILKYLRRTKDYMLVYGSKDL 614

Query: 121 ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMKAEYVAGCEAAKE 180
           ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSI+QSCIADSTM+ EYVA CEAAKE
Sbjct: 615 ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIQQSCIADSTMEVEYVAACEAAKE 674

Query: 181 AVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHKRGKHIERNYHLIKEIVHRG 240
           AVWLKKFLTDLEVVPNMH  IT+Y DNSGA+ANSREPRS KRGKHI+R YHLI+EIV++G
Sbjct: 675 AVWLKKFLTDLEVVPNMHLPITIYFDNSGAVANSREPRSPKRGKHIKRKYHLIREIVYQG 734

Query: 241 DVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
           DVTV KISSEQNM D  TK+  AKVFESHLHGLGLRGL
Sbjct: 735 DVTVTKISSEQNMADQFTKAFVAKVFESHLHGLGLRGL 772

BLAST of Cmc12g0325141 vs. ExPASy TrEMBL
Match: A0A5A7STL2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001550 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 8.0e-136
Identity = 246/278 (88.49%), Postives = 258/278 (92.81%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MKDLGNAQYVLGIQIVRNRKNKTLAMSQT YI+KMLSRYKMQNS  GLL Y+YGIHLSKE
Sbjct: 505 MKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSIKGLLSYRYGIHLSKE 564

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLIYQSNLGRDHWTIVKNILKYLRRTKDYRLVYGSKDL 120
           QCPKTPQEV+DMSNIPYASVVGSLIYQSN GRDHWT VKNILKYLRRTKDY LVYGSKDL
Sbjct: 565 QCPKTPQEVKDMSNIPYASVVGSLIYQSNPGRDHWTAVKNILKYLRRTKDYMLVYGSKDL 624

Query: 121 ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMKAEYVAGCEAAKE 180
           ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSI+QSCIADSTM+ EYVA CEAAKE
Sbjct: 625 ILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIQQSCIADSTMEVEYVAACEAAKE 684

Query: 181 AVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHKRGKHIERNYHLIKEIVHRG 240
           AVWLKKFLTDLEVVPNMH  IT+Y DNSGA+ANSREPRS KRGKHI+R YHLI+EIV++G
Sbjct: 685 AVWLKKFLTDLEVVPNMHLPITIYFDNSGAVANSREPRSPKRGKHIKRKYHLIREIVYQG 744

Query: 241 DVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
           DVTV KISSEQNM D  TK+  AKVFESHLHGLGLRGL
Sbjct: 745 DVTVTKISSEQNMADQFTKAFVAKVFESHLHGLGLRGL 782

BLAST of Cmc12g0325141 vs. ExPASy TrEMBL
Match: A0A5D3DJL5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00880 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.7e-130
Identity = 240/297 (80.81%), Postives = 254/297 (85.52%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MK LGNA YVL IQIVRNRKNKTLAMSQT YI+KMLSRYKMQNSK  LLPY+YGIHLSKE
Sbjct: 287 MKYLGNAPYVLDIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKE 346

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLI-------------------YQSNLGRDHWTIVKNI 120
           QCPKTPQEVEDMSNIPYA  +GSL+                   YQSN GRDHWT+VKNI
Sbjct: 347 QCPKTPQEVEDMSNIPYAFAIGSLMYAMLCIRPDICYSVRIVSTYQSNPGRDHWTVVKNI 406

Query: 121 LKYLRRTKDYRLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           +KYLRRTKDY  VYGSKDLILT YTDSDFQTDKDARKSTSGSVF LNGGAVVWRSIKQSC
Sbjct: 407 IKYLRRTKDYMFVYGSKDLILTRYTDSDFQTDKDARKSTSGSVFILNGGAVVWRSIKQSC 466

Query: 181 IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
           IADSTM+ +YVA CEAAKEAVWLKKFLTDLEVVPNM   ITLYCDNSGA+ANSREPRSHK
Sbjct: 467 IADSTMEVKYVAACEAAKEAVWLKKFLTDLEVVPNMQLPITLYCDNSGAVANSREPRSHK 526

Query: 241 RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
            GKHIER YHLI++IVHRGDVTV KISSE+NM DP  K+LTAK+FESHLHGLGLRGL
Sbjct: 527 HGKHIERKYHLIRKIVHRGDVTVTKISSEENMADPFIKALTAKMFESHLHGLGLRGL 583

BLAST of Cmc12g0325141 vs. ExPASy TrEMBL
Match: A0A5A7UUR4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00140 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.7e-130
Identity = 240/297 (80.81%), Postives = 254/297 (85.52%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MK LGNA YVL IQIVRNRKNKTLAMSQT YI+KMLSRYKMQNSK  LLPY+YGIHLSKE
Sbjct: 413 MKYLGNAPYVLDIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKE 472

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLI-------------------YQSNLGRDHWTIVKNI 120
           QCPKTPQEVEDMSNIPYA  +GSL+                   YQSN GRDHWT+VKNI
Sbjct: 473 QCPKTPQEVEDMSNIPYAFAIGSLMYAMLCIRPDICYSVRIVSTYQSNPGRDHWTVVKNI 532

Query: 121 LKYLRRTKDYRLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           +KYLRRTKDY  VYGSKDLILT YTDSDFQTDKDARKSTSGSVF LNGGAVVWRSIKQSC
Sbjct: 533 IKYLRRTKDYMFVYGSKDLILTRYTDSDFQTDKDARKSTSGSVFILNGGAVVWRSIKQSC 592

Query: 181 IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
           IADSTM+ +YVA CEAAKEAVWLKKFLTDLEVVPNM   ITLYCDNSGA+ANSREPRSHK
Sbjct: 593 IADSTMEVKYVAACEAAKEAVWLKKFLTDLEVVPNMQLPITLYCDNSGAVANSREPRSHK 652

Query: 241 RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
            GKHIER YHLI++IVHRGDVTV KISSE+NM DP  K+LTAK+FESHLHGLGLRGL
Sbjct: 653 HGKHIERKYHLIRKIVHRGDVTVTKISSEENMADPFIKALTAKMFESHLHGLGLRGL 709

BLAST of Cmc12g0325141 vs. ExPASy TrEMBL
Match: A0A5D3DE90 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00310 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.3e-127
Identity = 240/297 (80.81%), Postives = 247/297 (83.16%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           MKDLGNAQYVLGIQIVRNRKNKTLAMS T YI+KMLSRYKMQNSK GLLPY+YGIHLSKE
Sbjct: 541 MKDLGNAQYVLGIQIVRNRKNKTLAMSYTSYIDKMLSRYKMQNSKMGLLPYRYGIHLSKE 600

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLI-------------------YQSNLGRDHWTIVKNI 120
           QCPKTPQEVEDMSNIPYASVV SL+                   YQSNLGRDHWT VKNI
Sbjct: 601 QCPKTPQEVEDMSNIPYASVVESLMYVMLCTRPDIFYSVGIVSKYQSNLGRDHWTTVKNI 660

Query: 121 LKYLRRTKDYRLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
           LKY RR KDY LVY SKDLILTGYTDSDFQ DKDAR ST GSVFTLN GAVVWRSIKQSC
Sbjct: 661 LKYFRRKKDYMLVYCSKDLILTGYTDSDFQIDKDARNSTLGSVFTLNRGAVVWRSIKQSC 720

Query: 181 IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 240
           IADSTM+AEYVA CEA KE VWLKKFLT L+ VPNMH  I LYCDNSGAIANSREPRSHK
Sbjct: 721 IADSTMEAEYVATCEATKEVVWLKKFLTYLKFVPNMHLPIILYCDNSGAIANSREPRSHK 780

Query: 241 RGKHIERNYHLIKEIVHRGDVTVIKISSEQNMDDPLTKSLTAKVFESHLHGLGLRGL 279
           RGKHIER YHLI+E VHR DV V KIS EQNM DP TK+LT KVFESHLHGLGLR L
Sbjct: 781 RGKHIERKYHLIRENVHRRDVIVTKISFEQNMVDPFTKALTTKVFESHLHGLGLRSL 837

BLAST of Cmc12g0325141 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-18
Identity = 70/254 (27.56%), Postives = 118/254 (46.46%), Query Frame = 0

Query: 1   MKDLGNAQYVLGIQIVRNRKNKTLAMSQTPYINKMLSRYKMQNSKTGLLPYKYGIHLSKE 60
           ++DLG  +Y LG++I R+     + + Q  Y   +L    +   K   +P    +  S  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 369

Query: 61  QCPKTPQEVEDMSNIPYASVVGSLIYQSNLGRD------------------HWTIVKNIL 120
                    + +    Y  ++G L+Y      D                  H   V  IL
Sbjct: 370 ------SGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKIL 429

Query: 121 KYLRRTKDYRLVYGSK-DLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSC 180
            Y++ T    L Y S+ ++ L  ++D+ FQ+ KD R+ST+G    L    + W+S KQ  
Sbjct: 430 HYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQV 489

Query: 181 IADSTMKAEYVAGCEAAKEAVWLKKFLTDLEVVPNMHPSITLYCDNSGAIANSREPRSHK 236
           ++ S+ +AEY A   A  E +WL +F  +L+ +P   P++ L+CDN+ AI  +     H+
Sbjct: 490 VSKSSAEAEYRALSFATDEMMWLAQFFRELQ-LPLSKPTL-LFCDNTAAIHIATNAVFHE 549

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033336.11.6e-13588.49gag/pol protein [Cucumis melo var. makuwa][more]
TYK21571.11.6e-13588.49gag/pol protein [Cucumis melo var. makuwa][more]
KAA0058854.13.5e-13080.81gag/pol protein [Cucumis melo var. makuwa][more]
TYK23767.13.5e-13080.81gag/pol protein [Cucumis melo var. makuwa][more]
KAA0032972.14.8e-12780.81gag/pol protein [Cucumis melo var. makuwa] >TYK21997.1 gag/pol protein [Cucumis ... [more]
Match NameE-valueIdentityDescription
P109781.3e-5541.96Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041466.3e-2930.36Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT945.5e-2529.59Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW21.5e-2229.59Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P0CV728.5e-1839.10Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
A0A5D3DD258.0e-13688.49Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G0070... [more]
A0A5A7STL28.0e-13688.49Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G0015... [more]
A0A5D3DJL51.7e-13080.81Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G008... [more]
A0A5A7UUR41.7e-13080.81Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00140... [more]
A0A5D3DE902.3e-12780.81Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G0031... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.3e-1827.56cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 136..237
NoneNo IPR availablePANTHERPTHR11439:SF273RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOGcoord: 136..237
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 123..264
e-value: 4.42923E-62
score: 190.372

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc12g0325141.1Cmc12g0325141.1mRNA